LsiUNG000260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	LsiUNG000260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	TPR_REGION domain-containing protein
Location	chr00: 456578 .. 457885 (-)
RNA-Seq Expression	LsiUNG000260
Synteny	LsiUNG000260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGCCAAAAGAAAGAAAGAAAAAAACTCTGCCATTTCATAACCTTCGCAACTTTGCAGCTATGAAATCCGCTCTCCTCCGAACCGGATCCGTTCCCGTCATCTCGCCGGCCGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCATCTTCATCTCCGAAAATATCTCTACATTTTGAAATCAATCATCGCAGAGGAAATAATTCCAGTAGTATCCGAAGAGCAGCATCGGAGAGCGACATCACACGATCGCTGCACGAGGTTTCCAATCCATACGATCAATCCAGTGGTGTCAGATCTCGATCTCGGTCCTTTCCTTCCGGAATTCCAGAGGAGGAGTTTCTAAACGAGGATGAATTCGACAGTAATTCCATGGAGGATGGCGCTAAGTTTGTTGCAGATACGTTTTCGAACGGAATCAATGACCGTAAGATCAGAGCGTACTACGAAGAGTTGCTGAAATTGAACCCTAGCGACGCTCTGTTACTAAGAAACTACGGAAAATTCTTACACGAGGTAATTGAAAACTAGAATTATCAAATTGAAAGTGTATTTGGATCTGAAATCATGAAACGTAACCGAATCTTAGAGTTGAATTTGTTGAAATTGTAAAGGTGTTGAAAGATACAATACGAGCGGAAGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTACTGGCTCTATACGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTCGATCGGGCCGTCTATGCCTCTCCTAACGACTGGTAATTTCGGATCTGTTGATTTAGCAATTAAGCCCTAATTTTATGAACCGGAAGGTTTCTGAATGTTATGAATTTTGTTTTGTGAAGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGAGGCGGCTCCACCGCCGGCCATGGTAGCTGCGTGTTAATGTCGATGAAGAGGGAGGGTTTTTGGGAAATTAGGAGAGGAAGAACTAACAAAGGAAGTGGGCATGTGATTTGTGCATGGGCCATTTCAAGAGGGAATAAGATTCAGTATGGGGGCTGCTGTCATTTTTCTATTTTATTATATTTAAACCTCTTTTACATTAATTTTTTTTTTCTCTTTTGTAAAAGTGTAAAATTATAATTTTTTGGGACAGTTTAATCCATGTTTACTTAACATTCCATGTCTAATGTAATGCAGTCCGAATAATAAGAATAACTCAGATTTATTTATTTATTATTATTATTA

mRNA sequence

AATAGCCAAAAGAAAGAAAGAAAAAAACTCTGCCATTTCATAACCTTCGCAACTTTGCAGCTATGAAATCCGCTCTCCTCCGAACCGGATCCGTTCCCGTCATCTCGCCGGCCGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCATCTTCATCTCCGAAAATATCTCTACATTTTGAAATCAATCATCGCAGAGGAAATAATTCCAGTAGTATCCGAAGAGCAGCATCGGAGAGCGACATCACACGATCGCTGCACGAGGTTTCCAATCCATACGATCAATCCAGTGGTGTCAGATCTCGATCTCGGTCCTTTCCTTCCGGAATTCCAGAGGAGGAGTTTCTAAACGAGGATGAATTCGACAGTAATTCCATGGAGGATGGCGCTAAGTTTGTTGCAGATACGTTTTCGAACGGAATCAATGACCGTAAGATCAGAGCGTACTACGAAGAGTTGCTGAAATTGAACCCTAGCGACGCTCTGTTACTAAGAAACTACGGAAAATTCTTACACGAGGTGTTGAAAGATACAATACGAGCGGAAGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTACTGGCTCTATACGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTCGATCGGGCCGTCTATGCCTCTCCTAACGACTGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGAGGCGGCTCCACCGCCGGCCATGGTAGCTGCGTGTTAATGTCGATGAAGAGGGAGGGTTTTTGGGAAATTAGGAGAGGAAGAACTAACAAAGGAAGTGGGCATGTGATTTGTGCATGGGCCATTTCAAGAGGGAATAAGATTCAGTATGGGGGCTGCTGTCATTTTTCTATTTTATTATATTTAAACCTCTTTTACATTAATTTTTTTTTTCTCTTTTGTAAAAGTGTAAAATTATAATTTTTTGGGACAGTTTAATCCATGTTTACTTAACATTCCATGTCTAATGTAATGCAGTCCGAATAATAAGAATAACTCAGATTTATTTATTTATTATTATTATTA

Coding sequence (CDS)

ATGAAATCCGCTCTCCTCCGAACCGGATCCGTTCCCGTCATCTCGCCGGCCGCCGCCGCTTCTTCTTCCTTCTCCAACAACAAACCGTTGTATGGAGTTTTCTCCTGCCACAAAAGTTCATCTTCATCTCCGAAAATATCTCTACATTTTGAAATCAATCATCGCAGAGGAAATAATTCCAGTAGTATCCGAAGAGCAGCATCGGAGAGCGACATCACACGATCGCTGCACGAGGTTTCCAATCCATACGATCAATCCAGTGGTGTCAGATCTCGATCTCGGTCCTTTCCTTCCGGAATTCCAGAGGAGGAGTTTCTAAACGAGGATGAATTCGACAGTAATTCCATGGAGGATGGCGCTAAGTTTGTTGCAGATACGTTTTCGAACGGAATCAATGACCGTAAGATCAGAGCGTACTACGAAGAGTTGCTGAAATTGAACCCTAGCGACGCTCTGTTACTAAGAAACTACGGAAAATTCTTACACGAGGTGTTGAAAGATACAATACGAGCGGAAGAATGCTACAGCAGAGCAATATTAGCGAGTCCAACAGACGGTGAATTACTGGCTCTATACGGAAAATTAGTATGGGATACTCAAAGAGATAAGCGAAGAGCTCAATATTACTTCGATCGGGCCGTCTATGCCTCTCCTAACGACTGTTTGGTGATAGGACATTACGCTCATTTCTTGTGGCAAGTTGAAGACGATGAGGCGGAGGCGGCTCCACCGCCGGCCATGGTAGCTGCGTGTTAA

Protein sequence

MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNSSSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSNSMEDGAKFVADTFSNGINDRKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAEAAPPPAMVAAC

Homology

[Close]

BLAST of LsiUNG000260 vs. ExPASy TrEMBL
Match: A0A6J1EX26 (uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC111437316 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.2e-95
Identity = 195/269 (72.49%), Postives = 222/269 (82.53%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           MKSALLRT S+PVI P+  ASSSFSN +PL+GVF+ HKSS SSPKISLHFE+N+ RG NS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGV--RSRSRSFPSGIPEEEFLNEDEFDSNSME- 120
           S IRRA+SESDI+RSLHEVSNPYDQ  GV  RSR+RS  S IPEEEFLN+DEFDS+SME 
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 ------------DGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEV 180
                       DGA+F  DTF +G NDR KI AYYEELLKLNP+DALLLRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 LKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVI 240
            KD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLVI
Sbjct: 181 EKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVI 240

Query: 241 GHYAHFLWQVEDDEAEAAP---PPAMVAA 251
           G+YA+FLWQ+EDDE E A    P AMVAA
Sbjct: 241 GYYAYFLWQIEDDEEEEAAEVWPAAMVAA 269

[Close]

BLAST of LsiUNG000260 vs. ExPASy TrEMBL
Match: A0A6J1HIV3 (uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC111463957 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 2.8e-95
Identity = 197/268 (73.51%), Postives = 213/268 (79.48%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           M+SAL+RT SVPV+S A AASSSFSN KPLYG  S   SS SSPKISLHFEINHRRG N 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSNSME--- 120
           S IRRAASESDI+RSLHEVS+PYDQ  G RSR  S PS IPE+EFLN+DEF  +S     
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 ---------DGAKFVADTFSNGIND-RKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKD 180
                    DG  FVAD FS+G ++  KIRAYYEE+LK NPSDAL+LRNYGKFLHEV KD
Sbjct: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKD 180

Query: 181 TIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHY 240
           + RAEECYSRAILASP DGELLALYGKLVWDTQRDKRRAQYYFDRAV ASPNDCLVIG+Y
Sbjct: 181 SKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY 240

Query: 241 AHFLWQVEDDEAEA-----APPPAMVAA 251
           AHFLW VEDDE EA     AP PA+VAA
Sbjct: 241 AHFLWLVEDDEEEATAVAPAPAPALVAA 268

[Close]

BLAST of LsiUNG000260 vs. ExPASy TrEMBL
Match: A0A6J1HRN2 (uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 8.0e-95
Identity = 198/269 (73.61%), Postives = 214/269 (79.55%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           M+SAL+RT SVPV+S A AASSSFSN KPLYG  S   SS SSPKISLHFEINHRRG N 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSNSME--- 120
           S IRRAASESDI+RSLHEVS+PYDQ  G RSR  S PSGIPEEEFLN+DEF  +S+    
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSGIPEEEFLNQDEFHRDSVADTE 120

Query: 121 ---------DGAKFVA-DTFSNGIND-RKIRAYYEELLKLNPSDALLLRNYGKFLHEVLK 180
                    DG  FVA D F++G ++  KIRAYYEE+LK NPSD L+LRNYGKFLHEV K
Sbjct: 121 FLNSGIVSGDGGDFVATDKFTDGSSESSKIRAYYEEMLKSNPSDPLILRNYGKFLHEVEK 180

Query: 181 DTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGH 240
           DT RAEECYSRAILASP DGELLALYGKLVWDTQRDKRRAQYYFDRAV ASPNDCLVIG+
Sbjct: 181 DTKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGY 240

Query: 241 YAHFLWQVEDDEAEA-----APPPAMVAA 251
           YAHFLW VEDDE EA     AP PA+VAA
Sbjct: 241 YAHFLWLVEDDEEEATAVALAPAPALVAA 269

[Close]

BLAST of LsiUNG000260 vs. ExPASy TrEMBL
Match: A0A6J1K5B2 (uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 2.6e-93
Identity = 192/269 (71.38%), Postives = 219/269 (81.41%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           MKSAL RT S+PVISP+  ASSSFSN +PL+GVF+ HKSS SSPKISL FE+N+ RG NS
Sbjct: 1   MKSALFRTVSIPVISPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLLFEMNNPRGRNS 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGV--RSRSRSFPSGIPEEEFLNEDEFDSNSME- 120
           S IRR +SESDI+RSLHEVSNPYDQ  GV  RSR+RS  S IPEEEFLN+DEFDS+SME 
Sbjct: 61  SGIRRVSSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEE 120

Query: 121 ------------DGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEV 180
                       DGA+F  DTF +G NDR KI AYYEELLKLNP+DALLLRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 LKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVI 240
            KD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLVI
Sbjct: 181 EKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVI 240

Query: 241 GHYAHFLWQVEDDEAEAAP---PPAMVAA 251
           G YA+FLWQ+EDDE + A    P AMVAA
Sbjct: 241 GCYAYFLWQIEDDEEQEAAEVWPAAMVAA 269

[Close]

BLAST of LsiUNG000260 vs. ExPASy TrEMBL
Match: A0A5D3E5U4 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004600 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.3e-89
Identity = 186/257 (72.37%), Postives = 209/257 (81.32%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           MKSALLRTGSVP++SP   AS   +N +PLYGV SCH SS+SSP+ISLH        NNS
Sbjct: 1   MKSALLRTGSVPLLSPTTTAS---NNKQPLYGVLSCHNSSASSPRISLHC-----TRNNS 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGVRSR--SRSFPSGIPEEEFLNE-DEFDSNSME 120
           + IRRAASESDI RSLHEVSN  DQ SG+ SR  SRSFPS IPEEEF++E D+FDS+SME
Sbjct: 61  NRIRRAASESDIVRSLHEVSNTSDQFSGLASRSLSRSFPSKIPEEEFIDEDDQFDSDSME 120

Query: 121 DGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYS 180
           +  +++   +  G+NDR KI AYYE +LKLNPSDALLLRNYGKFLHEV+ DT RAEECYS
Sbjct: 121 EDKEYL--NYRVGVNDRSKIGAYYEHMLKLNPSDALLLRNYGKFLHEVVNDTKRAEECYS 180

Query: 181 RAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVED 240
           RAILASPTDGELLALYGKLVWDT+RDK+RAQYYFDRAVYASPNDCLV GHYAHF+WQVED
Sbjct: 181 RAILASPTDGELLALYGKLVWDTERDKQRAQYYFDRAVYASPNDCLVTGHYAHFMWQVED 240

Query: 241 DEAEAA--PPPAMVAAC 252
           DEA  A   P  MV AC
Sbjct: 241 DEAALAEDSPAGMVTAC 247

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: XP_038888361.1 (uncharacterized protein LOC120078207 [Benincasa hispida])

HSP 1 Score: 419.5 bits (1077), Expect = 2.1e-113
Identity = 224/262 (85.50%), Postives = 235/262 (89.69%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           MKSALLRTGSVPV+SP AAAS SFSNNKPLYGVFSC+KSS SSPKISLHFEINHRRG NS
Sbjct: 1   MKSALLRTGSVPVLSP-AAASFSFSNNKPLYGVFSCYKSSVSSPKISLHFEINHRRGKNS 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGV----RSRSRSFPSGIPEEEFLNEDEFDSNSM 120
           S IRRAASESDIT+SLHEV NP+DQSSGV    RSRSRSFPSGIPEEE LNEDE D +SM
Sbjct: 61  SRIRRAASESDITQSLHEVLNPHDQSSGVRSRSRSRSRSFPSGIPEEELLNEDESDGDSM 120

Query: 121 EDGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECY 180
           +DG  FV+DTFSNG NDR KI AYYEELLKLNPSDALLLRNYGKFLHEV+KDTIRAEECY
Sbjct: 121 KDGVDFVSDTFSNGSNDRSKIGAYYEELLKLNPSDALLLRNYGKFLHEVVKDTIRAEECY 180

Query: 181 SRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVE 240
           SRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASP+DCLVIGHYAHFLWQVE
Sbjct: 181 SRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPSDCLVIGHYAHFLWQVE 240

Query: 241 DDEAEA-------APPPAMVAA 251
           DDEA A       APP A+V+A
Sbjct: 241 DDEAAAAAAAAAEAPPAAVVSA 261

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: KAG6571653.1 (hypothetical protein SDJN03_28381, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011382.1 hypothetical protein SDJN02_26287 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.8 bits (922), Expect = 2.0e-95
Identity = 198/268 (73.88%), Postives = 213/268 (79.48%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           M+SAL+RT SVPV+S A AASSSFSN KPLYG  S   SS SSPKISLHFEINHRRG N 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSNSME--- 120
           S IRRAASESDITRSLHEVS+PYDQ  G RSR  S PS IPE+EFLN+DEF  +S     
Sbjct: 61  SGIRRAASESDITRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 ---------DGAKFVADTFSNGIND-RKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKD 180
                    DG  FVAD FS+G ++  KIRAYYEE+LK NPSDAL+LRNYGKFLHEV KD
Sbjct: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKD 180

Query: 181 TIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHY 240
           + RAEECYSRAILASP DGELLALYGKLVWDTQRDKRRAQYYFDRAV ASPNDCLVIG+Y
Sbjct: 181 SKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY 240

Query: 241 AHFLWQVEDDEAEA-----APPPAMVAA 251
           AHFLW VEDDE EA     AP PA+VAA
Sbjct: 241 AHFLWLVEDDEEEATAVAPAPAPALVAA 268

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: XP_022930988.1 (uncharacterized protein LOC111437316 [Cucurbita moschata] >KAG7036203.1 hypothetical protein SDJN02_03004 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 359.4 bits (921), Expect = 2.6e-95
Identity = 195/269 (72.49%), Postives = 222/269 (82.53%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           MKSALLRT S+PVI P+  ASSSFSN +PL+GVF+ HKSS SSPKISLHFE+N+ RG NS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGV--RSRSRSFPSGIPEEEFLNEDEFDSNSME- 120
           S IRRA+SESDI+RSLHEVSNPYDQ  GV  RSR+RS  S IPEEEFLN+DEFDS+SME 
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMED 120

Query: 121 ------------DGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEV 180
                       DGA+F  DTF +G NDR KI AYYEELLKLNP+DALLLRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 LKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVI 240
            KD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLVI
Sbjct: 181 EKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVI 240

Query: 241 GHYAHFLWQVEDDEAEAAP---PPAMVAA 251
           G+YA+FLWQ+EDDE E A    P AMVAA
Sbjct: 241 GYYAYFLWQIEDDEEEEAAEVWPAAMVAA 269

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: XP_022963763.1 (uncharacterized protein LOC111463957 [Cucurbita moschata])

HSP 1 Score: 358.2 bits (918), Expect = 5.7e-95
Identity = 197/268 (73.51%), Postives = 213/268 (79.48%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           M+SAL+RT SVPV+S A AASSSFSN KPLYG  S   SS SSPKISLHFEINHRRG N 
Sbjct: 1   MESALIRTVSVPVLSSAVAASSSFSNYKPLYGALSGQNSSISSPKISLHFEINHRRGKNW 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDEFDSNSME--- 120
           S IRRAASESDI+RSLHEVS+PYDQ  G RSR  S PS IPE+EFLN+DEF  +S     
Sbjct: 61  SGIRRAASESDISRSLHEVSSPYDQFGGFRSRYWSVPSEIPEDEFLNQDEFHRDSFADTE 120

Query: 121 ---------DGAKFVADTFSNGIND-RKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKD 180
                    DG  FVAD FS+G ++  KIRAYYEE+LK NPSDAL+LRNYGKFLHEV KD
Sbjct: 121 FLNSGIVSGDGGDFVADKFSDGSSESSKIRAYYEEMLKSNPSDALILRNYGKFLHEVEKD 180

Query: 181 TIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHY 240
           + RAEECYSRAILASP DGELLALYGKLVWDTQRDKRRAQYYFDRAV ASPNDCLVIG+Y
Sbjct: 181 SKRAEECYSRAILASPRDGELLALYGKLVWDTQRDKRRAQYYFDRAVCASPNDCLVIGYY 240

Query: 241 AHFLWQVEDDEAEA-----APPPAMVAA 251
           AHFLW VEDDE EA     AP PA+VAA
Sbjct: 241 AHFLWLVEDDEEEATAVAPAPAPALVAA 268

[Close]

BLAST of LsiUNG000260 vs. NCBI nr
Match: KAG6606262.1 (hypothetical protein SDJN03_03579, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.5 bits (916), Expect = 9.7e-95
Identity = 195/269 (72.49%), Postives = 221/269 (82.16%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSSSSPKISLHFEINHRRGNNS 60
           MKSALLRT S+PVI P+  ASSSFSN +PL+GVF+ HKSS SSPKISLHFE+N+ RG NS
Sbjct: 1   MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNS 60

Query: 61  SSIRRAASESDITRSLHEVSNPYDQSSGV--RSRSRSFPSGIPEEEFLNEDEFDSNSME- 120
           S IRRA+SESDI+RSLHEVSNPYDQ  GV  RSR+RS  S IPEEEFLN DEFDS+SME 
Sbjct: 61  SGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNLDEFDSDSMED 120

Query: 121 ------------DGAKFVADTFSNGINDR-KIRAYYEELLKLNPSDALLLRNYGKFLHEV 180
                       DGA+F  DTF +G NDR KI AYYEELLKLNP+DALLLRNYGKFLHEV
Sbjct: 121 DSGCLDSGIGCSDGAEFFTDTFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEV 180

Query: 181 LKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVI 240
            KD +R+EECYSRAILA+P+DGELLALYGKLVW++ +DK+RA+YYFDRAV ASPNDCLVI
Sbjct: 181 EKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVI 240

Query: 241 GHYAHFLWQVEDDEAEAAP---PPAMVAA 251
           G+YA+FLWQ+EDDE E A    P AMVAA
Sbjct: 241 GYYAYFLWQIEDDEEEEAAEVWPAAMVAA 269

[Close]

BLAST of LsiUNG000260 vs. TAIR 10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-38
Identity = 108/289 (37.37%), Postives = 152/289 (52.60%), Query Frame = 0


Query: 1   MKSALLRTGSVPVISPAAAASSSFSNNKPLYGVFSCHKSSS-----SSPKISLHFEINHR 60
           MKS L+RTGS+PV+     +  S     P+    S    SS     +  KIS+  + N  
Sbjct: 1   MKSLLMRTGSMPVLQNRLISGGSSRKMTPISRTNSVESLSSYGERFAGGKISIEVKAN-- 60

Query: 61  RGNNSSSIRRAASESDITRSLHEVSNPYDQSSGVRSRSRSFPSGIPEEEFLNEDE----- 120
                  +RR  SESD+ RS   +          R  S+  P+ IPE++   E+E     
Sbjct: 61  -----VGMRRVLSESDVIRSERMLK---------RVGSKPSPARIPEDDEAGEEEIRFAD 120

Query: 121 ----------------FDSNSMEDGAKF---VADTFSNGINDR-KIRAYYEELLKLNPSD 180
                           F    +  G+ +     +    G  D+ KI  YY E+L+ NP++
Sbjct: 121 GWGSMISGGLPVEEKCFTGGGVGGGSGYSGGYGNGGGGGYEDKSKIGDYYREMLRSNPNN 180

Query: 181 ALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWDTQRDKRRAQYYF 240
           +LLL NYGKFL+EV KD   AEE Y RAIL +P DGE L++YG+L+W+T+RD++RAQ YF
Sbjct: 181 SLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYF 240

Query: 241 DRAVYASPNDCLVIGHYAHFLWQVEDDEAE---------AAPPPAMVAA 251
           D+AV ASPNDC+V+G YA F+W+ EDD+ +          A  P MV+A
Sbjct: 241 DQAVNASPNDCMVLGSYARFMWEAEDDDDDDEEEEEEEWMAASPLMVSA 273

[Close]

BLAST of LsiUNG000260 vs. TAIR 10
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 4.6e-26
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 133 DRKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALY 192
           D     +Y ++++ NP + + L NY KFL EV KD ++AEE   RAIL SP DG +LA+Y
Sbjct: 153 DDNTDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMY 212

Query: 193 GKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAE 241
            +LVW   +D  RA+ YF++AV A+P DC V   YA FLW  E++E E
Sbjct: 213 AELVWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEE 260

[Close]

BLAST of LsiUNG000260 vs. TAIR 10
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 7.3e-24
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 136 IRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILA-SPTDGELLALYGK 195
           +  YYEE+++  P D LLL NY +FL EV  D  +AEE   RA+L+ S  DGELL++YG 
Sbjct: 110 VDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGD 169

Query: 196 LVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAE 241
           L+W    D  RAQ Y+D+AV +SP+DC V+  YA FLW  E++  E
Sbjct: 170 LIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEEVEE 215

[Close]

BLAST of LsiUNG000260 vs. TAIR 10
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-22
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 139 YYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELLALYGKLVWD 198
           YY E++  NP ++LL  NY KFL EV  D  +AEE   RAIL +  DG +L+LY  L+  
Sbjct: 168 YYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILH 227

Query: 199 TQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDEAEAA 243
             +D++RA  Y+ +AV  SP DC V   YA FLW V++DE + A
Sbjct: 228 NHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEA 271

[Close]

BLAST of LsiUNG000260 vs. TAIR 10
Match: AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-20
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 0


Query: 130 GINDRKIRAYYEELLKLNPSDALLLRNYGKFLHEVLKDTIRAEECYSRAILASPTDGELL 189
           G +D+    YY+ +L+  P   LLL+NY KFL E   D   AEE Y +  +  P+DG  L
Sbjct: 115 GYDDKNCGDYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVAL 174

Query: 190 ALYGKLVWDTQRDKRRAQYYFDRAVYASPNDCLVIGHYAHFLWQVEDDE 239
           A YG+LV    +D+ +A  YF+RAV ASP+D +V+  YA FLW++  D+
Sbjct: 175 ANYGRLVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADD 222

The following BLAST results are available for this feature:

BLAST of LsiUNG000260 vs.


Match Name	E-value	Identity	Description

BLAST of LsiUNG000260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EX26	1.2e-95	72.49	uncharacterized protein LOC111437316 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]
A0A6J1HIV3	2.8e-95	73.51	uncharacterized protein LOC111463957 OS=Cucurbita moschata OX=3662 GN=LOC1114639...	[more]
A0A6J1HRN2	8.0e-95	73.61	uncharacterized protein LOC111466874 OS=Cucurbita maxima OX=3661 GN=LOC111466874...	[more]
A0A6J1K5B2	2.6e-93	71.38	uncharacterized protein LOC111491305 OS=Cucurbita maxima OX=3661 GN=LOC111491305...	[more]
A0A5D3E5U4	1.3e-89	72.37	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of LsiUNG000260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888361.1	2.1e-113	85.50	uncharacterized protein LOC120078207 [Benincasa hispida]	[more]
KAG6571653.1	2.0e-95	73.88	hypothetical protein SDJN03_28381, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930988.1	2.6e-95	72.49	uncharacterized protein LOC111437316 [Cucurbita moschata] >KAG7036203.1 hypothet...	[more]
XP_022963763.1	5.7e-95	73.51	uncharacterized protein LOC111463957 [Cucurbita moschata]	[more]
KAG6606262.1	9.7e-95	72.49	hypothetical protein SDJN03_03579, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of LsiUNG000260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17940.1	1.1e-38	37.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G20190.1	4.6e-26	47.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32340.1	7.3e-24	49.06	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80130.1	4.0e-22	46.15	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04530.1	8.4e-20	43.12	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 128..233 e-value: 3.2E-12 score: 48.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 138..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..94
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 1..241
None	No IPR available	PANTHER	PTHR26312:SF123	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 1..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
LsiUNG000260.1	LsiUNG000260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding