MC00g0012 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC00g0012
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	extensin-like
Location	scaffold31: 168773 .. 169231 (-)
RNA-Seq Expression	MC00g0012
Synteny	MC00g0012

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCACTCAGCCCTTCTTAACGCCCTGATGGCGGCGGCGCTGCTCGCCTCTGCCGCCGCCGCTCCCCGGCCGGCACCCTCGCCTTCTCCGATGGCCACCCCTTCACCGCCCTGGAGATGGACCCCCAATCCAAAGCCTCCCACACCTCCGACGTCGTCGTCTCCGGCACCGTCTCCACAGCCCACTCCGCCGTCGTCTCCGGCACCGTCTCCATCTCCGACGACAGCCGTGGTCCCGCCGGCACCGCCAACTGCAGCCCCGGTTTCCCCACCACCGCAGACTCAGAGCCCTGCTCCGCCGGTGACTCCGCCGCCCGCTCAGGCTCCGGCTCCGTCGTGGATCGCCGGTCCGCCGGCAGACGCACTGGCGCCGTCGAAACATAAGAGCAACGCCTTAAAAAACCGATTCTCGCTGGTCGGATCAGTGGGCATTGGAGCCATGGCTGCTGCTGCTTTA

mRNA sequence

ATGCCTCACTCAGCCCTTCTTAACGCCCTGATGGCGGCGGCGCTGCTCGCCTCTGCCGCCGCCGCTCCCCGGCCGGCACCCTCGCCTTCTCCGATGGCCACCCCTTCACCGCCCTGGAGATGGACCCCCAATCCAAAGCCTCCCACACCTCCGACGTCGTCGTCTCCGGCACCGTCTCCACAGCCCACTCCGCCGTCGTCTCCGGCACCGTCTCCATCTCCGACGACAGCCGTGGTCCCGCCGGCACCGCCAACTGCAGCCCCGGTTTCCCCACCACCGCAGACTCAGAGCCCTGCTCCGCCGGTGACTCCGCCGCCCGCTCAGGCTCCGGCTCCGTCGTGGATCGCCGGTCCGCCGGCAGACGCACTGGCGCCGTCGAAACATAAGAGCAACGCCTTAAAAAACCGATTCTCGCTGGTCGGATCAGTGGGCATTGGAGCCATGGCTGCTGCTGCTTTA

Coding sequence (CDS)

ATGCCTCACTCAGCCCTTCTTAACGCCCTGATGGCGGCGGCGCTGCTCGCCTCTGCCGCCGCCGCTCCCCGGCCGGCACCCTCGCCTTCTCCGATGGCCACCCCTTCACCGCCCTGGAGATGGACCCCCAATCCAAAGCCTCCCACACCTCCGACGTCGTCGTCTCCGGCACCGTCTCCACAGCCCACTCCGCCGTCGTCTCCGGCACCGTCTCCATCTCCGACGACAGCCGTGGTCCCGCCGGCACCGCCAACTGCAGCCCCGGTTTCCCCACCACCGCAGACTCAGAGCCCTGCTCCGCCGGTGACTCCGCCGCCCGCTCAGGCTCCGGCTCCGTCGTGGATCGCCGGTCCGCCGGCAGACGCACTGGCGCCGTCGAAACATAAGAGCAACGCCTTAAAAAACCGATTCTCGCTGGTCGGATCAGTGGGCATTGGAGCCATGGCTGCTGCTGCTTTA

Protein sequence

MPHSALLNALMAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAPSPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL

Homology

[Close]

BLAST of MC00g0012 vs. NCBI nr
Match: XP_022141995.1 (extensin-like [Momordica charantia])

HSP 1 Score: 230 bits (587), Expect = 5.01e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 11  MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 70
           MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP
Sbjct: 1   MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 60

Query: 71  SPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKHKS 130
           SPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKHKS
Sbjct: 61  SPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKHKS 120

Query: 131 NALKNRFSLVGSVGIGAMAAAAL 153
           NALKNRFSLVGSVGIGAMAAAAL
Sbjct: 121 NALKNRFSLVGSVGIGAMAAAAL 143

[Close]

BLAST of MC00g0012 vs. NCBI nr
Match: XP_038887113.1 (anther-specific proline-rich protein APG-like [Benincasa hispida])

HSP 1 Score: 104 bits (260), Expect = 2.61e-25
Identity = 97/161 (60.25%), Postives = 113/161 (70.19%), Query Frame = 0


Query: 1   MPHSALLNALMAAALLASAAAAPRPAPSPSPM----ATPSPPWRWTPNPKPPTPPTSSSP 60
           MPHSALLNAL+AAALL SAAAAP PAPSP+P+    A+PSPPWRWTP  KPP    SS+P
Sbjct: 1   MPHSALLNALLAAALLFSAAAAPAPAPSPAPLHTPPASPSPPWRWTPITKPPP---SSTP 60

Query: 61  APSPQPTPP-SSPAPSPSPTTAVVPPA---PPTAAPVSPPPQTQSPAPPVTPPPAQAPAP 120
           +   +PTPP SSP P+PSPT  V+PP     PT  PVS P Q        +P P+ +P+P
Sbjct: 61  SHESKPTPPPSSPPPTPSPTP-VLPPHHHHAPTERPVSLPLQK-------SPSPSPSPSP 120

Query: 121 SWIAGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL 153
           SWIA PP +A APSK KS+A  NRFS+V SV I AMAAA L
Sbjct: 121 SWIAVPPPEAPAPSKAKSDAFNNRFSVVASVAIDAMAAALL 150

[Close]

BLAST of MC00g0012 vs. NCBI nr
Match: XP_011659717.1 (vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical protein Csa_017249 [Cucumis sativus])

HSP 1 Score: 100 bits (248), Expect = 1.05e-23
Identity = 90/158 (56.96%), Postives = 106/158 (67.09%), Query Frame = 0


Query: 1   MPHSALLNALMAAALLASAAA-APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPS 60
           MPHS LLNAL+AAALL SAAA +P P+PSP+P A+ SPPWRW P  KPPT P    P PS
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQP----PTPS 60

Query: 61  PQPTPPSSPAPSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWI 120
            + T PS+P PSP   T+V PPA    PPTA P SP                 +P+P+WI
Sbjct: 61  HE-TEPSTPPPSP---TSVPPPAHHDEPPTAQPDSP-----------------SPSPTWI 120

Query: 121 AGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL 153
           A PP++AL+PSK KS+  KN FS+VGSV IGAMAAAAL
Sbjct: 121 AEPPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133

[Close]

BLAST of MC00g0012 vs. ExPASy TrEMBL
Match: A0A6J1CJN4 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1)

HSP 1 Score: 230 bits (587), Expect = 2.42e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 11  MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 70
           MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP
Sbjct: 1   MAAALLASAAAAPRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAP 60

Query: 71  SPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKHKS 130
           SPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKHKS
Sbjct: 61  SPSPTTAVVPPAPPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWIAGPPADALAPSKHKS 120

Query: 131 NALKNRFSLVGSVGIGAMAAAAL 153
           NALKNRFSLVGSVGIGAMAAAAL
Sbjct: 121 NALKNRFSLVGSVGIGAMAAAAL 143

[Close]

BLAST of MC00g0012 vs. ExPASy TrEMBL
Match: A0A0A0K238 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 5.10e-24
Identity = 90/158 (56.96%), Postives = 106/158 (67.09%), Query Frame = 0


Query: 1   MPHSALLNALMAAALLASAAA-APRPAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPS 60
           MPHS LLNAL+AAALL SAAA +P P+PSP+P A+ SPPWRW P  KPPT P    P PS
Sbjct: 1   MPHSLLLNALLAAALLFSAAAISPSPSPSPTPPASLSPPWRWAPITKPPTQP----PTPS 60

Query: 61  PQPTPPSSPAPSPSPTTAVVPPA----PPTAAPVSPPPQTQSPAPPVTPPPAQAPAPSWI 120
            + T PS+P PSP   T+V PPA    PPTA P SP                 +P+P+WI
Sbjct: 61  HE-TEPSTPPPSP---TSVPPPAHHDEPPTAQPDSP-----------------SPSPTWI 120

Query: 121 AGPPADALAPSKHKSNALKNRFSLVGSVGIGAMAAAAL 153
           A PP++AL+PSK KS+  KN FS+VGSV IGAMAAAAL
Sbjct: 121 AEPPSEALSPSKAKSDGFKNSFSMVGSVAIGAMAAAAL 133

[Close]

BLAST of MC00g0012 vs. TAIR 10
Match: AT1G68725.1 (arabinogalactan protein 19 )

HSP 1 Score: 41.2 bits (95), Expect = 8.8e-04
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 25  PAPSPSPMATPSPPWRWTPNPKPPTPPTSSSPAPSPQPTPPSSPAPSPSPTTAVVPPAPP 84
           PAP  +P+ +P+     TP P+PP  P +S+P  SP P  P     SP PT     PA P
Sbjct: 83  PAPKVAPVISPA-----TPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPT-----PASP 142

Query: 85  TAAPVSPPPQTQSPAP-PVTPPPAQAPAPSWIAGPPADALAPSKHK 130
             AP SPPP   SP P PV+PPP QAP+P  I+ PPA A AP+KHK
Sbjct: 143 PPAPASPPPAPASPPPAPVSPPPVQAPSP--ISLPPAPAPAPTKHK 176

The following BLAST results are available for this feature:

BLAST of MC00g0012 vs.


Match Name	E-value	Identity	Description

BLAST of MC00g0012 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141995.1	5.01e-75	100.00	extensin-like [Momordica charantia]	[more]
XP_038887113.1	2.61e-25	60.25	anther-specific proline-rich protein APG-like [Benincasa hispida]	[more]
XP_011659717.1	1.05e-23	56.96	vegetative cell wall protein gp1 [Cucumis sativus] >KGN43745.1 hypothetical prot...	[more]

BLAST of MC00g0012 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJN4	2.42e-75	100.00	extensin-like OS=Momordica charantia OX=3673 GN=LOC111012233 PE=4 SV=1	[more]
A0A0A0K238	5.10e-24	56.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064060 PE=4 SV=1	[more]

BLAST of MC00g0012 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68725.1	8.8e-04	49.06	arabinogalactan protein 19	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 51..63 score: 44.62 coord: 63..84 score: 37.27 coord: 17..29 score: 29.23 coord: 31..47 score: 37.65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC00g0012.1	MC00g0012.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane