LsiUNG000160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsiUNG000160
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr00: 267410 .. 269140 (-)
RNA-Seq ExpressionLsiUNG000160
SyntenyLsiUNG000160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTTGGGATCGGGATGGTAATTAATGTGTTTATTGAATGGGTAATCATATGGGTTATTGTTTAGAAACTATTTGATTTTTATTCTTTGGTTTTTGAAAATTAAGAATATTTCCTATCTATTTTTTACTATAGTTTTCATCTTTATTAGGTAAAAGAGTTGAATTTTTAGTCCAATTTTAAAAATAAAAATATGTTTTCAAAAACCTTTTTTTTTAGTTTTTAAAATTTAGCTTGGTTTTTGAAAATATTGATGAAAAATATATGACAAAGTCATAAATTTAGAGGTAAAATTGGTGTTTATAAGCTCATTTTTTCAAAAACTAAAAGCTAAAAACCAAAATTTTATCAAATGAGACCTTAGTTTTTGGTTTTTAAAAATTAAGTCTATAAGTACATTTTATACTTCTAAATTTCTTGTTTTATTATTTACTTTGTACCAACGTTTTCGAAAATCAAGCCAAGTTTTTTTTTAAAAAAAAAAAAGAAGTAGTTTTTACTTAAGAAAGATGAAAACAATTTAAGAAATTAAGAGAAAATAGACTTAATTTTCAAAAAGACCAAAATAAAAAAATTGAATGGTTACCAAACGAGACCTAAAATATTTATTATGTTTTTAGTAGTAATTACTAAGTTATATTTGAAATTAAACCTTAACTGTCATCTTGAGTATATCTCAACGGGTTTTTGCATATACCTTGAGGTCAAAATTTCGAATCCTCTAACACCATATGTAGTTTCTCTAATACCATATGTAGTTGAACTACTTTTCAGCTCAACCAACCACATTTGGCAACCAACTCCGTCGATCATCTCCAACAACTAATTCTGACGACCAGCTTGGCTGACCACATACTAAAAAAAACTCGGTGGGTGAACATGTTTTTAAATTTATTAGTTCATAGCGTGTTTAATAGCCTTCTTTATAGAAATTTGCTTATAATAAAATCACTTTAACAAACTTGTGTATAAAAATGTTTTTGAGAAAATGTAACTAAACAACATGAGTGTTTTTATTTTAAACGATTTTTTATAAAAAAAAATGTTAAAATGAAAAATGATTTGTTGAAAAACGTTTTTTACTAGGTAATCAAAACATTACCCAATTCAAGTTTTTTAGGTTAAAAAGAAGATTAAATGATTTATTAAACAAAAGACTTCGAGGTTGATAATATAAACACTATGCCAGTTTGAGATATGCTCGTTTTGGCCAAAATCTTTTATTTCTATTTGCAAAATATGATATTTAACATACCACTACTTGTTTAATATGAAAAAGAAATCCTCATAAACCTACACTTAATAACTTCAAGTTAAACAAATTAACACTATAAATACTTACTTTTTAAACTCAAACTAAAATATTCTACTCCCCAAATACAATCTTCAACTATTATAATAAACTTTGATAACTTTGAATATCAAACATTGCTTTAAAAAGATTACCAAACACAAATTACAAAAACTCAAATTCAGTGGCTAAATTTGTAATTTAACCATATTTGTTTTATAAAGTAAGGAACATCCTCCCGACTTCTGAGCATTTCCGGTTGAGGAAGTTCGCTTTTACTCCTCATCTTTCCCGCCGGAAACTCGACTTCCTCGCCGGAAAACGGCTTCAACCTCCGGAGGAGCTCTCATCTCTTCCGAATAATGCTCTTCTTTCTCATTTTCCCTACTCTTTTACCTCGGATTGGTCGGAGAATGGCTTTCGATCTTCAAGTAATTAG

mRNA sequence

ATGAGGAACATCCTCCCGACTTCTGAGCATTTCCGGTTGAGGAAGTTCGCTTTTACTCCTCATCTTTCCCGCCGGAAACTCGACTTCCTCGCCGGAAAACGGCTTCAACCTCCGGAGGAGCTCTCATCTCTTCCGAATAATGCTCTTCTTTCTCATTTTCCCTACTCTTTTACCTCGGATTGGTCGGAGAATGGCTTTCGATCTTCAAGTAATTAG

Coding sequence (CDS)

ATGAGGAACATCCTCCCGACTTCTGAGCATTTCCGGTTGAGGAAGTTCGCTTTTACTCCTCATCTTTCCCGCCGGAAACTCGACTTCCTCGCCGGAAAACGGCTTCAACCTCCGGAGGAGCTCTCATCTCTTCCGAATAATGCTCTTCTTTCTCATTTTCCCTACTCTTTTACCTCGGATTGGTCGGAGAATGGCTTTCGATCTTCAAGTAATTAG

Protein sequence

MRNILPTSEHFRLRKFAFTPHLSRRKLDFLAGKRLQPPEELSSLPNNALLSHFPYSFTSDWSENGFRSSSN
Homology
[Close]
BLAST of LsiUNG000160 vs. ExPASy TrEMBL
Match: A0A5D3E6C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004700 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-06
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 29 FLAGKRLQPPEELSSLPNNALLSHFPYSFTSDWSENGFRSSSN 72
          F AGK LQPPE L S  NNA L HFP+SF SDWSE+G RSSS+
Sbjct: 15 FPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSS 57

[Close]
BLAST of LsiUNG000160 vs. ExPASy TrEMBL
Match: A0A1S4E5J6 (uncharacterized protein LOC107992217 OS=Cucumis melo OX=3656 GN=LOC107992217 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.7e-06
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 29 FLAGKRLQPPEELSSLPNNALLSHFPYSFTSDWSENGFRSSSN 72
          F AGK LQPPE L S  NNA L HFP+SF SDWSE+G RSSS+
Sbjct: 15 FPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSS 57

[Close]
BLAST of LsiUNG000160 vs. NCBI nr
Match: XP_016903492.1 (PREDICTED: uncharacterized protein LOC107992217 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 29 FLAGKRLQPPEELSSLPNNALLSHFPYSFTSDWSENGFRSSSN 72
          F AGK LQPPE L S  NNA L HFP+SF SDWSE+G RSSS+
Sbjct: 15 FPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSS 57

[Close]
BLAST of LsiUNG000160 vs. NCBI nr
Match: TYK31186.1 (uncharacterized protein E5676_scaffold455G004700 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 29 FLAGKRLQPPEELSSLPNNALLSHFPYSFTSDWSENGFRSSSN 72
          F AGK LQPPE L S  NNA L HFP+SF SDWSE+G RSSS+
Sbjct: 15 FPAGKPLQPPENLYSRLNNAHLPHFPFSFRSDWSESGVRSSSS 57

The following BLAST results are available for this feature:
BLAST of LsiUNG000160 vs.
Match NameE-valueIdentityDescription
BLAST of LsiUNG000160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E6C45.7e-0669.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4E5J65.7e-0669.77uncharacterized protein LOC107992217 OS=Cucumis melo OX=3656 GN=LOC107992217 PE=... [more]
BLAST of LsiUNG000160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016903492.11.2e-0569.77PREDICTED: uncharacterized protein LOC107992217 [Cucumis melo][more]
TYK31186.11.2e-0569.77uncharacterized protein E5676_scaffold455G004700 [Cucumis melo var. makuwa][more]
BLAST of LsiUNG000160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
LsiUNG000160.1LsiUNG000160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane