LsiUNG000510 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	LsiUNG000510
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Auxin responsive SAUR protein
Location	chr00: 834863 .. 835267 (+)
RNA-Seq Expression	LsiUNG000510
Synteny	LsiUNG000510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGCTTGGTCCTCCCTTGCTACGTCATGAAGAGACGACGGCCGAGATCAAGCCGATCACGTCTTGGCTACCACCGTCTCAACAAATCCGATCTCGGCCGCAACAGTGGAGCCGCGGAGAGTAATCTAGTGAAGGTTGTGGCGGGAAAAGAGAGGAGAGAATTCTTAGTAGACCCTTTTGTGTTGGAAGAAACTCCGTTTCGGATTTTGATCGGAAAAGGAGGAGATGACGATGAAGATGAAGATAAAGAAGAAGAAGATGGTAAAAGGAAAAGGGTTATTTTTGTTGATGTTGATGCTATTCTGTTCGAGCACTTGCTATGGCTCATGTACAATGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

mRNA sequence

ATGGGTTGCTTGGTCCTCCCTTGCTACGTCATGAAGAGACGACGGCCGAGATCAAGCCGATCACGTCTTGGCTACCACCGTCTCAACAAATCCGATCTCGGCCGCAACAGTGGAGCCGCGGAGAGTAATCTAGTGAAGGTTGTGGCGGGAAAAGAGAGGAGAGAATTCTTAGTAGACCCTTTTGTGTTGGAAGAAACTCCGTTTCGGATTTTGATCGGAAAAGGAGGAGATGACGATGAAGATGAAGATAAAGAAGAAGAAGATGGTAAAAGGAAAAGGGTTATTTTTGTTGATGTTGATGCTATTCTGTTCGAGCACTTGCTATGGCTCATGTACAATGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Coding sequence (CDS)

ATGGGTTGCTTGGTCCTCCCTTGCTACGTCATGAAGAGACGACGGCCGAGATCAAGCCGATCACGTCTTGGCTACCACCGTCTCAACAAATCCGATCTCGGCCGCAACAGTGGAGCCGCGGAGAGTAATCTAGTGAAGGTTGTGGCGGGAAAAGAGAGGAGAGAATTCTTAGTAGACCCTTTTGTGTTGGAAGAAACTCCGTTTCGGATTTTGATCGGAAAAGGAGGAGATGACGATGAAGATGAAGATAAAGAAGAAGAAGATGGTAAAAGGAAAAGGGTTATTTTTGTTGATGTTGATGCTATTCTGTTCGAGCACTTGCTATGGCTCATGTACAATGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Protein sequence

MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRNSGAAESNLVKVVAGKERREFLVDPFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNVEEILDFYAQDF

Homology

[Close]

BLAST of LsiUNG000510 vs. ExPASy TrEMBL
Match: A0A5D3E5S1 (Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004380 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.4e-55
Identity = 113/135 (83.70%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRN-SGAAESNLVKVVAGKERREFLVD 60
           MGCLVLPCYVMKRRR RS+R  LGYHRL+KS+ GRN S  AES+LVKVVAGKERREFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEE PFR LI KGGD D+DED + + GK+KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 120

Query: 121 KLNVEEILDFYAQDF 135
           KLNVEEILDFYAQDF
Sbjct: 121 KLNVEEILDFYAQDF 135

[Close]

BLAST of LsiUNG000510 vs. ExPASy TrEMBL
Match: A0A1S3CQ48 (uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.4e-55
Identity = 113/135 (83.70%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRN-SGAAESNLVKVVAGKERREFLVD 60
           MGCLVLPCYVMKRRR RS+R  LGYHRL+KS+ GRN S  AES+LVKVVAGKERREFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEE PFR LI KGGD D+DED + + GK+KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 144

Query: 121 KLNVEEILDFYAQDF 135
           KLNVEEILDFYAQDF
Sbjct: 145 KLNVEEILDFYAQDF 159

[Close]

BLAST of LsiUNG000510 vs. ExPASy TrEMBL
Match: A0A0A0LK59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.3e-54
Identity = 117/138 (84.78%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MGCLVLPCYVMK-RRRPRSSRSRLGYHRLNKSDLGRN---SGAAESNLVKVVAGKERREF 60
           MGCLVLPCYVMK RRR RS++  LGYHRLNKS+ GRN      AES+LVKVVAGKERREF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCS 120
           LVDPFVLEE PFRILI KGGDDDEDED    DGKRKRVIFVDVDAILFEHLLWLMYNDCS
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDED---GDGKRKRVIFVDVDAILFEHLLWLMYNDCS 120

Query: 121 SLFKLNVEEILDFYAQDF 135
           SLFKLNVEEILDFYAQDF
Sbjct: 121 SLFKLNVEEILDFYAQDF 135

[Close]

BLAST of LsiUNG000510 vs. ExPASy TrEMBL
Match: A0A6J1EYP5 (uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC111437423 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.8e-32
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MGCLV--LPCYVMKRRRPRSSRSRLGYHRLNKSDLGRNSGAAESNLVKVVAGKERREFLV 60
           M CLV  LPCYVMKRRR R++  RL Y RLNKS+          +LV+VV GKER EFLV
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTA-PRLPYRRLNKSE----------SLVRVVVGKERTEFLV 60

Query: 61  DPFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKR---VIFVDVDAILFEHLLWLMYNDC 120
           DPFVLEE PFR+L+ KG         EE+ GKR+R   +IFVDVDAILFEH LWL+YND 
Sbjct: 61  DPFVLEENPFRVLMEKG-------RFEEKQGKRRREEHIIFVDVDAILFEHFLWLIYNDS 120

Query: 121 SSLFKLNVEEILDFYAQDF 135
           SSL  LN++EIL FY+QDF
Sbjct: 121 SSLLTLNLDEILHFYSQDF 121

[Close]

BLAST of LsiUNG000510 vs. ExPASy TrEMBL
Match: A0A7N2N146 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.4e-31
Identity = 79/135 (58.52%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRNSGAAES-NLVKVVAGKERREFLVD 60
           M CLVLP  ++KR   R + SRLGY  L K       G  ES + V VV GKE+REFLVD
Sbjct: 1   MDCLVLPVTILKR---RCTGSRLGYRPLTK------DGFEESGHQVTVVVGKEKREFLVD 60

Query: 61  PFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEE PFR+LI     +D++++   +   +KRVIFVDVD+ILFEH+LWLMYNDCSSLF
Sbjct: 61  PFVLEENPFRVLIEMMKKNDQEKNFVVDHRSKKRVIFVDVDSILFEHMLWLMYNDCSSLF 120

Query: 121 KLNVEEILDFYAQDF 135
           KLN++EI+DFY+QD+
Sbjct: 121 KLNLKEIIDFYSQDY 126

[Close]

BLAST of LsiUNG000510 vs. NCBI nr
Match: XP_038888374.1 (uncharacterized protein LOC120078224 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 5.3e-55
Identity = 116/134 (86.57%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRNSGAAESNLVKVVAGKERREFLVDP 60
           M CLVLPCYVMKRRR RS+R RLGYHRLNKS++GR  G AES+LVKVVAGKE+REFLVDP
Sbjct: 1   MDCLVLPCYVMKRRRRRSTRPRLGYHRLNKSNVGRLDG-AESSLVKVVAGKEKREFLVDP 60

Query: 61  FVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLFK 120
           FVLEE PFRILI KGGDD+ED   EEEDGKRKRVIFVDVD+ILFEHLLWLMYNDCSSLFK
Sbjct: 61  FVLEENPFRILIEKGGDDNED---EEEDGKRKRVIFVDVDSILFEHLLWLMYNDCSSLFK 120

Query: 121 LNVEEILDFYAQDF 135
           LNVEEILDFYAQDF
Sbjct: 121 LNVEEILDFYAQDF 130

[Close]

BLAST of LsiUNG000510 vs. NCBI nr
Match: XP_008465964.1 (PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 113/135 (83.70%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRN-SGAAESNLVKVVAGKERREFLVD 60
           MGCLVLPCYVMKRRR RS+R  LGYHRL+KS+ GRN S  AES+LVKVVAGKERREFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEE PFR LI KGGD D+DED + + GK+KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 144

Query: 121 KLNVEEILDFYAQDF 135
           KLNVEEILDFYAQDF
Sbjct: 145 KLNVEEILDFYAQDF 159

[Close]

BLAST of LsiUNG000510 vs. NCBI nr
Match: KAA0038583.1 (Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin responsive SAUR protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-54
Identity = 113/135 (83.70%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRN-SGAAESNLVKVVAGKERREFLVD 60
           MGCLVLPCYVMKRRR RS+R  LGYHRL+KS+ GRN S  AES+LVKVVAGKERREFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEE PFR LI KGGD D+DED + + GK+KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 120

Query: 121 KLNVEEILDFYAQDF 135
           KLNVEEILDFYAQDF
Sbjct: 121 KLNVEEILDFYAQDF 135

[Close]

BLAST of LsiUNG000510 vs. NCBI nr
Match: XP_011652654.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical protein Csa_001277 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 117/138 (84.78%), Postives = 121/138 (87.68%), Query Frame = 0


Query: 1   MGCLVLPCYVMK-RRRPRSSRSRLGYHRLNKSDLGRN---SGAAESNLVKVVAGKERREF 60
           MGCLVLPCYVMK RRR RS++  LGYHRLNKS+ GRN      AES+LVKVVAGKERREF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVDVDAILFEHLLWLMYNDCS 120
           LVDPFVLEE PFRILI KGGDDDEDED    DGKRKRVIFVDVDAILFEHLLWLMYNDCS
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDED---GDGKRKRVIFVDVDAILFEHLLWLMYNDCS 120

Query: 121 SLFKLNVEEILDFYAQDF 135
           SLFKLNVEEILDFYAQDF
Sbjct: 121 SLFKLNVEEILDFYAQDF 135

[Close]

BLAST of LsiUNG000510 vs. NCBI nr
Match: XP_022931160.1 (uncharacterized protein LOC111437423 [Cucurbita moschata])

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-31
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MGCLV--LPCYVMKRRRPRSSRSRLGYHRLNKSDLGRNSGAAESNLVKVVAGKERREFLV 60
           M CLV  LPCYVMKRRR R++  RL Y RLNKS+          +LV+VV GKER EFLV
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTA-PRLPYRRLNKSE----------SLVRVVVGKERTEFLV 60

Query: 61  DPFVLEETPFRILIGKGGDDDEDEDKEEEDGKRKR---VIFVDVDAILFEHLLWLMYNDC 120
           DPFVLEE PFR+L+ KG         EE+ GKR+R   +IFVDVDAILFEH LWL+YND 
Sbjct: 61  DPFVLEENPFRVLMEKG-------RFEEKQGKRRREEHIIFVDVDAILFEHFLWLIYNDS 120

Query: 121 SSLFKLNVEEILDFYAQDF 135
           SSL  LN++EIL FY+QDF
Sbjct: 121 SSLLTLNLDEILHFYSQDF 121

[Close]

BLAST of LsiUNG000510 vs. TAIR 10
Match: AT2G35290.1 (unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-21
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 1   MGCLVLPCYVMKRRRPRSSRSRLGYHRLNKSDLGRNSGAAESNLVKVVAGKERREFLVDP 60
           MGCL+ P  VMK RR  S+ SR    R    +L  N    E  +++VV GKE++EF+V+P
Sbjct: 1   MGCLISP--VMKLRRLSSADSR----RFAYRNLAEN---MEDPVIRVVVGKEKKEFMVEP 60

Query: 61  FVLEETPFRILIGKGGDDDEDEDKEEEDGKRKRVIFVD-VDAILFEHLLWLMYNDCSSLF 120
           +VLEE PFR+LIG     D  +++    G   RV+++D VD+ILFEHLLWL+ ND S+  
Sbjct: 61  YVLEEYPFRVLIGSA--KDRAKNRLNRTG---RVVWLDHVDSILFEHLLWLLRNDASTFS 120

Query: 121 KLNVEEILDFYAQD 134
            L+V EI++FYAQD
Sbjct: 121 DLDVLEIIEFYAQD 120

[Close]

BLAST of LsiUNG000510 vs. TAIR 10
Match: AT1G72430.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 41.2 bits (95), Expect = 7.7e-04
Identity = 28/106 (26.42%), Postives = 52/106 (49.06%), Query Frame = 0


Query: 25  YHRLNKSDLGRNSGAAESNLVKVVAGKERREFLVDPFVLEETPFRILIGKGGDDDEDEDK 84
           +H    S    +  + ++NL  V  G+ RR +++ P ++    F+ L+ +      ++D+
Sbjct: 24  HHHSTSSAAVSDELSEDNNLHVVYVGQTRRPYMLRPDIISHPLFQELVDRSSSRSIEQDR 83

Query: 85  EEEDGKRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNVEEILDFY 131
           E         I V  + +LFEHLLW++    S     +VEE+ +FY
Sbjct: 84  E---------IVVACEVVLFEHLLWMLK---SGQEGGSVEELAEFY 117

The following BLAST results are available for this feature:

BLAST of LsiUNG000510 vs.


Match Name	E-value	Identity	Description

BLAST of LsiUNG000510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5S1	7.4e-55	83.70	Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CQ48	7.4e-55	83.70	uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=...	[more]
A0A0A0LK59	6.3e-54	84.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1	[more]
A0A6J1EYP5	8.8e-32	61.15	uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC1114374...	[more]
A0A7N2N146	4.4e-31	58.52	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of LsiUNG000510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888374.1	5.3e-55	86.57	uncharacterized protein LOC120078224 [Benincasa hispida]	[more]
XP_008465964.1	1.5e-54	83.70	PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo]	[more]
KAA0038583.1	1.5e-54	83.70	Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin respo...	[more]
XP_011652654.1	1.3e-53	84.78	auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical prote...	[more]
XP_022931160.1	1.8e-31	61.15	uncharacterized protein LOC111437423 [Cucurbita moschata]	[more]

BLAST of LsiUNG000510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35290.1	1.1e-21	47.76	unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bac...	[more]
AT1G72430.1	7.7e-04	26.42	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35296	EXPRESSED PROTEIN	coord: 1..133
None	No IPR available	PANTHER	PTHR35296:SF3	EXPRESSED PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG000510.1	LsiUNG000510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane