MC00g0352 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g0352
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Locationscaffold7: 210948 .. 211085 (-)
RNA-Seq ExpressionMC00g0352
SyntenyMC00g0352
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGGTCTTTATTGGACCACGGGGAGTTTTGAATTTTGCGATTTGTTTAAAATATTCCATAACTTGATTTATAATAATGAGGTTAATTTCTTATTTGTTACTTTGTCTGCGGTCCTATTATTTGCAGGTGCAGTTGCT

mRNA sequence

TTAGGTCTTTATTGGACCACGGGGAGTTTTGAATTTTGCGATTTGTTTAAAATATTCCATAACTTGATTTATAATAATGAGGTTAATTTCTTATTTGTTACTTTGTCTGCGGTCCTATTATTTGCAGGTGCAGTTGCT

Coding sequence (CDS)

TTAGGTCTTTATTGGACCACGGGGAGTTTTGAATTTTGCGATTTGTTTAAAATATTCCATAACTTGATTTATAATAATGAGGTTAATTTCTTATTTGTTACTTTGTCTGCGGTCCTATTATTTGCAGGTGCAGTTGCT

Protein sequence

LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA
Homology
[Close]
BLAST of MC00g0352 vs. ExPASy Swiss-Prot
Match: Q68RV9 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Panax ginseng OX=4054 GN=ndhF PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.5e-15
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 47
           LG YW TGSFEF DLFKIF NLIYNNEVNFLFVTL AVLLFAGAVA
Sbjct: 194 LGFYWITGSFEFRDLFKIFSNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]
BLAST of MC00g0352 vs. ExPASy Swiss-Prot
Match: B1NWJ6 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta OX=3983 GN=ndhF PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 7.2e-15
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 47
           LGLYW TGSFEF DLFKIF+NLIYNN+VNFLFVTL AVLLF+GA+A
Sbjct: 194 LGLYWITGSFEFRDLFKIFNNLIYNNQVNFLFVTLCAVLLFSGAIA 239

[Close]
BLAST of MC00g0352 vs. ExPASy Swiss-Prot
Match: Q2VED3 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum tuberosum OX=4113 GN=ndhF PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-15
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 47
           LG YW TGSFEF DLF+IF+NLIYNNEVNFLFVTL AVLLFAGAVA
Sbjct: 194 LGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]
BLAST of MC00g0352 vs. ExPASy Swiss-Prot
Match: Q2QD43 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhF PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 47
           LGLYWTTGSFEF DLF+IF+NLI NNEVNFLF+TL AVLLFAGAVA
Sbjct: 194 LGLYWTTGSFEFRDLFQIFNNLIDNNEVNFLFLTLCAVLLFAGAVA 239

[Close]
BLAST of MC00g0352 vs. ExPASy Swiss-Prot
Match: Q2MIE0 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=ndhF PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 47
           LG YW TGSFEF DLF+IF+NLIYNNEVNFLFVTL AVLLFAGAV+
Sbjct: 194 LGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVS 239

[Close]
BLAST of MC00g0352 vs. NCBI nr
Match: QHR81848.1 (NADH dehydrogenase subunit F, partial [Packera cymbalaria] >QHR81857.1 NADH dehydrogenase subunit F, partial [Packera werneriifolia])

HSP 1 Score: 79.7 bits (195), Expect = 5.67e-18
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
          LG YW TGSFEFCDLF+IF+ LIYNNEVNF+FVTL AVLLFAGA+A
Sbjct: 16 LGFYWVTGSFEFCDLFQIFNKLIYNNEVNFVFVTLCAVLLFAGAIA 61

[Close]
BLAST of MC00g0352 vs. NCBI nr
Match: YP_009738250.1 (NADH dehydrogenase subunit 5 [Siraitia siamensis] >QIB71643.1 NADH dehydrogenase subunit 5 [Siraitia siamensis])

HSP 1 Score: 84.0 bits (206), Expect = 2.97e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
           LGLYWTTGSFEF DLFKIF+NLIYNNEVNFLFVTL AVLLFAGAVA
Sbjct: 194 LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]
BLAST of MC00g0352 vs. NCBI nr
Match: CAM59971.2 (NADH dehydrogenase subunit F, partial [Hedera helix])

HSP 1 Score: 79.3 bits (194), Expect = 5.44e-17
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
          LG YW TGSFEF DLFKIF NLIYNNEVNFLFVTL AVLLFAGAVA
Sbjct: 31 LGFYWITGSFEFRDLFKIFSNLIYNNEVNFLFVTLCAVLLFAGAVA 76

[Close]
BLAST of MC00g0352 vs. NCBI nr
Match: QHR81692.1 (NADH dehydrogenase subunit F, partial [Drymocallis glandulosa])

HSP 1 Score: 77.0 bits (188), Expect = 6.60e-17
Identity = 39/46 (84.78%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
          LG YW TGSFEF DLF+IF+NLIYNNEVNFLFVT  AVLLFAGAVA
Sbjct: 16 LGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTFCAVLLFAGAVA 61

[Close]
BLAST of MC00g0352 vs. NCBI nr
Match: ABV65185.1 (NADH-plastoquinone oxidoreductase subunit 5, partial [Connarus conchocarpus])

HSP 1 Score: 80.5 bits (197), Expect = 7.99e-17
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
           LGLYWTTGSFEF DLF+IF+NLIYNNEVNFLFVTL A LLFAGAVA
Sbjct: 103 LGLYWTTGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAFLLFAGAVA 148

[Close]
BLAST of MC00g0352 vs. ExPASy TrEMBL
Match: A0A6C0UCC8 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Siraitia siamensis OX=2695833 GN=ndhF PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.44e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
           LGLYWTTGSFEF DLFKIF+NLIYNNEVNFLFVTL AVLLFAGAVA
Sbjct: 194 LGLYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]
BLAST of MC00g0352 vs. ExPASy TrEMBL
Match: A7WN41 (NADH dehydrogenase subunit F (Fragment) OS=Hedera helix OX=4052 GN=ndhF PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.63e-17
Identity = 41/46 (89.13%), Postives = 41/46 (89.13%), Query Frame = 0 

Query: 1  LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
          LG YW TGSFEF DLFKIF NLIYNNEVNFLFVTL AVLLFAGAVA
Sbjct: 31 LGFYWITGSFEFRDLFKIFSNLIYNNEVNFLFVTLCAVLLFAGAVA 76

[Close]
BLAST of MC00g0352 vs. ExPASy TrEMBL
Match: A9XUM5 (NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Connarus conchocarpus OX=32210 GN=ndhF PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.87e-17
Identity = 41/46 (89.13%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
           LGLYWTTGSFEF DLF+IF+NLIYNNEVNFLFVTL A LLFAGAVA
Sbjct: 103 LGLYWTTGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAFLLFAGAVA 148

[Close]
BLAST of MC00g0352 vs. ExPASy TrEMBL
Match: A0A6H0ERW7 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cyclanthera pedata OX=198836 GN=ndhF PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.00e-17
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
           LG YWTTGSFEF DLFKIF+NLIYNNEVNFLFVTL AVLLFAGAVA
Sbjct: 194 LGFYWTTGSFEFRDLFKIFNNLIYNNEVNFLFVTLCAVLLFAGAVA 239

[Close]
BLAST of MC00g0352 vs. ExPASy TrEMBL
Match: A8W7H5 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Sinosenecio homogyniphyllus OX=479925 GN=ndhF PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.00e-17
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 46
           LG YW TGSFEFCDLF+IF+NLIYNNEVNF+FVTL AVLLFAGAVA
Sbjct: 194 LGFYWVTGSFEFCDLFQIFNNLIYNNEVNFVFVTLCAVLLFAGAVA 239

[Close]
BLAST of MC00g0352 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 67.0 bits (162), Expect = 4.5e-12
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   LGLYWTTGSFEFCDLFKIFHNLIYNNEVNFLFVTLSAVLLFAGAVA 47
           LGLYW TGSFEF DLF+IF+NLI NN VN LF+TL A LLF G +A
Sbjct: 194 LGLYWITGSFEFQDLFEIFNNLILNNRVNLLFLTLCAFLLFVGPIA 239

The following BLAST results are available for this feature:
BLAST of MC00g0352 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q68RV95.5e-1589.13NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Panax ginseng OX=4054... [more]
B1NWJ67.2e-1584.78NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta OX=... [more]
Q2VED39.4e-1586.96NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum tuberosum OX=... [more]
Q2QD432.1e-1486.96NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=36... [more]
Q2MIE02.1e-1484.78NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum... [more]
BLAST of MC00g0352 vs. NCBI nr
Match NameE-valueIdentityDescription
QHR81848.15.67e-1882.61NADH dehydrogenase subunit F, partial [Packera cymbalaria] >QHR81857.1 NADH dehy... [more]
YP_009738250.12.97e-1793.48NADH dehydrogenase subunit 5 [Siraitia siamensis] >QIB71643.1 NADH dehydrogenase... [more]
CAM59971.25.44e-1789.13NADH dehydrogenase subunit F, partial [Hedera helix][more]
QHR81692.16.60e-1784.78NADH dehydrogenase subunit F, partial [Drymocallis glandulosa][more]
ABV65185.17.99e-1789.13NADH-plastoquinone oxidoreductase subunit 5, partial [Connarus conchocarpus][more]
BLAST of MC00g0352 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6C0UCC81.44e-1793.48NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Siraitia siamensis OX... [more]
A7WN412.63e-1789.13NADH dehydrogenase subunit F (Fragment) OS=Hedera helix OX=4052 GN=ndhF PE=4 SV=... [more]
A9XUM53.87e-1789.13NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Connarus conchocarpus ... [more]
A0A6H0ERW75.00e-1791.30NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cyclanthera pedata OX... [more]
A8W7H55.00e-1786.96NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Sinoseneci... [more]
BLAST of MC00g0352 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01010.14.5e-1271.74NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g0352.1MC00g0352.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042773 ATP synthesis coupled electron transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding