MC00g0034 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0034
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Transposon protein, putative, CACTA, En/Spm sub-class
Location	scaffold31: 582591 .. 582752 (+)
RNA-Seq Expression	MC00g0034
Synteny	MC00g0034

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGATGAGATCGACACATAAGGCATATAGGACAAAATTGCGCCAAAACTACCTGAGTTATCCCACACTTGAGATTGCGTGCAACAATCCTCCAAAGCGGTTGTTGGCAAAACCAGACGATTGGAACATGTTGTGCGATAGATGGAAGACAGATGAGTGGAAG

mRNA sequence

GAGATGAGATCGACACATAAGGCATATAGGACAAAATTGCGCCAAAACTACCTGAGTTATCCCACACTTGAGATTGCGTGCAACAATCCTCCAAAGCGGTTGTTGGCAAAACCAGACGATTGGAACATGTTGTGCGATAGATGGAAGACAGATGAGTGGAAG

Coding sequence (CDS)

GAGATGAGATCGACACATAAGGCATATAGGACAAAATTGCGCCAAAACTACCTGAGTTATCCCACACTTGAGATTGCGTGCAACAATCCTCCAAAGCGGTTGTTGGCAAAACCAGACGATTGGAACATGTTGTGCGATAGATGGAAGACAGATGAGTGGAAG

Protein sequence

EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK

Homology

[Close]

BLAST of MC00g0034 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 1.03e-07
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 1  EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
          +M+ + K YR+ L Q Y  +     A  NPP+RL   P+DWN LCDRW+T EWK
Sbjct: 37 QMQISFKQYRSDLHQYYCEFEDPVEARANPPERL-TNPEDWNHLCDRWETPEWK 89

[Close]

BLAST of MC00g0034 vs. NCBI nr
Match: TYJ96742.1 (uncharacterized protein E5676_scaffold986G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.20e-06
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1   EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
           EM++T + +R  L + Y  +     A  NPP R+    +DWNM+CDRW+TD WK
Sbjct: 451 EMQNTFREFRADLHKYYCEFDDPVEARANPPNRITL--EDWNMMCDRWETDAWK 502

[Close]

BLAST of MC00g0034 vs. NCBI nr
Match: KAA0062811.1 (transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 2.20e-06
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1   EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
           EM++T + +R  L + Y  +     A  NPP R+    +DWNM+CDRW+TD WK
Sbjct: 595 EMQNTFREFRADLHKYYCEFDDPVEARANPPNRITL--EDWNMMCDRWETDAWK 646

[Close]

BLAST of MC00g0034 vs. NCBI nr
Match: KAA0025954.1 (formin-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 52.0 bits (123), Expect = 4.01e-06
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 2  MRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
          M +T + +R  L + Y  +     A  NPPKR+    ++WNM+CDRW+TD WK
Sbjct: 1  MHNTFREFRASLHKYYCKFDDFIEARANPPKRITH--ENWNMMCDRWETDAWK 51

[Close]

BLAST of MC00g0034 vs. NCBI nr
Match: KAA0056379.1 (hypothetical protein E6C27_scaffold186G001230 [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 5.64e-06
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1   EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
           +M++T + +R  L + Y  +     A  NPP R+    +DWNM+CDRW+TD WK
Sbjct: 565 KMQNTFREFRANLHKYYCQFDDSVEARANPPNRITH--EDWNMMCDRWETDAWK 616

[Close]

BLAST of MC00g0034 vs. ExPASy TrEMBL
Match: A0A6J1DUH3 (uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023212 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.98e-08
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 1  EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
          +M+ + K YR+ L Q Y  +     A  NPP+RL   P+DWN LCDRW+T EWK
Sbjct: 37 QMQISFKQYRSDLHQYYCEFEDPVEARANPPERL-TNPEDWNHLCDRWETPEWK 89

[Close]

BLAST of MC00g0034 vs. ExPASy TrEMBL
Match: A0A5D3BA62 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00340 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.06e-06
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1   EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
           EM++T + +R  L + Y  +     A  NPP R+    +DWNM+CDRW+TD WK
Sbjct: 451 EMQNTFREFRADLHKYYCEFDDPVEARANPPNRITL--EDWNMMCDRWETDAWK 502

[Close]

BLAST of MC00g0034 vs. ExPASy TrEMBL
Match: A0A5A7VAV0 (Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00300 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.07e-06
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1   EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
           EM++T + +R  L + Y  +     A  NPP R+    +DWNM+CDRW+TD WK
Sbjct: 595 EMQNTFREFRADLHKYYCEFDDPVEARANPPNRITL--EDWNMMCDRWETDAWK 646

[Close]

BLAST of MC00g0034 vs. ExPASy TrEMBL
Match: A0A5A7SJT9 (Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002610 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.94e-06
Identity = 22/53 (41.51%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 2  MRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
          M +T + +R  L + Y  +     A  NPPKR+    ++WNM+CDRW+TD WK
Sbjct: 1  MHNTFREFRASLHKYYCKFDDFIEARANPPKRITH--ENWNMMCDRWETDAWK 51

[Close]

BLAST of MC00g0034 vs. ExPASy TrEMBL
Match: A0A5A7US78 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001230 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.73e-06
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 1   EMRSTHKAYRTKLRQNYLSYPTLEIACNNPPKRLLAKPDDWNMLCDRWKTDEWK 54
           +M++T + +R  L + Y  +     A  NPP R+    +DWNM+CDRW+TD WK
Sbjct: 565 KMQNTFREFRANLHKYYCQFDDSVEARANPPNRITH--EDWNMMCDRWETDAWK 616

The following BLAST results are available for this feature:

BLAST of MC00g0034 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0034 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156286.1	1.03e-07	48.15	uncharacterized protein LOC111023212 [Momordica charantia]	[more]
TYJ96742.1	2.20e-06	42.59	uncharacterized protein E5676_scaffold986G00340 [Cucumis melo var. makuwa]	[more]
KAA0062811.1	2.20e-06	42.59	transposon protein, putative, CACTA, En/Spm sub-class [Cucumis melo var. makuwa]	[more]
KAA0025954.1	4.01e-06	41.51	formin-like protein 4 isoform X2 [Cucumis melo var. makuwa]	[more]
KAA0056379.1	5.64e-06	40.74	hypothetical protein E6C27_scaffold186G001230 [Cucumis melo var. makuwa]	[more]

BLAST of MC00g0034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUH3	4.98e-08	48.15	uncharacterized protein LOC111023212 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5D3BA62	1.06e-06	42.59	DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VAV0	1.07e-06	42.59	Transposon protein, putative, CACTA, En/Spm sub-class OS=Cucumis melo var. makuw...	[more]
A0A5A7SJT9	1.94e-06	41.51	Formin-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5A7US78	2.73e-06	40.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MC00g0034 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0034.1	MC00g0034.1	mRNA