LsiUNG000800 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsiUNG000800
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description50S ribosomal protein L35
Locationchr00: 2456020 .. 2460426 (-)
RNA-Seq ExpressionLsiUNG000800
SyntenyLsiUNG000800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATCATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCTTTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTTGAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTCTCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGAGTGAGGTGGGTAGGAAGAATTGTTAGTGGATTGTGGAAGGAGTAAGAATGTCGTAGGCCCTTTAAGGGCTGTTCGGAATCAGGTTTAGAATGAGATTGAGTTGTTATGTAATCAAAAACCCAAGTTTAGATTAAGTGTTTTGGGCCCGATTTGTAATACCAAACTTATTCCTTCCCACAGTTTTAATCTCAACCCTCTTTTCTACCGTTTTCACGCTTCATGATTCCATTTCCATTCCGCCTTCGATTTCTCACACATCCCAACACTCTTCTGATTCTCAATAATCATGATTACATTCCAGCCTCCTAAACAGCCCCTTAGAGAACGATAATGGAGAGACATTATGAAGGAACAGAGATTGAGGCGATAGTTTCCTTTTTTTTCCTCTCGCTCTACGCTTCAGTAGTTCTTTTAGACCTTTCATAGAGGGTTTAGATTGGAGTCCTATTGCAGACACCGGACAATGACAAGGCTGAGTTGAACTCTTCCTAATGATTTTGGGTTTTGAGAGGAATAAAGTTCCTCCCTTTAGTCTTATTGGCTTTCCCTTGTTGTGGAAGGTTAAAATTTCCAAGAAGGTGAAATTCTTTGTTTGGCAGATCTTTTGCAGGAGAATTGCCACGTTGGACCCTGTTTCAAGGAATTTATCTTGTATGATTGGGCCAAAGTGCCCTATTCTCTTTGTAAGAGTGTGGCTGAGGATTCAACCACCCTTTTGGGTGTGATTTTTGTCATCTCTATATGGAGATTGGTTTTTGTAGTTTATGGTGGCTTGAGCAATTTTGTGGGGCCTTGTAACAATAGACTTCTTGAAAGGTTGAAAGGTTGAAGAGAGGATGTGCAGGCTTTTCTTCTTAGGTTCCATTTCTCACTTTAGGCCATGGCTTTTAATGCTTTTTGTAATTTTCCTTCCAAGTGTCATTTTTGTTTTAGTTTGGCTTCTTTTGTTTGAGGTTTTTTTTTAATATATTTTTTATGCCCTCTGTATTTTATCATAAGAATTTCATCAACAAAATGTGTGGGGGAGAATATTTTCTTATCTATACACTAGAGTTGCATCCGTGTCCTAAACTAATAATAGTAATGAGTAAAATTACTATAGAAAACACAAGACTACTAAACTTTTAGGGAGCATTTGAAGCTTAAGTTGGTTATAGTCTATGTTTGGAGTGTAGACTGTTTCAGTCTAGGTTATAATAGTTTGTGTCTGAGATGCAAATTATTTTAGTTTAGATGAGAAATAGTAAACACGGTAACAAAGAGAGAAAAAGATAAATAAGTAAGAAATAGCAAACATTGTAACAAAGAGGGATTTGAAATAGTAATACTACAGTTAATTATAGGTTATAATAATTGGAAATCAATTATTTTAATTGGAACCCATAGCCTAAACACCCCCATACCTAACCAACTGGAATAAAGCAATGTCTCTCTACCTGTTAGATATTGTGTTGTCGGGCCTTTGTTTTCTTCTTTATAAAACGTTTCGTGCCTTTGACAACCAAGGTTCGAAATATCGATGTCGATGGAAATATTGACGTCTCGATTTTATGGAAATATCAATATCGATGGAAATTTCGGGAAAATTTATGGAAATTTATAGAAATTGTTATAATTAATTAATGAAACTTTGATAATGGCTTAATTAAACTATAACTGACTATTTTTAATCATAATTTCTATAAATTAAAACAATATTTAGATGTCTATTGTAAATGTCTGAGTAACGGTTGATACGAGAGCAGAATTTTAAAAAAGAAATGAAAAAATAATTACAAAATTTAATGAAAAAAGTTTGATTAAGCTTAAAAATAAATATAGATTATTTTTTTTGGGGGGGGGGTTTCAAATTCAATTTCTTTATAAATGAAAGTTTTGGGTGGAAAATAAATCTAAAAATTGAGAAAAGTTGGAAATTAAAAAAAAATAGCACATAAAAAATGCTTAATCTTTTGTTCAAAATGACATTGGTGTATGAAACTATTGAATTGTGTATAATCAGACCATAAAATTGAAAATTTTGAACTAAGCTAACATAGTTAATCAGAAAAAAAAAATTGAAAATTTCTCGAAATGTCAAAATTTCTCAAATTTTTTTCGAACTCTCGAAATTTCGTCAAAATGGGGAGAATCGAAATATTCTTGAAATCTCAAAAATTTTCGAAATTTTCTCAAAATTTCGTCGAACTTGGGAGAAAAACAAAATTTTCCTCCAACAAGATTTTGAGACGTTCGAAATCTTAAAATTTTGAGATTTCGGAAAATTTTCTCTTTGCTGACAACTCACTGTGTAATAATTAAAACATGAAGGACGTGTTGCATCTTTGTGGGGATAGGAATCAGTTGGGTAACTTTTCAGAATTTGTGGTCATGGAAGCAAGTTTTTTAGCTACCTACCCCCGGTTTAGAATACCATGTGTTTCTCTTGCTCTTGCTCTTCCTCCTTTGTCCTTCTCTCTCCCTTTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTTGTTGAATTATAAGTTTAGTCTAGATTTTGATCTATTTGGTCTCTGAACTTTTAAAATATCTAATAAGTCTATGAGCTTTCAATTTTGTGTCTAATAAGTTCTTGACAAATTAAAAATTATTCTAACTATTAAACATATATTTAAGTTTTATATCTAATGGAATAATGAACTTTCAATTTTATGTCTGGTAGATCCGTAAGTTATTAGACTAAATTTGTATTTCTAAAAGTTCTAAGATCAAACAGAAACAAATTTCAAAGTTCAGGACTAAGAGGGCGTTTGAGGCACTAACTTGGTTATTATAGTCTATGGGCTATAATAGTTTGTAAGTTGTTATAGTCTGTGTTTGGGGTGCAGACTATTTTAGTCTAGGTAGGAAATAGTAAACATTGTAGCAAAGTGGGAAAGAAAGGATGTGTAGGAAGTAGTAAACATTGTAGCAAAAAATGACTTGAAATAGTAATATTGTAGTTAATTGTAAGTTATAATAGTTGAAAACACCAACTATTATAATTGGTGCTCCAAATGTGGAGTGGCTATAATAGCCCACTCTACCAACTTCAAGTTGGTGCCCCCAAACACGCCCTAGACGTGTAATTTAATGTCTTTTTTTTTCTCTTCTCGTCGTGTGTGTGTGCAAATGCACTTTGTCTCGCTATGGCTTAGTAGTTCGTTGTTTTTTAGTGAATGCCAGCTTTACAAAATCCTACACCGTAACTCAACCTTTTGTCGTCATTATAATATTCTTTAAGGGGGTGTTTGGAGTAAACAGTGGAATAGTGAAGAGTAAAGAGTTATGAAGTCTAGGGAGTTATGAACTCCTGGGAGCTTGTAAGGAGTTGATAAGATATAAAATTAATGGTTTTTAGTAGTGGGACTCACCTACTCATTGAGCCAAACAAGGAGTGGAGTTCACAACTCCTATTTTCGAACTCCCTACTCCACAATTCCTTAGGCCAAACACACCCTAAAAGATTGCAAAATGCTACTTAATTTATTTTATTTATTTATTTATTTTGGTTGGTTGTAACTTGTAATCCATTATGCAGTCTAAAAGATCAAAGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAGATCATTTGGTATAATCCTCCTCTTGTGCTAGTGTACGGATTGTAGCTTCAATATCAGCATTCAGCTAGCTTCTCCTTTTTCTTCCTTTGGATTTAAAATTCAGAGCCTTAGAACAAACTAAGATGGAGAATAATTATTTCTTTGTTATATGTAGTTGATGATAGAGATGATTGTGATTTAAAACGAGGTGTTACCTTTTTATTGTCATCATGTGTTAATCTTAGGATGTGTTTGGT

mRNA sequence

ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATCATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCTTTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTTGAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTCTCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGATCTAAAAGATCAAAGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAGATCATTTGGTATAATCCTCCTCTTGTGCTAGTGTACGGATTGTAGCTTCAATATCAGCATTCAGCTAGCTTCTCCTTTTTCTTCCTTTGGATTTAAAATTCAGAGCCTTAGAACAAACTAAGATGGAGAATAATTATTTCTTTGTTATATGTAGTTGATGATAGAGATGATTGTGATTTAAAACGAGGTGTTACCTTTTTATTGTCATCATGTGTTAATCTTAGGATGTGTTTGGT

Coding sequence (CDS)

ATGCCCGTAAACCTATTCTGTTTAGTTAAGACTCTGGATGCCAGTAAATGTTATGATTCTTCCTTTAAGGTTTACAAATGGATGATTTTCATTTTACTCCTAAAGTTATCATCCAGCATCTTATGTCCAACAATTAGCTCTAAAGTCTTATACCTAGAAATTATTGTTGTCACCATAATGCGAGATAAAATGCGGGAGAATGTGACAAAGTCACCCTTCTTTCAAGTTGTCTTTAATGAATTGATGGTTGGTGAATGTATCGAGCAGGTGGGAAGGATTTCGTTTTATGCAAAAGTTACATTCACTTGGGGCCTCCTTGAAATAGGCCTTGAAATCTTGGAATGTATGGGGATATTAGGATCAAGAAGCAGGAAGGTTCCAAAGCAGCAAGAGATCTTGAGGAAGGTTAAGTTTCTAGATAGGCTTGAAAAGGAGGCCTCTCTTGCAGAGGTTTTCGAAGATGAGCGAGCCTATCTAAAGGCAGAATTTGGAGAGTTTGTTACTAAAGGGGTGACAAGTTGGAGGCAAAGGGCCAGATCTAAAAGATCAAAGCGGAAACTGAGACAGCCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCGGTTAG

Protein sequence

MPVNLFCLVKTLDASKCYDSSFKVYKWMIFILLLKLSSSILCPTISSKVLYLEIIVVTIMRDKMRENVTKSPFFQVVFNELMVGECIEQVGRISFYAKVTFTWGLLEIGLEILECMGILGSRSRKVPKQQEILRKVKFLDRLEKEASLAEVFEDERAYLKAEFGEFVTKGVTSWRQRARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG
Homology
[Close]
BLAST of LsiUNG000800 vs. ExPASy TrEMBL
Match: A0A6P3Z338 (uncharacterized protein LOC107405347 OS=Ziziphus jujuba OX=326968 GN=LOC107408231 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-05
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 160 KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Sbjct: 115 KSRFRTMNDGNIRRWKEGKRHNAHLKSKKSKRRLRQPAIVPLAYAKVMKKLNFCG 169

[Close]
BLAST of LsiUNG000800 vs. ExPASy TrEMBL
Match: A0A5N6R5N6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012555 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-05
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 160 KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Sbjct: 116 KSRFRTMNDGNIRRWKEGKRHNAHLKSKKSKRRLRQPAIVPLAYAKVMKKLNFCG 170

[Close]
BLAST of LsiUNG000800 vs. ExPASy TrEMBL
Match: A0A067F5R1 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028473mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 179 RSKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           +SK+SKR+LRQPA+VPLAYAKVMKKLNFCG
Sbjct: 179 KSKKSKRRLRQPALVPLAYAKVMKKLNFCG 208

[Close]
BLAST of LsiUNG000800 vs. ExPASy TrEMBL
Match: V4T3A6 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002495mg PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.3e-05
Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 0 

Query: 179 RSKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           +SK+SKR+LRQPA+VPLAYAKVMKKLNFCG
Sbjct: 179 KSKKSKRRLRQPALVPLAYAKVMKKLNFCG 208

[Close]
BLAST of LsiUNG000800 vs. ExPASy TrEMBL
Match: A0A142CD00 (Formin-like protein 20 OS=Catalpa bungei OX=265496 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 0 

Query: 178 ARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           ++SK+SKR+LRQP IVPLAYAKVMKKLNFCG
Sbjct: 144 SKSKKSKRRLRQPGIVPLAYAKVMKKLNFCG 174

[Close]
BLAST of LsiUNG000800 vs. NCBI nr
Match: XP_038887770.1 (uncharacterized protein LOC120077803 [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-05
Identity = 28/31 (90.32%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 178 ARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           ++SKRSKR+LRQPAIVPLAYAKVMKKLNFCG
Sbjct: 138 SKSKRSKRRLRQPAIVPLAYAKVMKKLNFCG 168

[Close]
BLAST of LsiUNG000800 vs. NCBI nr
Match: XP_038708453.1 (uncharacterized protein LOC120003513 [Tripterygium wilfordii])

HSP 1 Score: 58.5 bits (140), Expect = 7.7e-05
Identity = 48/164 (29.27%), Postives = 73/164 (44.51%), Query Frame = 0 

Query: 63  KMRENVTKSPFFQVVFNELMVGECIEQVGRISFYAKVTFTWGLLEIGL-----EILECMG 122
           K++   T S  + V  +   +  C  Q+G     A  T +W L ++            + 
Sbjct: 12  KLQSPETFSSLYSVSSSRRFLHHCSPQLGHSPHLAS-TSSWSLRQVLYPSTVNHQFPSLA 71

Query: 123 ILGSRSRKVPKQQEILRKVKFLDRLEKEASLAEVFEDER-------AYLKAEFGEFVTKG 182
           +L  RS  +P     +R V   +R +K   +  V    +       +  K  F       
Sbjct: 72  VLPLRSSPLPLSLVHVRYVSSRERRKKRKPMTPVTSKLKKTKMKSYSSYKLRFRTMNDGK 131

Query: 183 VTSWRQ------RARSKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           +  W++        +SK+SKR+LRQPAIVP A+AKVMKKLNFCG
Sbjct: 132 IRRWKEGKRHNAHVKSKKSKRRLRQPAIVPAAFAKVMKKLNFCG 174

[Close]
BLAST of LsiUNG000800 vs. NCBI nr
Match: KAE8055733.1 (hypothetical protein FH972_012555 [Carpinus fangiana])

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-04
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 160 KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Sbjct: 116 KSRFRTMNDGNIRRWKEGKRHNAHLKSKKSKRRLRQPAIVPLAYAKVMKKLNFCG 170

[Close]
BLAST of LsiUNG000800 vs. NCBI nr
Match: XP_015867872.1 (uncharacterized protein LOC107405347 [Ziziphus jujuba] >XP_015871095.1 uncharacterized protein LOC107408231 [Ziziphus jujuba] >XP_015901328.1 uncharacterized protein LOC107434376 [Ziziphus jujuba])

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-04
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 160 KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           K+ F       +  W++  R      SK+SKR+LRQPAIVPLAYAKVMKKLNFCG
Sbjct: 115 KSRFRTMNDGNIRRWKEGKRHNAHLKSKKSKRRLRQPAIVPLAYAKVMKKLNFCG 169

[Close]
BLAST of LsiUNG000800 vs. NCBI nr
Match: XP_042952780.1 (uncharacterized protein LOC122289658 [Carya illinoinensis] >KAG6633742.1 hypothetical protein CIPAW_12G070200 [Carya illinoinensis])

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-04
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 160 KAEFGEFVTKGVTSWRQRAR------SKRSKRKLRQPAIVPLAYAKVMKKLNFCG 209
           K+ F       +  W++  R      SK+SKR+LRQPAIVP+AYAKVMKKLNFCG
Sbjct: 116 KSRFRTMSDGNIRRWKEGKRHNAHLKSKKSKRRLRQPAIVPVAYAKVMKKLNFCG 170

[Close]
BLAST of LsiUNG000800 vs. TAIR 10
Match: AT5G45590.1 (Ribosomal protein L35 )

HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 179 RSKRSKRKLRQPAIVPLAYAKVMKKLNFC 208
           +SK+SKR+LRQP +VP AYAKVMKKLNFC
Sbjct: 144 KSKKSKRRLRQPGLVPPAYAKVMKKLNFC 172

The following BLAST results are available for this feature:
BLAST of LsiUNG000800 vs.
Match NameE-valueIdentityDescription
BLAST of LsiUNG000800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6P3Z3384.9e-0556.36uncharacterized protein LOC107405347 OS=Ziziphus jujuba OX=326968 GN=LOC10740823... [more]
A0A5N6R5N64.9e-0556.36Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_012555 PE=4 SV=1[more]
A0A067F5R18.3e-0586.67Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g028473mg PE=4 SV=1[more]
V4T3A68.3e-0586.67Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10002495mg PE=4 ... [more]
A0A142CD001.1e-0483.87Formin-like protein 20 OS=Catalpa bungei OX=265496 PE=2 SV=1[more]
BLAST of LsiUNG000800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887770.13.5e-0590.32uncharacterized protein LOC120077803 [Benincasa hispida][more]
XP_038708453.17.7e-0529.27uncharacterized protein LOC120003513 [Tripterygium wilfordii][more]
KAE8055733.11.0e-0456.36hypothetical protein FH972_012555 [Carpinus fangiana][more]
XP_015867872.11.0e-0456.36uncharacterized protein LOC107405347 [Ziziphus jujuba] >XP_015871095.1 uncharact... [more]
XP_042952780.11.7e-0454.55uncharacterized protein LOC122289658 [Carya illinoinensis] >KAG6633742.1 hypothe... [more]
BLAST of LsiUNG000800 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G45590.11.5e-0679.31Ribosomal protein L35 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
LsiUNG000800.1LsiUNG000800.1mRNA