MC00g0320 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0320
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	zf-RVT domain-containing protein
Location	scaffold109: 125537 .. 125683 (+)
RNA-Seq Expression	MC00g0320
Synteny	MC00g0320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCTTTTTTGAGCTGGTTGGTTATTCGTGATCGTCTACCAATTCATGATCGTATTCGTTCTTGGTGTCCTTATAGTCCAGGTTATTGTGTCATTTATTCTGATGGGATTGAAATCTGGGACCACATTTTCTTTGATTATATGTTT

mRNA sequence

CATTCTTTTTTGAGCTGGTTGGTTATTCGTGATCGTCTACCAATTCATGATCGTATTCGTTCTTGGTGTCCTTATAGTCCAGGTTATTGTGTCATTTATTCTGATGGGATTGAAATCTGGGACCACATTTTCTTTGATTATATGTTT

Coding sequence (CDS)

CATTCTTTTTTGAGCTGGTTGGTTATTCGTGATCGTCTACCAATTCATGATCGTATTCGTTCTTGGTGTCCTTATAGTCCAGGTTATTGTGTCATTTATTCTGATGGGATTGAAATCTGGGACCACATTTTCTTTGATTATATGTTT

Protein sequence

HSFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFDYMF

Homology

[Close]

BLAST of MC00g0320 vs. NCBI nr
Match: XP_020887742.1 (uncharacterized protein LOC110230094 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 61.2 bits (147), Expect = 9.88e-10
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 1   HSFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           +SF++WL ++ RLP  DR+RSW    P  CVI S G+EI DH+FFD
Sbjct: 75  YSFITWLAMKGRLPTKDRLRSWGLNIPDACVICSSGLEIHDHLFFD 120

[Close]

BLAST of MC00g0320 vs. NCBI nr
Match: XP_019092669.1 (PREDICTED: uncharacterized protein LOC104744616 [Camelina sativa])

HSP 1 Score: 58.2 bits (139), Expect = 3.58e-08
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 1   HSFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFF 45
           +SF+ WL I+ RLP  DR+R+W    P  CV+ SDGIE  DH+FF
Sbjct: 194 YSFILWLAIKGRLPTRDRLRTWGLSIPTNCVLCSDGIETHDHLFF 238

[Close]

BLAST of MC00g0320 vs. NCBI nr
Match: XP_033129480.1 (uncharacterized protein LOC117126158 [Brassica rapa])

HSP 1 Score: 57.0 bits (136), Expect = 5.17e-08
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 1   HSFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFDYMF 49
           +SF+SWL +  RLP  DR+RSW    P  CV+YS  +E + H+FF+  F
Sbjct: 52  NSFISWLALSRRLPTRDRLRSWGLKVPEQCVLYSAAVETYHHLFFECQF 100

[Close]

BLAST of MC00g0320 vs. NCBI nr
Match: CAA7053093.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 57.4 bits (137), Expect = 7.72e-08
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 2   SFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           SF+SWLV++ RLP  DR+R+W    P  CV+ S GIE  DH+FF+
Sbjct: 650 SFISWLVMKKRLPTRDRLRAWGLGIPPECVLCSTGIESHDHLFFE 694

[Close]

BLAST of MC00g0320 vs. NCBI nr
Match: KAG7591594.1 (Reverse transcriptase zinc-binding domain [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 56.6 bits (135), Expect = 1.44e-07
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 2   SFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           SF++WL  + RLP  DR+RSW    P  CV+ S+G+E  DH+FF+
Sbjct: 320 SFITWLAFKGRLPTKDRLRSWGLNIPAACVLCSNGLETHDHLFFE 364

[Close]

BLAST of MC00g0320 vs. ExPASy TrEMBL
Match: A0A6D2KVH3 (Reverse transcriptase domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS40328 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.74e-08
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 2   SFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           SF+SWLV++ RLP  DR+R+W    P  CV+ S GIE  DH+FF+
Sbjct: 650 SFISWLVMKKRLPTRDRLRAWGLGIPPECVLCSTGIESHDHLFFE 694

[Close]

BLAST of MC00g0320 vs. ExPASy TrEMBL
Match: A0A1J3E3A1 (zf-RVT domain-containing protein (Fragment) OS=Noccaea caerulescens OX=107243 GN=GA_TR1919_c3_g1_i1_g.6033 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.91e-08
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 2   SFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           SF++WLV++ RLP  DR+R W    P  CV+ S GIE  DH+FF+
Sbjct: 74  SFIAWLVLKRRLPTRDRLRRWGLTIPPDCVLCSTGIESHDHLFFE 118

[Close]

BLAST of MC00g0320 vs. ExPASy TrEMBL
Match: A0A1J3GJS3 (LINE-1 retrotransposable element ORF2 protein OS=Noccaea caerulescens OX=107243 GN=LE_TR3247_c0_g1_i1_g.10759 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.79e-07
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 2   SFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           SF++WLV++ RLP  DR+R W    P  CV+ S GIE  DH+FF+
Sbjct: 898 SFIAWLVLKRRLPTRDRLRRWGLTIPPDCVLCSTGIESHDHLFFE 942

[Close]

BLAST of MC00g0320 vs. ExPASy TrEMBL
Match: A0A6D2IGT6 (zf-RVT domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS13073 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.25e-07
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 2   SFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           SF++WL +++RLP  DR+R+W    P  CV+   G E  DH+FFD
Sbjct: 76  SFITWLAVQNRLPTKDRLRNWGLNVPAACVLCISGTETHDHLFFD 120

[Close]

BLAST of MC00g0320 vs. ExPASy TrEMBL
Match: A0A3N6RE04 (zf-RVT domain-containing protein (Fragment) OS=Brassica cretica OX=69181 GN=DY000_00021630 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.36e-07
Identity = 20/46 (43.48%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 1   HSFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFD 46
           HSF++WL++R+RL   DR+RSW    P  C++    +E  +H+FFD
Sbjct: 168 HSFITWLIMRERLTTRDRLRSWGLQVPPECLLCGSSLESQNHLFFD 213

[Close]

BLAST of MC00g0320 vs. TAIR 10
Match: AT5G16486.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.3e-06
Identity = 20/49 (40.82%), Postives = 31/49 (63.27%), Query Frame = 0


Query: 1   HSFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFDYMF 50
           H+F+SW+ IR RLP  D++ SW  + P  C++ +   E   H+FFD +F
Sbjct: 157 HAFISWVNIRHRLPTRDKLLSWGLHVPSLCLLCNAFDETRQHLFFDCVF 205

[Close]

BLAST of MC00g0320 vs. TAIR 10
Match: AT5G18880.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 42.0 bits (97), Expect = 1.6e-04
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = 0


Query: 2   SFLSWLVIRDRLPIHDRIRSWCPYSPGYCVIYSDGIEIWDHIFFDYMF 50
           S ++W+   +RLP  DR+R W    P   V+ S+G E   H+FF+  F
Sbjct: 141 SLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSF 188

The following BLAST results are available for this feature:

BLAST of MC00g0320 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020887742.1	9.88e-10	54.35	uncharacterized protein LOC110230094 [Arabidopsis lyrata subsp. lyrata]	[more]
XP_019092669.1	3.58e-08	53.33	PREDICTED: uncharacterized protein LOC104744616 [Camelina sativa]	[more]
XP_033129480.1	5.17e-08	46.94	uncharacterized protein LOC117126158 [Brassica rapa]	[more]
CAA7053093.1	7.72e-08	53.33	unnamed protein product [Microthlaspi erraticum]	[more]
KAG7591594.1	1.44e-07	48.89	Reverse transcriptase zinc-binding domain [Arabidopsis thaliana x Arabidopsis ar...	[more]

BLAST of MC00g0320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6D2KVH3	3.74e-08	53.33	Reverse transcriptase domain-containing protein OS=Microthlaspi erraticum OX=168...	[more]
A0A1J3E3A1	5.91e-08	51.11	zf-RVT domain-containing protein (Fragment) OS=Noccaea caerulescens OX=107243 GN...	[more]
A0A1J3GJS3	1.79e-07	51.11	LINE-1 retrotransposable element ORF2 protein OS=Noccaea caerulescens OX=107243 ...	[more]
A0A6D2IGT6	2.25e-07	46.67	zf-RVT domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LO...	[more]
A0A3N6RE04	4.36e-07	43.48	zf-RVT domain-containing protein (Fragment) OS=Brassica cretica OX=69181 GN=DY00...	[more]

BLAST of MC00g0320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16486.1	1.3e-06	40.82	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT5G18880.1	1.6e-04	37.50	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 1..46 e-value: 3.2E-7 score: 30.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0320.1	MC00g0320.1	mRNA