MC00g0366 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0366
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S12, chloroplastic
Location	scaffold7: 368775 .. 368930 (-)
RNA-Seq Expression	MC00g0366
Synteny	MC00g0366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAAAGGGAGAAGGGTTAAGGAC

mRNA sequence

TCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAAAGGGAGAAGGGTTAAGGAC

Coding sequence (CDS)

TCCACTATCACCCCCAAAAAACCAAACTCTGCTTTAGGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAAAGGGAGAAGGGTTAAGGAC

Protein sequence

STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD

Homology

[Close]

BLAST of MC00g0366 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.9e-21
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

[Close]

BLAST of MC00g0366 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-20
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 2  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. ExPASy Swiss-Prot
Match: Q3V510 (30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-20
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 2  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. ExPASy Swiss-Prot
Match: A4QJD9 (30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-20
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 2  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. ExPASy Swiss-Prot
Match: A4QJM3 (30S ribosomal protein S12, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-20
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 2  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. NCBI nr
Match: THU42747.1 (hypothetical protein C4D60_Mb00t13930 [Musa balbisiana])

HSP 1 Score: 98.6 bits (244), Expect = 1.33e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 11 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 62

[Close]

BLAST of MC00g0366 vs. NCBI nr
Match: VVW89850.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 98.6 bits (244), Expect = 1.74e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 12 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 63

[Close]

BLAST of MC00g0366 vs. NCBI nr
Match: RWV89324.1 (hypothetical protein GW17_00048527, partial [Ensete ventricosum])

HSP 1 Score: 98.6 bits (244), Expect = 1.94e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 10 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 61

[Close]

BLAST of MC00g0366 vs. NCBI nr
Match: KYP43640.1 (hypothetical protein KK1_034921, partial [Cajanus cajan] >KYP55165.1 hypothetical protein KK1_001372, partial [Cajanus cajan])

HSP 1 Score: 98.6 bits (244), Expect = 2.05e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 1  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 52

[Close]

BLAST of MC00g0366 vs. NCBI nr
Match: CDI73623.1 (ribosomal protein S12, 3, partial [Pyrus spinosa])

HSP 1 Score: 98.6 bits (244), Expect = 2.50e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 1  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 52

[Close]

BLAST of MC00g0366 vs. ExPASy TrEMBL
Match: A0A4S8I4F5 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t13930 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.44e-26
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 11 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 62

[Close]

BLAST of MC00g0366 vs. ExPASy TrEMBL
Match: A0A5K1HM42 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30506 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.43e-26
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 12 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 63

[Close]

BLAST of MC00g0366 vs. ExPASy TrEMBL
Match: A0A444CTW6 (Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_00048527 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.41e-26
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 10 STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 61

[Close]

BLAST of MC00g0366 vs. ExPASy TrEMBL
Match: A0A151RM35 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_001372 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 9.95e-26
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 1  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 52

[Close]

BLAST of MC00g0366 vs. ExPASy TrEMBL
Match: A0A287NDH3 (Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.05e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 52
          STITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 3  STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 54

[Close]

BLAST of MC00g0366 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 2  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 2  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 2  TITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          TITPKKPNSAL KVARVRLTSGFEITAYIPGIGHNLQEHSVVLV+G RVKD
Sbjct: 39 TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          ST TPKKPNSA  K+A+VRL++  +I A+IPG GHN QEHS VL++G RVKD
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKD 89

[Close]

BLAST of MC00g0366 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 1  STITPKKPNSALGKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVKGRRVKD 53
          ST TPKKPNSA  K+A+VRL++  +I A+IPG GHN QEHS VL++G RVKD
Sbjct: 38 STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKD 89

The following BLAST results are available for this feature:

BLAST of MC00g0366 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QJX7	9.9e-21	94.23	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4QJV5	2.9e-20	94.12	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q3V510	2.9e-20	94.12	30S ribosomal protein S12, chloroplastic OS=Acorus calamus OX=4465 GN=rps12-A PE...	[more]
A4QJD9	2.9e-20	94.12	30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium OX=434059 GN=...	[more]
A4QJM3	2.9e-20	94.12	30S ribosomal protein S12, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=...	[more]

BLAST of MC00g0366 vs. NCBI nr


Match Name	E-value	Identity	Description
THU42747.1	1.33e-25	94.23	hypothetical protein C4D60_Mb00t13930 [Musa balbisiana]	[more]
VVW89850.1	1.74e-25	94.23	unnamed protein product, partial [Nymphaea colorata]	[more]
RWV89324.1	1.94e-25	94.23	hypothetical protein GW17_00048527, partial [Ensete ventricosum]	[more]
KYP43640.1	2.05e-25	94.23	hypothetical protein KK1_034921, partial [Cajanus cajan] >KYP55165.1 hypothetica...	[more]
CDI73623.1	2.50e-25	94.23	ribosomal protein S12, 3, partial [Pyrus spinosa]	[more]

BLAST of MC00g0366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4S8I4F5	6.44e-26	94.23	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t13930 PE=3 SV=...	[more]
A0A5K1HM42	8.43e-26	94.23	Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30...	[more]
A0A444CTW6	9.41e-26	94.23	Uncharacterized protein (Fragment) OS=Ensete ventricosum OX=4639 GN=GW17_0004852...	[more]
A0A151RM35	9.95e-26	94.23	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_001372 PE=3 S...	[more]
A0A287NDH3	1.05e-25	94.23	Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1	[more]

BLAST of MC00g0366 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	2.1e-21	94.12	ribosomal protein S12A	[more]
ATCG01230.1	2.1e-21	94.12	ribosomal protein S12B	[more]
ATCG00905.1	2.1e-21	94.12	ribosomal protein S12C	[more]
AT2G07675.1	2.1e-13	65.38	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	2.1e-13	65.38	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 5..20 score: 85.24 coord: 21..40 score: 75.14 coord: 40..52 score: 53.24
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 2..49 e-value: 1.5E-19 score: 69.7
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 1..52
None	No IPR available	GENE3D	2.40.50.140		coord: 1..52 e-value: 1.8E-26 score: 94.3
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 1..52
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0366.1	MC00g0366.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome