MC00g0018 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0018
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA repair protein XRCC4-like
Location	scaffold31: 265520 .. 270129 (+)
RNA-Seq Expression	MC00g0018
Synteny	MC00g0018

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCGATCAGGCACACATGCCTGAAGCTTGAAGTGCCAAGTATCGCGCAATCGAACGAAAGCCGCTCCATCTTCTTCGTCAAAGGCACTTGGTTTCGCCACCGCTTCGATCTCTCCATTACCGACGGCCTCAATGCTTGGACTTGCCATGGTGGTGCCATTTCTTCAAACCACCACTTGTTATCGTTATCTCTAATTTCTCTTCTATTCTGCTCTTCTCACGCGTTCAATCTCATATTTCTATATTTTCCCCTGAATTTGTGGCACAGCGACGGAGGACGAGGTTCGATTGCGCGCCGAACAATGGGACCAAGAACCCTCGGACTATGTGGCGTTGGCGGAACGGCATTTAGGGTTTCAGCAGCCTGGTTCGGTCTATGGGTTCGCCGACGCTGGAAATGGGGACAAGAGGGTTTGTGCTTATTCGATTACTTAAACTGTCTTTTTCTTTCTGTCTTCCTTGGTCAAAATTGATGAGGTAGCGAAAATTCCATCAGCGGCTGTTCGTTGCTTAGGCACTATTTGAAAAGCTATAAACTTCCAATTTGACTTAGAATTGACCTCTTTGAACGCCTTTGTTCTTGTTGAATAGAGAGCGAATTGAATGGACAATTTGGCTGAACAGTTTAAAATCCCAGGTCTACTAGTGTCTGTGAATTAACATAGCAATGTGCTAATGGAGTGTTAAAAAAAACCAATAGTTTTAAAATGTAGATGCAATGATGTGAATAGCCTCTCAAGCTTAAACACGAGGCTAACAAAAATCAAGTGCCAGAAAACATAGTATTATGAATAATTATAAGAAATGAATTTTCCAAGAGAATCTTTAAAGAGTTAGGTGTTTTCTTTTCCTCTTATTTCTTTAAAAAAAAAAGGAAAAGGAAAAAAAGGAAAAAAAACATTTAAGACAAGGCAACTGCACTGAAAAGATCAACTCGATATATCCTATTATATCAGGTTCACCTTGGTTTAAATTTCTTAGTGTAGTAGCAATTAAGAATTTGGTTATGGTTAATCCATCTTTTCAGGTGGGCTTTGTGGTTTTGATATAATAGCATTATGATGCTGGAACAGGGATTCATTTATCTTGACAATAAAATTTATGTTTTCATTTTAATTTTTGGACCACTTTGATTGGCATTTCGTACTGGTTCTTCTGTAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAATTGTCAACCAGCATCTGATAATAAGAAGACAACTGCAGGAATATTGGACTTTCTCATGGATGCCAACATAAGGCTGAGCGTAATATCATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTGTTCAGATATTATTTGTATTTCTTGTTAATTTCTTGGGCATGTTGTTTAATTGCTGATAGAGTCACCATGGTATCTAGTTCATGAATATTGAATTTTAGTTAGAGCCTCTGTTTCCTTATGTGCTAGGCACATTGAAGTGCAATAGCTCTATAGGGTTTAAGTGCAAAGCCCAAGAAATACAAATAATACAAAAGAAAGTTTAGTATAAAGAATAACGAGATAATGAAAAATTAATGAAATGAAAGATTTTCTCAAGGGATTGTTGTTAATATATAGGTTTTTGGAGAACAGATTTCGTGTTTCATCGAAAATTAAATAAAAATAAAAAATTGTGGACAGAGGCATTCGCCTGGGTGAGGGTGCCTTGACCCATTGGCATTCAACTTTTAAAACAATGGTTAACAGCCCTTTGTTAGGTTTTATTGTGTGATCACTGACTAAACAAAAGCCATTATAGATGGTTTATTAACTTACTTATCTCTTCTAAGTTCTGGTTAGGAGTCAGGAAAACTCATTACTGTGAAAATTAAAGTGCATTTTATAGTTTAAAGAATGAATGATGAGGAAGAGTCCATTACATTCTTTATTTTAAATATTTATTTTGCTTATTTTATCTTCTTTACGGATCCTGGTAAAAATCATGCCAATTGCACTTCATTCTCTTTTCTTATAACTTTGATTTTTGTATGTATAGGAAGAGGTTGTCAGAAAAACACAATCGTTTGAGAGGCTGAAAGTTGAATCTGAGAATTGTTTGGCTCAAAGTGAGAAGATTAGTGGCGAAAAGGTGGAGTTCGAAACTGCAATTTATGCAAAGGTATTGAAAATTTCATATTCTTGTGTTTGACTTCACCCTGTCTATTTTATTCTTCGCCATTTCAATCAGTGAAATGTCATTTGGAATTATTGATTGATTCTTCAAAAGTTAAGTATGTGTCTTGTGGAAACGTTAAGCATCTTTACATGATTGCATTTTCTTTTTTTTGTTTGTTTTTTATTTTTTATTTTTTGGATAAGAAACAGAACTTTCATTGAGAGAAATGAAAAACATACCAAAAAAAAAAAAACAAAGAGGGCATACAAAAAAACAGTCTAACAAAGGGGAGCCCCTAAATAAAAAGGCTCCAATACAAAAGAATGAGACCTAACTGATAATTACAAAAGGCCTTGATGACTGAACTCCATAAGGAAGTACTAAACCTAATGAGATCCCAAACATAATCTACCGTTTTTCCCACCCCCTAAACAATCTATTATTCCTCTCTAGCCAGATACCCTATAATGAAGCCAAAAAGCCCGCCTGCCAAAGAAAATGGCCCCTGTCCCGAAAAGGGGGGAACAACAACACTTCCTCCATCATATAGCTAATAGTTTTATTACCCCAGACACTTCAATATAGGGAGAATGAGTATTTATCTGAGTCTACAATCAGGCAACCTTTTCATTGGCATTGTTCTACTTGTCAAGTGGTCATATGTGTTCGTGCCTCATTGATCAAGGTTGCTAGACTCTAGAACTTGGGAAATTGGTAAGAGGGATTCTTTTTCTACATTATAGTTGGAAGTTATCGGTTTTGGTTCCTTAGTGAGATATAGGGGAGGATAGTTATGTTTGCCCGCCCTGCCTCAACATGAATGATATACCAGACTAGACTTTGTTCAATATATAGGTAGGTCTAACTAGGATATCGATATGTCCTCAGCTCAAAATGAATTTGATAGAACTCATTTATTTACTTGAGGGAGGGAGAAACATTTCCAAGGGATGATTCTAGAGGTCCCTTATTTTCCTGACTCCTATCTCACCACTAATCAAAAGAATACCACCCGCTCGACTATATCTATATGCCAGTAAATAGTACTGATGTCACACTTGTTTCAAGTGTGATTAAAAAATGGGCGTTTTGAGGCCTATGAAAAGGGTCCTCAAAGGGCTTCCACTAATTGGAGGATGGTCACTCGGTCAGTCTCTGTTGTCATACTGCCACCATATTTGAACAACAACTTGCCATGAAGGCAGTTACTACATTCTGTTGTCAAGGAAACTCGTAGGATATTAAATCCTAGGTAGGTGGTCACTATGATTTGAACCTATTCCTTCTAAATTCTTTACTATTTACATTGATCCTTATTGACCTGACCACTAAGCCGACCTGACCACTAAGCCCCAACTCAGGATGCTAAAGTATTGAGTGGTATTGAGTGGGATTTGATGAGCTGATCTCATGAGATTACTTATCATACAAGTATATTAACATAATTTCTTCACATATTTTATCTCTTGGAATCCCATTGTCTCGTAAGTATCATAAACTAAAAGAAACTTATTATGAAAAATCATTCAAATGTATGAAAAGATTCAAAGTGATGAACATATTCTTCATGCCATATCCTATTTTGTAAGAAACGTGATATGTAATTGTGTTCTTATTGTGTTGCACCTCTGCTGCATATAGGAGATGATAAGTGGTCTTGTTACAATGTTTCTGTGATAATGAATGTCGATGGTAGTTTAAACTTATACTTGCTTCAAATTTTATATAACACGTCTATTACTGAAACGGCATCACTTGTTTCTACTTGAAGGCTATAAATGTTGTTTTTATTGCTTCCAGTTTCTCAATGTCTTGAACTCGAAGAAAGCAAAACTTAGAGCGTACAGAGATCAGCTTTCGAAACAGACTACTGGCAGCAGCAAGCTGAAACAAGAAGAGGAGTACTCCTCTGACAAAACCGAAACTTTTGACGATGAAAGCGATGCCGAAAAGAACTAACGAAGAATGAAGGAATGTTATATGCAATTAGTTAGGATGACACACACACATCTTTGGTAATGTTTCATGGCCAAAATCCCTCTCTTTCTCTCTACTGATTAAAGTTCTAACGGATTTTGTGGATTTTTGTAGTTTTAACTTGTTCTAACGTAAGCTATTGCTTGGACTGAGTTGTCATTTTATTTTATTTTTTGTGTAGAGCTTTGTTAACCTCTAGGAAACAGTGGGATAAGAGCGCTTTGATAGTCTCACGGAGCAATGCACTTATTCGTTCGCATAAAATGAAAGTTTACTATTAAACTGGGATTCAGATTCATATGATTAATCTATTGATAGATTTGTATCTCCGATAAATTATAAGAAATGTTGCGGTCTACGCTTATACAATCTTCATTGTATTGTTTACAATCTTTCTAAATCTAAAACACAATGAATTTTTGGTGCCACTGATTGTAAGGCAAGTTTGGCAAAGTAATGCTAAGG

mRNA sequence

ATGGACGCGATCAGGCACACATGCCTGAAGCTTGAAGTGCCAAGTATCGCGCAATCGAACGAAAGCCGCTCCATCTTCTTCGTCAAAGGCACTTGGTTTCGCCACCGCTTCGATCTCTCCATTACCGACGGCCTCAATGCTTGGACTTGCCATGGTGGTGCCATTTCTTCAAACCACCACTTGTTATCGTTATCGACGGAGGACGAGGTTCGATTGCGCGCCGAACAATGGGACCAAGAACCCTCGGACTATGTGGCGTTGGCGGAACGGCATTTAGGGTTTCAGCAGCCTGGTTCGGTCTATGGGTTCGCCGACGCTGGAAATGGGGACAAGAGGGAAGAGGTTGTCAGAAAAACACAATCGTTTGAGAGGCTGAAAGTTGAATCTGAGAATTGTTTGGCTCAAAGTGAGAAGATTAGTGGCGAAAAGGTGGAGTTCGAAACTGCAATTTATGCAAAGTTTCTCAATGTCTTGAACTCGAAGAAAGCAAAACTTAGAGCGTACAGAGATCAGCTTTCGAAACAGACTACTGGCAGCAGCAAGCTGAAACAAGAAGAGGAGTACTCCTCTGACAAAACCGAAACTTTTGACGATGAAAGCGATGCCGAAAAGAACTAACGAAGAATGAAGGAATGTTATATGCAATTAGTTAGGATGACACACACACATCTTTGGTAATGTTTCATGGCCAAAATCCCTCTCTTTCTCTCTACTGATTAAAGTTCTAACGGATTTTGTGGATTTTTGTAGTTTTAACTTGTTCTAACGTAAGCTATTGCTTGGACTGAGTTGTCATTTTATTTTATTTTTTGTGTAGAGCTTTGTTAACCTCTAGGAAACAGTGGGATAAGAGCGCTTTGATAGTCTCACGGAGCAATGCACTTATTCGTTCGCATAAAATGAAAGTTTACTATTAAACTGGGATTCAGATTCATATGATTAATCTATTGATAGATTTGTATCTCCGATAAATTATAAGAAATGTTGCGGTCTACGCTTATACAATCTTCATTGTATTGTTTACAATCTTTCTAAATCTAAAACACAATGAATTTTTGGTGCCACTGATTGTAAGGCAAGTTTGGCAAAGTAATGCTAAGG

Coding sequence (CDS)

ATGGACGCGATCAGGCACACATGCCTGAAGCTTGAAGTGCCAAGTATCGCGCAATCGAACGAAAGCCGCTCCATCTTCTTCGTCAAAGGCACTTGGTTTCGCCACCGCTTCGATCTCTCCATTACCGACGGCCTCAATGCTTGGACTTGCCATGGTGGTGCCATTTCTTCAAACCACCACTTGTTATCGTTATCGACGGAGGACGAGGTTCGATTGCGCGCCGAACAATGGGACCAAGAACCCTCGGACTATGTGGCGTTGGCGGAACGGCATTTAGGGTTTCAGCAGCCTGGTTCGGTCTATGGGTTCGCCGACGCTGGAAATGGGGACAAGAGGGAAGAGGTTGTCAGAAAAACACAATCGTTTGAGAGGCTGAAAGTTGAATCTGAGAATTGTTTGGCTCAAAGTGAGAAGATTAGTGGCGAAAAGGTGGAGTTCGAAACTGCAATTTATGCAAAGTTTCTCAATGTCTTGAACTCGAAGAAAGCAAAACTTAGAGCGTACAGAGATCAGCTTTCGAAACAGACTACTGGCAGCAGCAAGCTGAAACAAGAAGAGGAGTACTCCTCTGACAAAACCGAAACTTTTGACGATGAAAGCGATGCCGAAAAGAACTAA

Protein sequence

MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHHLLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKREEVVRKTQSFERLKVESENCLAQSEKISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFDDESDAEKN

Homology

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BLAST of MC00g0018 vs. ExPASy Swiss-Prot
Match: Q682V0 (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 7.1e-38
Identity = 104/245 (42.45%), Postives = 133/245 (54.29%), Query Frame = 0


Query: 5   RHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHHLLSL 64
           +HTCL+LE+             FVKGTW   RFD+S+TDG ++W C+             
Sbjct: 24  KHTCLRLEI-------SGADPIFVKGTWHNSRFDISVTDGSSSWICN------------- 83

Query: 65  STEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR------------ 124
           +TE+EV  RA QWDQ  S+Y+ LAE++LGFQQP SVY F+DA  G KR            
Sbjct: 84  ATEEEVAERAAQWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKL 143

Query: 125 -------------------------------EEVVRKTQSFERLKVESENCLAQSEKISG 184
                                          EEVV KT+SFE+++ E+E CLAQ EK+  
Sbjct: 144 EWRWKCKPSDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCD 203

Query: 185 EKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFDD-ES 206
           EK EFE+A YAKFL+VLN+KKAKLRA RD+        S    EEE S+DK E+F+   S
Sbjct: 204 EKTEFESATYAKFLSVLNAKKAKLRALRDK------EDSVRVVEEEESTDKAESFESGRS 242

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BLAST of MC00g0018 vs. NCBI nr
Match: XP_022141947.1 (DNA repair protein XRCC4-like [Momordica charantia])

HSP 1 Score: 343 bits (880), Expect = 1.24e-116
Identity = 191/248 (77.02%), Postives = 192/248 (77.42%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCH         
Sbjct: 54  MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCH--------- 113

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR-------- 120
               +TEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR        
Sbjct: 114 ----ATEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKRLSWTFDKE 173

Query: 121 -----------------------------------EEVVRKTQSFERLKVESENCLAQSE 180
                                              EEVVRKTQSFERLKVESENCLAQSE
Sbjct: 174 GMKLEWRWNCQPASDNKKTTAGILDFLMDANIRLSEEVVRKTQSFERLKVESENCLAQSE 233

Query: 181 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 205
           KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD
Sbjct: 234 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 288

[Close]

BLAST of MC00g0018 vs. NCBI nr
Match: XP_023553968.1 (DNA repair protein XRCC4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298 bits (763), Expect = 2.71e-100
Identity = 160/205 (78.05%), Postives = 175/205 (85.37%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKL+VP+ AQ +   SIF VKGTW+ HRFDLSITDGLNAWTCH         
Sbjct: 1   MDAIRHTCLKLQVPTDAQPDGRVSIF-VKGTWYPHRFDLSITDGLNAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKREEVVRKTQ 120
               +TEDEVRLRAEQWDQEPSDYV+LAER+LGFQQP SVYGFAD GNGDKREEVVRKTQ
Sbjct: 61  ----ATEDEVRLRAEQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKREEVVRKTQ 120

Query: 121 SFERLKVESENCLAQSEKISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSS 180
           SFE+LKVESE CLAQSE+I  EKVEFETA+YAKFLNVLN+KKAKLR YRDQ  KQTT SS
Sbjct: 121 SFEKLKVESEKCLAQSERICEEKVEFETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSS 180

Query: 181 KLKQEEEYSSDKTETFDDESDAEKN 205
           KLKQ++EYS DKTE+FDD+SDAEKN
Sbjct: 181 KLKQDDEYS-DKTESFDDDSDAEKN 190

[Close]

BLAST of MC00g0018 vs. NCBI nr
Match: XP_022971997.1 (DNA repair protein XRCC4 isoform X2 [Cucurbita maxima])

HSP 1 Score: 297 bits (761), Expect = 5.47e-100
Identity = 160/205 (78.05%), Postives = 174/205 (84.88%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVP+ AQ +   SIF VKGTW++HRFDLSITDGLNAWTCH         
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIF-VKGTWYQHRFDLSITDGLNAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKREEVVRKTQ 120
               +TEDEVRLRAEQWDQEPSDYV LAER+LGFQQP SVY FAD GNGDKREEVVRKTQ
Sbjct: 61  ----ATEDEVRLRAEQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKREEVVRKTQ 120

Query: 121 SFERLKVESENCLAQSEKISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSS 180
           SFE+LKVESE CLAQSE+I  EKVEFETA+YAKFLNVLN+KKAKLR YRDQ  KQTT SS
Sbjct: 121 SFEKLKVESEKCLAQSERICEEKVEFETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSS 180

Query: 181 KLKQEEEYSSDKTETFDDESDAEKN 205
           KLKQ++EYS DKTE+FDD+SDAEKN
Sbjct: 181 KLKQDDEYS-DKTESFDDDSDAEKN 190

[Close]

BLAST of MC00g0018 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa] >TYK06916.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa])

HSP 1 Score: 282 bits (722), Expect = 2.06e-93
Identity = 166/248 (66.94%), Postives = 174/248 (70.16%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVP+ AQ +E RS  FVKGTW  HRFDLSITDGL+AWTCH         
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDE-RSSIFVKGTWNHHRFDLSITDGLHAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR-------- 120
               +TEDEVRLRA QWDQEPSDYVALAER+LGFQQPGS+YGFADAGNG KR        
Sbjct: 61  ----ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKE 120

Query: 121 -----------------------------------EEVVRKTQSFERLKVESENCLAQSE 180
                                              EEVVRKTQS ERLK ESE CLAQSE
Sbjct: 121 GMKLEWRWKCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSE 180

Query: 181 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 205
           KI  EKVEFETAIYAKFLNVLN+KKAKLR YRDQLSKQTT  SKLKQEE YSSDKTE+FD
Sbjct: 181 KICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFD 233

[Close]

BLAST of MC00g0018 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 280 bits (715), Expect = 2.38e-92
Identity = 161/248 (64.92%), Postives = 176/248 (70.97%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVP+ AQ +   SIF VKGTW++HRFDLSITDGLNAWTCH         
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIF-VKGTWYQHRFDLSITDGLNAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR-------- 120
               +TEDEVRLRAEQWDQEPSDYV+LAER+LGFQQP SVYGFAD GNGDKR        
Sbjct: 61  ----ATEDEVRLRAEQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKE 120

Query: 121 -----------------------------------EEVVRKTQSFERLKVESENCLAQSE 180
                                              EEVVRKTQSFE+LKVESE CLAQSE
Sbjct: 121 GMKLEWRWKCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSE 180

Query: 181 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 205
           +I  EKVEFETA+YAKFLNVLN+KKAKLR YRDQ  KQTT SSKLKQ++EYS DKTE+FD
Sbjct: 181 RICEEKVEFETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYS-DKTESFD 233

[Close]

BLAST of MC00g0018 vs. ExPASy TrEMBL
Match: A0A6J1CL88 (DNA repair protein XRCC4-like OS=Momordica charantia OX=3673 GN=LOC111012197 PE=4 SV=1)

HSP 1 Score: 343 bits (880), Expect = 6.00e-117
Identity = 191/248 (77.02%), Postives = 192/248 (77.42%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCH         
Sbjct: 54  MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCH--------- 113

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR-------- 120
               +TEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR        
Sbjct: 114 ----ATEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKRLSWTFDKE 173

Query: 121 -----------------------------------EEVVRKTQSFERLKVESENCLAQSE 180
                                              EEVVRKTQSFERLKVESENCLAQSE
Sbjct: 174 GMKLEWRWNCQPASDNKKTTAGILDFLMDANIRLSEEVVRKTQSFERLKVESENCLAQSE 233

Query: 181 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 205
           KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD
Sbjct: 234 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 288

[Close]

BLAST of MC00g0018 vs. ExPASy TrEMBL
Match: A0A6J1I3G3 (DNA repair protein XRCC4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470647 PE=4 SV=1)

HSP 1 Score: 297 bits (761), Expect = 2.65e-100
Identity = 160/205 (78.05%), Postives = 174/205 (84.88%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVP+ AQ +   SIF VKGTW++HRFDLSITDGLNAWTCH         
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIF-VKGTWYQHRFDLSITDGLNAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKREEVVRKTQ 120
               +TEDEVRLRAEQWDQEPSDYV LAER+LGFQQP SVY FAD GNGDKREEVVRKTQ
Sbjct: 61  ----ATEDEVRLRAEQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKREEVVRKTQ 120

Query: 121 SFERLKVESENCLAQSEKISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSS 180
           SFE+LKVESE CLAQSE+I  EKVEFETA+YAKFLNVLN+KKAKLR YRDQ  KQTT SS
Sbjct: 121 SFEKLKVESEKCLAQSERICEEKVEFETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSS 180

Query: 181 KLKQEEEYSSDKTETFDDESDAEKN 205
           KLKQ++EYS DKTE+FDD+SDAEKN
Sbjct: 181 KLKQDDEYS-DKTESFDDDSDAEKN 190

[Close]

BLAST of MC00g0018 vs. ExPASy TrEMBL
Match: A0A5A7SK69 (DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002240 PE=4 SV=1)

HSP 1 Score: 282 bits (722), Expect = 9.95e-94
Identity = 166/248 (66.94%), Postives = 174/248 (70.16%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVP+ AQ +E RS  FVKGTW  HRFDLSITDGL+AWTCH         
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDE-RSSIFVKGTWNHHRFDLSITDGLHAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR-------- 120
               +TEDEVRLRA QWDQEPSDYVALAER+LGFQQPGS+YGFADAGNG KR        
Sbjct: 61  ----ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKE 120

Query: 121 -----------------------------------EEVVRKTQSFERLKVESENCLAQSE 180
                                              EEVVRKTQS ERLK ESE CLAQSE
Sbjct: 121 GMKLEWRWKCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSE 180

Query: 181 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 205
           KI  EKVEFETAIYAKFLNVLN+KKAKLR YRDQLSKQTT  SKLKQEE YSSDKTE+FD
Sbjct: 181 KICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFD 233

[Close]

BLAST of MC00g0018 vs. ExPASy TrEMBL
Match: A0A1S3BZW1 (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 282 bits (722), Expect = 9.95e-94
Identity = 166/248 (66.94%), Postives = 174/248 (70.16%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVP+ AQ +E RS  FVKGTW  HRFDLSITDGL+AWTCH         
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDE-RSSIFVKGTWNHHRFDLSITDGLHAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR-------- 120
               +TEDEVRLRA QWDQEPSDYVALAER+LGFQQPGS+YGFADAGNG KR        
Sbjct: 61  ----ATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKE 120

Query: 121 -----------------------------------EEVVRKTQSFERLKVESENCLAQSE 180
                                              EEVVRKTQS ERLK ESE CLAQSE
Sbjct: 121 GMKLEWRWKCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSE 180

Query: 181 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 205
           KI  EKVEFETAIYAKFLNVLN+KKAKLR YRDQLSKQTT  SKLKQEE YSSDKTE+FD
Sbjct: 181 KICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFD 233

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BLAST of MC00g0018 vs. ExPASy TrEMBL
Match: A0A6J1GJL0 (DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1)

HSP 1 Score: 280 bits (715), Expect = 1.15e-92
Identity = 161/248 (64.92%), Postives = 176/248 (70.97%), Query Frame = 0


Query: 1   MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHH 60
           MDAIRHTCLKLEVP+ AQ +   SIF VKGTW++HRFDLSITDGLNAWTCH         
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIF-VKGTWYQHRFDLSITDGLNAWTCH--------- 60

Query: 61  LLSLSTEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR-------- 120
               +TEDEVRLRAEQWDQEPSDYV+LAER+LGFQQP SVYGFAD GNGDKR        
Sbjct: 61  ----ATEDEVRLRAEQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKE 120

Query: 121 -----------------------------------EEVVRKTQSFERLKVESENCLAQSE 180
                                              EEVVRKTQSFE+LKVESE CLAQSE
Sbjct: 121 GMKLEWRWKCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSE 180

Query: 181 KISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFD 205
           +I  EKVEFETA+YAKFLNVLN+KKAKLR YRDQ  KQTT SSKLKQ++EYS DKTE+FD
Sbjct: 181 RICEEKVEFETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYS-DKTESFD 233

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BLAST of MC00g0018 vs. TAIR 10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-39
Identity = 104/245 (42.45%), Postives = 133/245 (54.29%), Query Frame = 0


Query: 5   RHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHHLLSL 64
           +HTCL+LE+             FVKGTW   RFD+S+TDG ++W C+             
Sbjct: 24  KHTCLRLEI-------SGADPIFVKGTWHNSRFDISVTDGSSSWICN------------- 83

Query: 65  STEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR------------ 124
           +TE+EV  RA QWDQ  S+Y+ LAE++LGFQQP SVY F+DA  G KR            
Sbjct: 84  ATEEEVAERAAQWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKL 143

Query: 125 -------------------------------EEVVRKTQSFERLKVESENCLAQSEKISG 184
                                          EEVV KT+SFE+++ E+E CLAQ EK+  
Sbjct: 144 EWRWKCKPSDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCD 203

Query: 185 EKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFDD-ES 206
           EK EFE+A YAKFL+VLN+KKAKLRA RD+        S    EEE S+DK E+F+   S
Sbjct: 204 EKTEFESATYAKFLSVLNAKKAKLRALRDK------EDSVRVVEEEESTDKAESFESGRS 242

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BLAST of MC00g0018 vs. TAIR 10
Match: AT3G23100.2 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-39
Identity = 104/245 (42.45%), Postives = 133/245 (54.29%), Query Frame = 0


Query: 5   RHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHGGAISSNHHLLSL 64
           +HTCL+LE+             FVKGTW   RFD+S+TDG ++W C+             
Sbjct: 24  KHTCLRLEI-------SGADPIFVKGTWHNSRFDISVTDGSSSWICN------------- 83

Query: 65  STEDEVRLRAEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKR------------ 124
           +TE+EV  RA QWDQ  S+Y+ LAE++LGFQQP SVY F+DA  G KR            
Sbjct: 84  ATEEEVAERAAQWDQPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKL 143

Query: 125 -------------------------------EEVVRKTQSFERLKVESENCLAQSEKISG 184
                                          EEVV KT+SFE+++ E+E CLAQ EK+  
Sbjct: 144 EWRWKCKPSDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCD 203

Query: 185 EKVEFETAIYAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFDD-ES 206
           EK EFE+A YAKFL+VLN+KKAKLRA RD+        S    EEE S+DK E+F+   S
Sbjct: 204 EKTEFESATYAKFLSVLNAKKAKLRALRDK------EDSVRVVEEEESTDKAESFESGRS 242

[Close]

BLAST of MC00g0018 vs. TAIR 10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4 )

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-15
Identity = 53/97 (54.64%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 113 EEVVRKTQSFERLKVESENCLAQSEKISGEKVEFETAIYAKFLNVLNSKKAKLRAYRDQL 172
           EEVV KT+SFE++K E+E CLAQ EK+  EK EFE A YAKFL+VLN+KKAKLRA RD+ 
Sbjct: 9   EEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAKLRAVRDK- 68

Query: 173 SKQTTGSSKLKQEEEYSSDKTETF-----DDESDAEK 205
                  S    EEE S+ K E+F     DDE   E+
Sbjct: 69  -----EDSVRAVEEEESTYKAESFESGRSDDEQSGEE 99

The following BLAST results are available for this feature:

BLAST of MC00g0018 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682V0	7.1e-38	42.45	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]

BLAST of MC00g0018 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141947.1	1.24e-116	77.02	DNA repair protein XRCC4-like [Momordica charantia]	[more]
XP_023553968.1	2.71e-100	78.05	DNA repair protein XRCC4 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022971997.1	5.47e-100	78.05	DNA repair protein XRCC4 isoform X2 [Cucurbita maxima]	[more]
XP_008455175.1	2.06e-93	66.94	PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair prot...	[more]
XP_022952201.1	2.38e-92	64.92	DNA repair protein XRCC4 [Cucurbita moschata]	[more]

BLAST of MC00g0018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL88	6.00e-117	77.02	DNA repair protein XRCC4-like OS=Momordica charantia OX=3673 GN=LOC111012197 PE=...	[more]
A0A6J1I3G3	2.65e-100	78.05	DNA repair protein XRCC4 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470647 ...	[more]
A0A5A7SK69	9.95e-94	66.94	DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BZW1	9.95e-94	66.94	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
A0A6J1GJL0	1.15e-92	64.92	DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1	[more]

BLAST of MC00g0018 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23100.1	5.0e-39	42.45	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT3G23100.2	5.0e-39	42.45	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	3.0e-15	54.64	DNA double-strand break repair and VJ recombination XRCC4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014751	DNA repair protein XRCC4-like, C-terminal	GENE3D	1.20.5.370		coord: 106..194 e-value: 2.4E-13 score: 51.9
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 122..203 e-value: 9.3E-8 score: 31.3
IPR010585	DNA repair protein XRCC4	PANTHER	PTHR28559	DNA REPAIR PROTEIN XRCC4	coord: 112..204 coord: 2..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..205
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 106..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0018.1	MC00g0018.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0140513	nuclear protein-containing complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding