Lsi11G016850 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G016850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr11: 25059507 .. 25059797 (+)
RNA-Seq Expression	Lsi11G016850
Synteny	Lsi11G016850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCGCCGCCCTCCGATTCCACTCCGACAAGGAAAACCTCCCGCCGTTTACCCACAAGCAATTCCCCTCAAATCCCAAGAAACCCATCATTCGAAGGAGATTCAATCGGAAGCCGCTTCTCGATATAACCAATTTGTTTGAAAACTCTGTTCGATTCGGTTCGATTCAAGATGGATTCGTCGGCTCCGTTGAATCGGTTTGTTTGCCGTCGAATTCCAGGAAGAGGAAAGCTGGTGATGAAATTTGTTCTGGAACTGCCAAATCGCTCAGAATGGGATTCAGATAA

mRNA sequence

ATGGAGATCGCCGCCCTCCGATTCCACTCCGACAAGGAAAACCTCCCGCCGTTTACCCACAAGCAATTCCCCTCAAATCCCAAGAAACCCATCATTCGAAGGAGATTCAATCGGAAGCCGCTTCTCGATATAACCAATTTGTTTGAAAACTCTGTTCGATTCGGTTCGATTCAAGATGGATTCGTCGGCTCCGTTGAATCGGTTTGTTTGCCGTCGAATTCCAGGAAGAGGAAAGCTGGTGATGAAATTTGTTCTGGAACTGCCAAATCGCTCAGAATGGGATTCAGATAA

Coding sequence (CDS)

ATGGAGATCGCCGCCCTCCGATTCCACTCCGACAAGGAAAACCTCCCGCCGTTTACCCACAAGCAATTCCCCTCAAATCCCAAGAAACCCATCATTCGAAGGAGATTCAATCGGAAGCCGCTTCTCGATATAACCAATTTGTTTGAAAACTCTGTTCGATTCGGTTCGATTCAAGATGGATTCGTCGGCTCCGTTGAATCGGTTTGTTTGCCGTCGAATTCCAGGAAGAGGAAAGCTGGTGATGAAATTTGTTCTGGAACTGCCAAATCGCTCAGAATGGGATTCAGATAA

Protein sequence

MEIAALRFHSDKENLPPFTHKQFPSNPKKPIIRRRFNRKPLLDITNLFENSVRFGSIQDGFVGSVESVCLPSNSRKRKAGDEICSGTAKSLRMGFR

Homology

[Close]

BLAST of Lsi11G016850 vs. ExPASy TrEMBL
Match: A0A0A0KE31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 78/96 (81.25%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPFTHKQFPSNPKKPIIRRRFNRKPLLDITNLFENSVRFGSIQDG 60
           ME +A+RFHSDKENLPPFTHK +PS PKKP IRRR NRKPLLDITN FEN++R GSIQDG
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120

Query: 61  FVGSVESVCLPSNSRKRKAGDEICSGTAKSLRMGFR 97
           F+ SVESVCL  NSRKRKAGDE+ SGTAKSLRMGFR
Sbjct: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

[Close]

BLAST of Lsi11G016850 vs. ExPASy TrEMBL
Match: A0A1Q3C6Z4 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19465 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.0e-10
Identity = 52/107 (48.60%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPFTHKQ-------FPSNPKKPIIRRRFNRKPLLDITNLFENSVR 60
           ME   L  + +KEN+PPF+ KQ        PS  K P  +RRF RKPL DITNLF NSV 
Sbjct: 8   MEAITLSDNYNKENIPPFSPKQANPVPVNAPSFKKIPTCKRRF-RKPLADITNLFNNSVS 67

Query: 61  FGSIQDG----FVGSVESVCLPSNSRKRKAGDEICSGTAKSLRMGFR 97
             S Q+           SVC P N+RKRKA   + S ++KSLRMGFR
Sbjct: 68  SSSTQESISLLLSSPPVSVCAP-NARKRKA---VGSSSSKSLRMGFR 109

[Close]

BLAST of Lsi11G016850 vs. ExPASy TrEMBL
Match: A0A7J7CET3 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW17G00130 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPF-------------THKQFPSNPKKPIIRRRFNRKPLLDITNL 60
           + + AL  H++KEN+PPF             + + F ++ K    R+   RKPL DITNL
Sbjct: 4   VSVVALSDHNNKENIPPFFPGPVSIERPDIQSLESFKNSSKFSSRRKFTTRKPLADITNL 63

Query: 61  FENSVRFGSIQDGFVGSVESVCL-PSNSRKRKAGDE-------ICSGTAKSLRMGFR 97
           F NSV +   +D    S  SV +  SN RKRK+ DE       ICS  +KSLRMGFR
Sbjct: 64  FTNSVAWEVRRDALAPSNLSVSVCTSNPRKRKSPDEEVEFVRVICS-DSKSLRMGFR 119

[Close]

BLAST of Lsi11G016850 vs. ExPASy TrEMBL
Match: A0A6J5UAF7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20443 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 51/120 (42.50%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPFTHKQFPSNP--------KKPIIRRRFNRKPLLDITNL--FEN 60
           ME +A R+HS+KENLPP +     +NP        KK   + R  RKPL DITNL  + N
Sbjct: 1   MEASACRYHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 61  SVRFG------SIQDGFVGSVESVC-LPSNSRKRKAGDE-------ICSGTAKSLRMGFR 97
              FG      S    F  S  SV    SNSRKRK+  E       + S  +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSKVNSSNSKSLRMGFR 120

[Close]

BLAST of Lsi11G016850 vs. ExPASy TrEMBL
Match: A0A2K3JL70 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g048400 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPFTHKQFP---SNPKKPIIRRRFNRKPLLDITNLFENSVRFGSI 60
           M+I+ +   ++KEN+PP      P   S+ KK    R+  R PL DITNLF+NS  F   
Sbjct: 1   MKISTMSIQTNKENIPPVNKNSIPLIASSFKKNSSNRKIKRIPLADITNLFQNSSPFTMT 60

Query: 61  QDG-FVGSV---ESVCLPSNSRKRKAGDEICSGTAKSLRMGFR 97
            +G  V SV    S+ L SNSR+R       +  +K+LRMGFR
Sbjct: 61  PEGNGVSSVLPSASILLRSNSRRRTLVVVAQATVSKTLRMGFR 103

[Close]

BLAST of Lsi11G016850 vs. NCBI nr
Match: KGN47955.1 (hypothetical protein Csa_002785 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 78/96 (81.25%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPFTHKQFPSNPKKPIIRRRFNRKPLLDITNLFENSVRFGSIQDG 60
           ME +A+RFHSDKENLPPFTHK +PS PKKP IRRR NRKPLLDITN FEN++R GSIQDG
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSIQDG 120

Query: 61  FVGSVESVCLPSNSRKRKAGDEICSGTAKSLRMGFR 97
           F+ SVESVCL  NSRKRKAGDE+ SGTAKSLRMGFR
Sbjct: 121 FIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

[Close]

BLAST of Lsi11G016850 vs. NCBI nr
Match: KAG6589263.1 (hypothetical protein SDJN03_17828, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 71/96 (73.96%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MEIAALRFHSDKENLPPFTHKQFPSNPKKPIIRRRFNRKPLLDITNLFENSVRFGSIQDG 60
          ME AA+RF S KENLP  + KQFP N KKPI RRR NRKPL DITN FE+SVRF  +QD 
Sbjct: 1  MEFAAVRFPSGKENLPLLSQKQFPPNQKKPITRRRLNRKPLADITNSFESSVRFSFVQD- 60

Query: 61 FVGSVESVCLPSNSRKRKAGDEICSGTAKSLRMGFR 97
            GSVESVCL  NS+KRKA DEICSGTAKSLRMGFR
Sbjct: 61 HSGSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR 95

[Close]

BLAST of Lsi11G016850 vs. NCBI nr
Match: GAV75989.1 (hypothetical protein CFOL_v3_19465, partial [Cephalotus follicularis])

HSP 1 Score: 73.9 bits (180), Expect = 8.2e-10
Identity = 52/107 (48.60%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPFTHKQ-------FPSNPKKPIIRRRFNRKPLLDITNLFENSVR 60
           ME   L  + +KEN+PPF+ KQ        PS  K P  +RRF RKPL DITNLF NSV 
Sbjct: 8   MEAITLSDNYNKENIPPFSPKQANPVPVNAPSFKKIPTCKRRF-RKPLADITNLFNNSVS 67

Query: 61  FGSIQDG----FVGSVESVCLPSNSRKRKAGDEICSGTAKSLRMGFR 97
             S Q+           SVC P N+RKRKA   + S ++KSLRMGFR
Sbjct: 68  SSSTQESISLLLSSPPVSVCAP-NARKRKA---VGSSSSKSLRMGFR 109

[Close]

BLAST of Lsi11G016850 vs. NCBI nr
Match: XP_038682707.1 (uncharacterized protein LOC119983110 [Tripterygium wilfordii] >KAF5732600.1 hypothetical protein HS088_TW17G00130 [Tripterygium wilfordii])

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-07
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPF-------------THKQFPSNPKKPIIRRRFNRKPLLDITNL 60
           + + AL  H++KEN+PPF             + + F ++ K    R+   RKPL DITNL
Sbjct: 4   VSVVALSDHNNKENIPPFFPGPVSIERPDIQSLESFKNSSKFSSRRKFTTRKPLADITNL 63

Query: 61  FENSVRFGSIQDGFVGSVESVCL-PSNSRKRKAGDE-------ICSGTAKSLRMGFR 97
           F NSV +   +D    S  SV +  SN RKRK+ DE       ICS  +KSLRMGFR
Sbjct: 64  FTNSVAWEVRRDALAPSNLSVSVCTSNPRKRKSPDEEVEFVRVICS-DSKSLRMGFR 119

[Close]

BLAST of Lsi11G016850 vs. NCBI nr
Match: CAB4273203.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-06
Identity = 51/120 (42.50%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 1   MEIAALRFHSDKENLPPFTHKQFPSNP--------KKPIIRRRFNRKPLLDITNL--FEN 60
           ME +A R+HS+KENLPP +     +NP        KK   + R  RKPL DITNL  + N
Sbjct: 1   MEASACRYHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 61  SVRFG------SIQDGFVGSVESVC-LPSNSRKRKAGDE-------ICSGTAKSLRMGFR 97
              FG      S    F  S  SV    SNSRKRK+  E       + S  +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSKVNSSNSKSLRMGFR 120

The following BLAST results are available for this feature:

BLAST of Lsi11G016850 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G016850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE31	2.9e-37	81.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1	[more]
A0A1Q3C6Z4	4.0e-10	48.60	Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3...	[more]
A0A7J7CET3	1.8e-07	41.03	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW17G00130 ...	[more]
A0A6J5UAF7	1.2e-06	42.50	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20443 PE=4 S...	[more]
A0A2K3JL70	1.6e-06	40.78	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g048400 PE=4 SV=1	[more]

BLAST of Lsi11G016850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47955.1	6.0e-37	81.25	hypothetical protein Csa_002785 [Cucumis sativus]	[more]
KAG6589263.1	1.0e-28	73.96	hypothetical protein SDJN03_17828, partial [Cucurbita argyrosperma subsp. sorori...	[more]
GAV75989.1	8.2e-10	48.60	hypothetical protein CFOL_v3_19465, partial [Cephalotus follicularis]	[more]
XP_038682707.1	3.8e-07	41.03	uncharacterized protein LOC119983110 [Tripterygium wilfordii] >KAF5732600.1 hypo...	[more]
CAB4273203.1	2.5e-06	42.50	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Lsi11G016850 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..28

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G016850.1	Lsi11G016850.1	mRNA