MC00g0348 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC00g0348
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionembryo defective 2735
Locationscaffold7: 143851 .. 143989 (-)
RNA-Seq ExpressionMC00g0348
SyntenyMC00g0348
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGTTATATGCTGCAAGTTGGGTCCGGGACATTGCTCCCGACCTACGACCAAATGACTATAAGATGGAAGAAAGTGAAAATAAAACAATTGGAGCAAAAAGTACATCTAAAGAGAGAACCTTCAACACTAGAAGATCTT

mRNA sequence

AAGTTATATGCTGCAAGTTGGGTCCGGGACATTGCTCCCGACCTACGACCAAATGACTATAAGATGGAAGAAAGTGAAAATAAAACAATTGGAGCAAAAAGTACATCTAAAGAGGAACCTTCAACACTAGAAGATCTT

Coding sequence (CDS)

AAGTTATATGCTGCAAGTTGGGTCCGGGACATTGCTCCCGACCTACGACCAAATGACTATAAGATGGAAGAAAGTGAAAATAAAACAATTGGAGCAAAAAGTACATCTAAAGAGGAACCTTCAACACTAGAAGATCTT

Protein sequence

KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKEEPSTLEDL
Homology
BLAST of MC00g0348 vs. NCBI nr
Match: XP_022144745.1 (uncharacterized protein LOC111014361 [Momordica charantia] >XP_022144746.1 uncharacterized protein LOC111014361 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.99e-16
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKE-EPSTLEDL 46
          +LYAASWVRDI PDLRPNDYK+EESENKT  AKS SKE EPSTLEDL
Sbjct: 53 RLYAASWVRDIGPDLRPNDYKVEESENKTNAAKSASKEKEPSTLEDL 99

BLAST of MC00g0348 vs. NCBI nr
Match: KAG7017475.1 (hypothetical protein SDJN02_19340 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 8.94e-15
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKE-EPSTLEDL 46
          +LYAASWVRDI P+LRPNDYKMEESENK   AKS  KE EPSTLEDL
Sbjct: 53 RLYAASWVRDIGPELRPNDYKMEESENKKNSAKSAPKEKEPSTLEDL 99

BLAST of MC00g0348 vs. NCBI nr
Match: XP_023522298.1 (uncharacterized protein LOC111786187 [Cucurbita pepo subsp. pepo] >XP_023528947.1 uncharacterized protein LOC111791710 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 3.56e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKE-EPSTLEDL 46
          +LYAASWVRDI P+LRPNDYK+EESENK   AKS  KE EPSTLEDL
Sbjct: 53 RLYAASWVRDIGPELRPNDYKVEESENKKNSAKSAPKEKEPSTLEDL 99

BLAST of MC00g0348 vs. NCBI nr
Match: XP_022934670.1 (uncharacterized protein LOC111441792 [Cucurbita moschata] >KAG6580719.1 hypothetical protein SDJN03_20721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 3.56e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKE-EPSTLEDL 46
          +LYAASWVRDI P+LRPNDYK+EESENK   AKS  KE EPSTLEDL
Sbjct: 53 RLYAASWVRDIGPELRPNDYKVEESENKKNSAKSAPKEKEPSTLEDL 99

BLAST of MC00g0348 vs. NCBI nr
Match: XP_038905860.1 (uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905861.1 uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905862.1 uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905864.1 uncharacterized protein LOC120091803 [Benincasa hispida])

HSP 1 Score: 71.6 bits (174), Expect = 4.92e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKEE-PSTLEDL 46
          +LYAASWVRDI PDLRPNDYK++ESENKT   KS  KE+ PSTLEDL
Sbjct: 53 RLYAASWVRDIGPDLRPNDYKVQESENKTNSGKSAPKEKVPSTLEDL 99

BLAST of MC00g0348 vs. ExPASy TrEMBL
Match: A0A6J1CSI2 (uncharacterized protein LOC111014361 OS=Momordica charantia OX=3673 GN=LOC111014361 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.62e-17
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKE-EPSTLEDL 46
          +LYAASWVRDI PDLRPNDYK+EESENKT  AKS SKE EPSTLEDL
Sbjct: 53 RLYAASWVRDIGPDLRPNDYKVEESENKTNAAKSASKEKEPSTLEDL 99

BLAST of MC00g0348 vs. ExPASy TrEMBL
Match: A0A6J1F8D8 (uncharacterized protein LOC111441792 OS=Cucurbita moschata OX=3662 GN=LOC111441792 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.72e-14
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKE-EPSTLEDL 46
          +LYAASWVRDI P+LRPNDYK+EESENK   AKS  KE EPSTLEDL
Sbjct: 53 RLYAASWVRDIGPELRPNDYKVEESENKKNSAKSAPKEKEPSTLEDL 99

BLAST of MC00g0348 vs. ExPASy TrEMBL
Match: A0A6J1J6G3 (uncharacterized protein LOC111481775 OS=Cucurbita maxima OX=3661 GN=LOC111481775 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.86e-14
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKE-EPSTLEDL 46
          +LYAASWVRDI P+LRPNDYK+EESENK   A+S  KE EPSTLEDL
Sbjct: 53 RLYAASWVRDIGPELRPNDYKVEESENKKNSAESAPKEKEPSTLEDL 99

BLAST of MC00g0348 vs. ExPASy TrEMBL
Match: A0A438JSJ7 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009684 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.48e-13
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 1   KLYAASWVRDIAPDLRPNDYKM-EESENKTIGAKSTSKE-EPSTLEDL 46
           +LYAASWVRDI P+LRPNDYK  EE+E+K +GA+ST+KE EPSTLEDL
Sbjct: 53  RLYAASWVRDIGPELRPNDYKKDEETEDKPVGARSTTKEKEPSTLEDL 100

BLAST of MC00g0348 vs. ExPASy TrEMBL
Match: A0A438EK86 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_073528 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.48e-13
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 1   KLYAASWVRDIAPDLRPNDYKM-EESENKTIGAKSTSKE-EPSTLEDL 46
           +LYAASWVRDI P+LRPNDYK  EE+E+K +GA+ST+KE EPSTLEDL
Sbjct: 53  RLYAASWVRDIGPELRPNDYKKDEETEDKPVGARSTTKEKEPSTLEDL 100

BLAST of MC00g0348 vs. TAIR 10
Match: AT5G06240.1 (embryo defective 2735 )

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-07
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 1  KLYAASWVRDIAPDLRPNDYKMEESENKTIGAKSTSKEEPSTLEDL 47
          +LYAASWVRDI P+LRPNDYK +        AK  ++ EPS LEDL
Sbjct: 53 RLYAASWVRDIGPELRPNDYKKQGDAEPKKQAKE-AENEPSVLEDL 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022144745.11.99e-1685.11uncharacterized protein LOC111014361 [Momordica charantia] >XP_022144746.1 uncha... [more]
KAG7017475.18.94e-1580.85hypothetical protein SDJN02_19340 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023522298.13.56e-1478.72uncharacterized protein LOC111786187 [Cucurbita pepo subsp. pepo] >XP_023528947.... [more]
XP_022934670.13.56e-1478.72uncharacterized protein LOC111441792 [Cucurbita moschata] >KAG6580719.1 hypothet... [more]
XP_038905860.14.92e-1476.60uncharacterized protein LOC120091803 [Benincasa hispida] >XP_038905861.1 unchara... [more]
Match NameE-valueIdentityDescription
A0A6J1CSI29.62e-1785.11uncharacterized protein LOC111014361 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1F8D81.72e-1478.72uncharacterized protein LOC111441792 OS=Cucurbita moschata OX=3662 GN=LOC1114417... [more]
A0A6J1J6G36.86e-1476.60uncharacterized protein LOC111481775 OS=Cucurbita maxima OX=3661 GN=LOC111481775... [more]
A0A438JSJ71.48e-1375.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_009684 PE=4 SV=1[more]
A0A438EK861.48e-1375.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_073528 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G06240.11.1e-0758.70embryo defective 2735 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..46
NoneNo IPR availablePANTHERPTHR36064EMBRYO DEFECTIVE 2735coord: 1..46
NoneNo IPR availablePANTHERPTHR36064:SF1EMBRYO DEFECTIVE 2735coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC00g0348.1MC00g0348.1mRNA