MC00g0023 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0023
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	scaffold31: 364525 .. 364724 (+)
RNA-Seq Expression	MC00g0023
Synteny	MC00g0023

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGAAAAGAAAATATTTTGATTTGGCTAGTCCACATGGAAAGCTAAACACAGCCGACAGAGTAAAAAAAAGATGTACATATCGGACATTTAACCCTAACTGTTGTATGTTATGCTTAAAAGCCAGGGAGGATCATTATCATATGTTCTTCAATTGTTCCTACAGCAGAATAATATGGAAAGCTATGCTTCCGAGCTTT

mRNA sequence

CCCAGAAAAGAAAATATTTTGATTTGGCTAGTCCACATGGAACTAAACACAGCCGACAGAGTAAAAAAAAGATGTACATATCGGACATTTAACCCTAACTGTTGTATGTTATGCTTAAAAGCCAGGGAGGATCATTATCATATGTTCTTCAATTGTTCCTACAGCAGAATAATATGGAAAGCTATGCTTCCGAGCTTT

Coding sequence (CDS)

CCCAGAAAAGAAAATATTTTGATTTGGCTAGTCCACATGGAACTAAACACAGCCGACAGAGTAAAAAAAAGATGTACATATCGGACATTTAACCCTAACTGTTGTATGTTATGCTTAAAAGCCAGGGAGGATCATTATCATATGTTCTTCAATTGTTCCTACAGCAGAATAATATGGAAAGCTATGCTTCCGAGCTTT

Protein sequence

PRKENILIWLVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIWKAMLPSF

Homology

[Close]

BLAST of MC00g0023 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 9.69e-09
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1    PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 60
            P+K    IW L+H  +NTADR++KR    T +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 985  PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 1044

Query: 61   ---KAML 63
               KA+L
Sbjct: 1045 SKAKALL 1051

[Close]

BLAST of MC00g0023 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.81e-08
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 59
           P+K    IW L+H  +NTADR++KR    T +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 783 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 842

[Close]

BLAST of MC00g0023 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.81e-08
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 59
           P+K    IW L+H  +NTADR++KR    T +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 877 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 936

[Close]

BLAST of MC00g0023 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.54e-08
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 60
           P+K    IW L+H  +NTADR++KR      +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 285 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLW 344

Query: 61  ---KAML 63
              KA+L
Sbjct: 345 SKAKALL 351

[Close]

BLAST of MC00g0023 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.55e-08
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 60
           P+K    IW L+H  +NTADR++KR      +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 328 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLW 387

Query: 61  ---KAML 63
              KA+L
Sbjct: 388 SKAKALL 394

[Close]

BLAST of MC00g0023 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.69e-09
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1    PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 60
            P+K    IW L+H  +NTADR++KR    T +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 985  PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 1044

Query: 61   ---KAML 63
               KA+L
Sbjct: 1045 SKAKALL 1051

[Close]

BLAST of MC00g0023 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.74e-09
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 59
           P+K    IW L+H  +NTADR++KR    T +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 783 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 842

[Close]

BLAST of MC00g0023 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 8.76e-09
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 59
           P+K    IW L+H  +NTADR++KR    T +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 877 PKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLW 936

[Close]

BLAST of MC00g0023 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.20e-08
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 60
           P+K    IW L+H  +NTADR++KR      +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 285 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLW 344

Query: 61  ---KAML 63
              KA+L
Sbjct: 345 SKAKALL 351

[Close]

BLAST of MC00g0023 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.20e-08
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1   PRKENILIW-LVHMELNTADRVKKRCTYRTFNPNCCMLCLKAREDHYHMFFNCSYSRIIW 60
           P+K    IW L+H  +NTADR++KR      +PN C +C K++ED  H+F +C YS+ +W
Sbjct: 328 PKKCKFFIWTLIHGCINTADRLQKRLPNWALSPNWCYMCNKSQEDINHLFIHCPYSQQLW 387

Query: 61  ---KAML 63
              KA+L
Sbjct: 388 SKAKALL 394

The following BLAST results are available for this feature:

BLAST of MC00g0023 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0023 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039950.1	9.69e-09	44.78	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0044556.1	1.81e-08	45.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.81e-08	45.00	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	4.54e-08	43.28	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	4.55e-08	43.28	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MC00g0023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9I7	4.69e-09	44.78	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	8.74e-09	45.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TIB8	8.76e-09	45.00	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	2.20e-08	43.28	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	2.20e-08	43.28	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MC00g0023 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 3..59 e-value: 3.5E-8 score: 34.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0023.1	MC00g0023.1	mRNA