Lsi11G016830 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G016830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RING-H2 finger protein ATL40-like
Location	chr11: 25045538 .. 25046218 (-)
RNA-Seq Expression	Lsi11G016830
Synteny	Lsi11G016830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCTCCGCTACTCCATCGTTAGACGACGGCGGCGTCTTTTTCGGCCCCGATCGTCCTCACCGGAACCCATATGATTTAAACAACAAAATTATGCTCACCGCCATAATTTCCCTTTCTCTCGTCGTTCTTCTAGTCATTGCCCTTCACATTTACGCACGTTACGCCCTCCGCCGCCACGCACGGCGGCAGGCCGTCCTCCGCCGCCTCGGAATCCTCGCCATCGTCGACTCCGGCGACCCTCCCCCGCCGCCGTCCCGGTCCGGGCTCGACCCCTTGGTCATGGCGTCGCTTCCGGTCATCGTTTTCAAACACCAATCGGAAAATCCAGACCCATCCGGCGCCGCCGTGGAGTGTGCCGTGTGCTTAAGCGCTATCGAGGACGGCGAGACGGCGAGAATTTTGCCCAATTGTAAACACGTTTTCCATTTGGAATGTATTGATAAATGGCTTGGGTCGCATTCCACGTGTCCGATTTGTCGGACTGAGGCGGCACCGATGATCGTGCCGGAACCTCGGGAGGCTCCGGCGGAAGCGGTGGCGGAGGGCGGTGGTGGGTCAAGCTCCCGATTGAGTTCGTTCAGAAGGATTCTAAGTAGAGAAAGGTCTTCGCGAAGGATTCAACCTTGTGTCCGCCAAAATAGAAACGACGACGTTCAGGACTTGGAAGCCCAGTAA

mRNA sequence

ATGTCCTCCTCCGCTACTCCATCGTTAGACGACGGCGGCGTCTTTTTCGGCCCCGATCGTCCTCACCGGAACCCATATGATTTAAACAACAAAATTATGCTCACCGCCATAATTTCCCTTTCTCTCGTCGTTCTTCTAGTCATTGCCCTTCACATTTACGCACGTTACGCCCTCCGCCGCCACGCACGGCGGCAGGCCGTCCTCCGCCGCCTCGGAATCCTCGCCATCGTCGACTCCGGCGACCCTCCCCCGCCGCCGTCCCGGTCCGGGCTCGACCCCTTGGTCATGGCGTCGCTTCCGGTCATCGTTTTCAAACACCAATCGGAAAATCCAGACCCATCCGGCGCCGCCGTGGAGTGTGCCGTGTGCTTAAGCGCTATCGAGGACGGCGAGACGGCGAGAATTTTGCCCAATTGTAAACACGTTTTCCATTTGGAATGTATTGATAAATGGCTTGGGTCGCATTCCACGTGTCCGATTTGTCGGACTGAGGCGGCACCGATGATCGTGCCGGAACCTCGGGAGGCTCCGGCGGAAGCGGTGGCGGAGGGCGGTGGTGGGTCAAGCTCCCGATTGAGTTCGTTCAGAAGGATTCTAAGTAGAGAAAGGTCTTCGCGAAGGATTCAACCTTGTGTCCGCCAAAATAGAAACGACGACGTTCAGGACTTGGAAGCCCAGTAA

Coding sequence (CDS)

ATGTCCTCCTCCGCTACTCCATCGTTAGACGACGGCGGCGTCTTTTTCGGCCCCGATCGTCCTCACCGGAACCCATATGATTTAAACAACAAAATTATGCTCACCGCCATAATTTCCCTTTCTCTCGTCGTTCTTCTAGTCATTGCCCTTCACATTTACGCACGTTACGCCCTCCGCCGCCACGCACGGCGGCAGGCCGTCCTCCGCCGCCTCGGAATCCTCGCCATCGTCGACTCCGGCGACCCTCCCCCGCCGCCGTCCCGGTCCGGGCTCGACCCCTTGGTCATGGCGTCGCTTCCGGTCATCGTTTTCAAACACCAATCGGAAAATCCAGACCCATCCGGCGCCGCCGTGGAGTGTGCCGTGTGCTTAAGCGCTATCGAGGACGGCGAGACGGCGAGAATTTTGCCCAATTGTAAACACGTTTTCCATTTGGAATGTATTGATAAATGGCTTGGGTCGCATTCCACGTGTCCGATTTGTCGGACTGAGGCGGCACCGATGATCGTGCCGGAACCTCGGGAGGCTCCGGCGGAAGCGGTGGCGGAGGGCGGTGGTGGGTCAAGCTCCCGATTGAGTTCGTTCAGAAGGATTCTAAGTAGAGAAAGGTCTTCGCGAAGGATTCAACCTTGTGTCCGCCAAAATAGAAACGACGACGTTCAGGACTTGGAAGCCCAGTAA

Protein sequence

MSSSATPSLDDGGVFFGPDRPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEAVAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ

Homology

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BLAST of Lsi11G016830 vs. ExPASy Swiss-Prot
Match: Q9SLC3 (E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-35
Identity = 98/226 (43.36%), Postives = 130/226 (57.52%), Query Frame = 0


Query: 21  PHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLGILAIVDSG 80
           P+ + YDLN+KIML A+ SLS V+L+V ALH+YAR+ LR   RR+   R L ++      
Sbjct: 20  PNPSTYDLNSKIMLAAVASLSGVILIVFALHLYARFVLR---RRREAFRGLPVI----FR 79

Query: 81  DPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSAIEDGETARILPNCK 140
            P   P R GL+P V+ASLP             + +A ECAVCLS +++ + AR LPNCK
Sbjct: 80  HPFEMPKR-GLNPTVIASLPTFTV---GATDGVAASATECAVCLSVLKEQDKARELPNCK 139

Query: 141 HVFHLECIDKWLGSHSTCPICRTEA--APMIVPEPREAPA------------EAVAEGGG 200
           H+FH++C+D WL + STCP+CRTE    P + PEPRE P                 E   
Sbjct: 140 HIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAAS 199

Query: 201 GSS----------SRLSSFRRILSRERSSRRI-QPCVRQNRNDDVQ 222
            SS          SRL+SFR+IL+RERSS RI   C  Q+R  D++
Sbjct: 200 SSSSDNKTVVSPASRLNSFRKILTRERSSNRINHSCPDQDRVADLE 234

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BLAST of Lsi11G016830 vs. ExPASy Swiss-Prot
Match: Q9SLC4 (RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-34
Identity = 91/210 (43.33%), Postives = 125/210 (59.52%), Query Frame = 0


Query: 26  YDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLGILAIVDSGDPPPP 85
           YD ++KI L   +S S+++++V   ++YA++ L R +  Q +       ++V       P
Sbjct: 22  YDASSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRSAFQDL-----SFSVVSQ-----P 81

Query: 86  PSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSAIEDGETARILPNCKHVFHL 145
           P R GLD LV+ASLP  V   +++      A  ECAVCLS +E+ + AR+LPNCKHVFH+
Sbjct: 82  PKR-GLDSLVIASLPTFVVGIKND-----VAGTECAVCLSLLEEKDNARMLPNCKHVFHV 141

Query: 146 ECIDKWLGSHSTCPICRTEAA---PMIVPEPREAPAEAVA----------EGGGGSSSRL 205
            C+D WL + STCP+CRTEA    P + PEPRE P    A          + GG S SRL
Sbjct: 142 SCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLDFAGVDNKTGGSSVSRL 201

Query: 206 SSFRRILSRERSS-RRIQPCVRQNRNDDVQ 222
            SFRRIL+RERSS RR    V Q+R  D++
Sbjct: 202 DSFRRILTRERSSNRRDHSRVDQDRELDIE 215

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BLAST of Lsi11G016830 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-27
Identity = 81/212 (38.21%), Postives = 113/212 (53.30%), Query Frame = 0


Query: 18  PDRPHRN------PYDLNNKIMLTAIISLSLVVLLVIALHIYARY----ALRRHARRQAV 77
           P RP  N       Y ++ KIML+AI+ L  VV+L++ LH+YAR+    A RRH RR++ 
Sbjct: 10  PFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSR 69

Query: 78  LRRLGILAIVDSGDPPPPP----SRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVC 137
            RR  +  +  + DP        +  GLDP V+ SLPV  F  ++ + DP    +ECAVC
Sbjct: 70  NRRATM--VFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDET-HKDP----IECAVC 129

Query: 138 LSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRT-------------------- 193
           LS  E+ ET R+LPNC+H FH++CID W  SHSTCP+CR+                    
Sbjct: 130 LSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVV 189

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BLAST of Lsi11G016830 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-24
Identity = 64/168 (38.10%), Postives = 91/168 (54.17%), Query Frame = 0


Query: 26  YDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLGILAIVDSGDPPPP 85
           Y LN KIML+++I L + V++++  H YAR+  RRH RR  + RR+       S      
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRR--IRRRIRSHLRTLSAS---- 81

Query: 86  PSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSAIEDGETARILPNCKHVFHL 145
           P    LD  V+  +P+ V+   S+NP P     EC+VCLS  E+ +  R+LP C H FH+
Sbjct: 82  PRDQALDQAVLDKIPIFVY--SSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHV 141

Query: 146 ECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEAVAEGGGGSSSRLS 194
           +CID W  S STCP+CR          P + P + +  G   SSS L+
Sbjct: 142 DCIDTWFRSRSTCPLCRA---------PVQPPFQVIETGSSSSSSPLT 172

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BLAST of Lsi11G016830 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.9e-24
Identity = 70/177 (39.55%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 26  YDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLG--ILAIVDSGDPP 85
           Y LN KIML ++I L + V+L++  H YAR+  RR  RR  + RR+   + ++  + DP 
Sbjct: 22  YSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRR--IRRRISAHLRSLAAARDPT 81

Query: 86  PPPSR-SGLDPLVMASLPVIVFKHQS-ENPDPSGAAVECAVCLSAIEDGETARILPNCKH 145
              S  S LDP V+  +P+ V+  ++ E+P       EC+VCLS  E+ +  R+LP C H
Sbjct: 82  QSSSSLSPLDPTVLEKIPIFVYSVKTHESP-----LEECSVCLSEFEEDDEGRVLPKCGH 141

Query: 146 VFHLECIDKWLGSHSTCPICRT---EAAPMIVPEPREAPAEAV-----AEGGGGSSS 191
           VFH++CID W  S S+CP+CR     A P+  PEP  A   +V      E G  SSS
Sbjct: 142 VFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSS 191

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BLAST of Lsi11G016830 vs. ExPASy TrEMBL
Match: A0A5A7V7D1 (RING-H2 finger protein ATL40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00200 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 195/226 (86.28%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MSSSATPSLDDGGVFFGPDRPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60
           MSSSA PS DDG ++FGP  PHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR
Sbjct: 1   MSSSANPSFDDGDIYFGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVEC 120
           HARRQAVLRRLGILA+VDS DP  PPSRSGLDPLVMAS+PV+VFKHQSENP+PSG AVEC
Sbjct: 61  HARRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVEC 120

Query: 121 AVCLSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEA 180
           AVCLSAI DGETARILPNCKHVFH+ECIDKW GSHSTCPICRTEAAPM++PEPRE PA  
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           V E GGGSSSRLSSFRRILSRERSS RIQPCV Q+RND V DLE+Q
Sbjct: 181 VGESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

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BLAST of Lsi11G016830 vs. ExPASy TrEMBL
Match: A0A1S4DXK5 (RING-H2 finger protein ATL40-like OS=Cucumis melo OX=3656 GN=LOC103491347 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 195/226 (86.28%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MSSSATPSLDDGGVFFGPDRPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60
           MSSSA PS DDG ++FGP  PHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR
Sbjct: 1   MSSSANPSFDDGDIYFGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVEC 120
           HARRQAVLRRLGILA+VDS DP  PPSRSGLDPLVMAS+PV+VFKHQSENP+PSG AVEC
Sbjct: 61  HARRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVEC 120

Query: 121 AVCLSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEA 180
           AVCLSAI DGETARILPNCKHVFH+ECIDKW GSHSTCPICRTEAAPM++PEPRE PA  
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           V E GGGSSSRLSSFRRILSRERSS RIQPCV Q+RND V DLE+Q
Sbjct: 181 VGESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

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BLAST of Lsi11G016830 vs. ExPASy TrEMBL
Match: A0A0A0KJL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G420520 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.4e-100
Identity = 188/229 (82.10%), Postives = 202/229 (88.21%), Query Frame = 0


Query: 1   MSSSATPSLDDGGVFFGPDRPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60
           MSS   PS D   ++FGP  PHRNPYDLNNKIMLTAI+SLSLVV+LVIALHIYARYALRR
Sbjct: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVEC 120
           HARRQAVLRRLGILA +DSGD  PPPSRSGLDPLVMAS+PV+VFKHQSE+PDPSG  VEC
Sbjct: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQSESPDPSGGGVEC 120

Query: 121 AVCLSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEA 180
           AVCLSAI DGETARILPNCKHVFH+ECIDKW GSHSTCPICRTEAAPM++PEPRE PA  
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VAE---GGGGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           V E   GGGGS+SRLSSFRRILSRERSS RIQPCV Q+RND V DLE+Q
Sbjct: 181 VGEGGGGGGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 229

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BLAST of Lsi11G016830 vs. ExPASy TrEMBL
Match: A0A6J1ESR2 (RING-H2 finger protein ATL40-like OS=Cucurbita moschata OX=3662 GN=LOC111437227 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 181/220 (82.27%), Postives = 189/220 (85.91%), Query Frame = 0


Query: 8   SLDDGGVFFGPD-RPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 67
           S D G   F  D RP+RNPY+LNN+IMLTAIISLSLVVLLVIALHIYARYALRRHARRQA
Sbjct: 5   SFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 64

Query: 68  VLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSA 127
           VLRRLGILA+VDS D P PP  SGLDPLVMASLPV+VFKHQ ENP    AAVECAVCL A
Sbjct: 65  VLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAVCLCA 124

Query: 128 IEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEAVAEGGG 187
           +EDGE AR+LPNCKH FHLECIDKW G HSTCP CRTEAAPMI PEPREAP   VAE GG
Sbjct: 125 VEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAP---VAESGG 184

Query: 188 GSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           GSSSRLSSFRRILSRERSSRRIQPCVR+N NDDVQDLE Q
Sbjct: 185 GSSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

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BLAST of Lsi11G016830 vs. ExPASy TrEMBL
Match: A0A6J1JP92 (E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita maxima OX=3661 GN=LOC111486268 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.4e-85
Identity = 177/221 (80.09%), Postives = 187/221 (84.62%), Query Frame = 0


Query: 8   SLDDGGVFFGPD-RPHRN-PYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQ 67
           S D G   F  D R +RN PY+LNN+IML+AIISLSLVVLLVIALHIYARYALRRHARRQ
Sbjct: 5   SFDAGDSPFWVDHRSNRNHPYNLNNRIMLSAIISLSLVVLLVIALHIYARYALRRHARRQ 64

Query: 68  AVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLS 127
           AVLRR GILA+V S D PPPP  SGLDPLVMASLPV+VFKHQ ENP    AAVECAVCL 
Sbjct: 65  AVLRRRGILALVVSSDLPPPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAVCLC 124

Query: 128 AIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEAVAEGG 187
           A+E+GE AR+LPNCKH FHLECIDKW G HSTCPICRTEAAPMI PEPREAP   VAE G
Sbjct: 125 AVENGEEARVLPNCKHTFHLECIDKWFGLHSTCPICRTEAAPMIRPEPREAP---VAESG 184

Query: 188 GGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           GGSSSRLSSF RILSRERSSRRIQPCVR+N NDDVQDLE Q
Sbjct: 185 GGSSSRLSSFGRILSRERSSRRIQPCVRENGNDDVQDLERQ 218

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BLAST of Lsi11G016830 vs. NCBI nr
Match: XP_038877602.1 (RING-H2 finger protein ATL40-like [Benincasa hispida])

HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-111
Identity = 210/228 (92.11%), Postives = 216/228 (94.74%), Query Frame = 0


Query: 1   MSSSATPSLDDGG--VFFGPDRPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYAL 60
           MSSSA PS DDG   +FFGP  PHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYAL
Sbjct: 1   MSSSANPSFDDGDGYIFFGPAHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYAL 60

Query: 61  RRHARRQAVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAV 120
           RR ARRQAVLRRLGILA+VDSGDPP PPSRSGLDPLVMAS+PVIVFKHQSENPDPSGAAV
Sbjct: 61  RRQARRQAVLRRLGILALVDSGDPPLPPSRSGLDPLVMASMPVIVFKHQSENPDPSGAAV 120

Query: 121 ECAVCLSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPA 180
           ECAVCLS IEDGETARILPNCKHVFHLECIDKW GSHSTCPICRTEAAPMI+PEPREAPA
Sbjct: 121 ECAVCLSGIEDGETARILPNCKHVFHLECIDKWFGSHSTCPICRTEAAPMILPEPREAPA 180

Query: 181 EAVAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
            AVAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQ+RNDDVQDLE+Q
Sbjct: 181 AAVAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQSRNDDVQDLESQ 228

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BLAST of Lsi11G016830 vs. NCBI nr
Match: XP_016900708.1 (PREDICTED: RING-H2 finger protein ATL40-like [Cucumis melo] >KAA0061641.1 RING-H2 finger protein ATL40-like [Cucumis melo var. makuwa] >TYK05865.1 RING-H2 finger protein ATL40-like [Cucumis melo var. makuwa])

HSP 1 Score: 389.4 bits (999), Expect = 2.1e-104
Identity = 195/226 (86.28%), Postives = 206/226 (91.15%), Query Frame = 0


Query: 1   MSSSATPSLDDGGVFFGPDRPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60
           MSSSA PS DDG ++FGP  PHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR
Sbjct: 1   MSSSANPSFDDGDIYFGPSHPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVEC 120
           HARRQAVLRRLGILA+VDS DP  PPSRSGLDPLVMAS+PV+VFKHQSENP+PSG AVEC
Sbjct: 61  HARRQAVLRRLGILALVDSSDPHLPPSRSGLDPLVMASMPVVVFKHQSENPEPSGGAVEC 120

Query: 121 AVCLSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEA 180
           AVCLSAI DGETARILPNCKHVFH+ECIDKW GSHSTCPICRTEAAPM++PEPRE PA  
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VAEGGGGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           V E GGGSSSRLSSFRRILSRERSS RIQPCV Q+RND V DLE+Q
Sbjct: 181 VGESGGGSSSRLSSFRRILSRERSSLRIQPCVFQHRNDAVPDLESQ 226

[Close]

BLAST of Lsi11G016830 vs. NCBI nr
Match: XP_031744153.1 (RING-H2 finger protein ATL40 [Cucumis sativus] >KGN47956.1 hypothetical protein Csa_003069 [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 6.9e-100
Identity = 188/229 (82.10%), Postives = 202/229 (88.21%), Query Frame = 0


Query: 1   MSSSATPSLDDGGVFFGPDRPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRR 60
           MSS   PS D   ++FGP  PHRNPYDLNNKIMLTAI+SLSLVV+LVIALHIYARYALRR
Sbjct: 1   MSSPTNPSFDGDDIYFGPAHPHRNPYDLNNKIMLTAIVSLSLVVILVIALHIYARYALRR 60

Query: 61  HARRQAVLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVEC 120
           HARRQAVLRRLGILA +DSGD  PPPSRSGLDPLVMAS+PV+VFKHQSE+PDPSG  VEC
Sbjct: 61  HARRQAVLRRLGILAFIDSGDHHPPPSRSGLDPLVMASMPVVVFKHQSESPDPSGGGVEC 120

Query: 121 AVCLSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEA 180
           AVCLSAI DGETARILPNCKHVFH+ECIDKW GSHSTCPICRTEAAPM++PEPRE PA  
Sbjct: 121 AVCLSAIVDGETARILPNCKHVFHVECIDKWFGSHSTCPICRTEAAPMMLPEPREGPAAE 180

Query: 181 VAE---GGGGSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           V E   GGGGS+SRLSSFRRILSRERSS RIQPCV Q+RND V DLE+Q
Sbjct: 181 VGEGGGGGGGSTSRLSSFRRILSRERSSLRIQPCVLQHRNDAVPDLESQ 229

[Close]

BLAST of Lsi11G016830 vs. NCBI nr
Match: XP_022930874.1 (RING-H2 finger protein ATL40-like [Cucurbita moschata])

HSP 1 Score: 339.3 bits (869), Expect = 2.5e-89
Identity = 181/220 (82.27%), Postives = 189/220 (85.91%), Query Frame = 0


Query: 8   SLDDGGVFFGPD-RPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 67
           S D G   F  D RP+RNPY+LNN+IMLTAIISLSLVVLLVIALHIYARYALRRHARRQA
Sbjct: 5   SFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 64

Query: 68  VLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSA 127
           VLRRLGILA+VDS D P PP  SGLDPLVMASLPV+VFKHQ ENP    AAVECAVCL A
Sbjct: 65  VLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLENP----AAVECAVCLCA 124

Query: 128 IEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEAVAEGGG 187
           +EDGE AR+LPNCKH FHLECIDKW G HSTCP CRTEAAPMI PEPREAP   VAE GG
Sbjct: 125 VEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAP---VAESGG 184

Query: 188 GSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           GSSSRLSSFRRILSRERSSRRIQPCVR+N NDDVQDLE Q
Sbjct: 185 GSSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

[Close]

BLAST of Lsi11G016830 vs. NCBI nr
Match: KAG6589265.1 (E3 ubiquitin-protein ligase ATL41, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022964.1 E3 ubiquitin-protein ligase ATL41, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 336.7 bits (862), Expect = 1.6e-88
Identity = 180/220 (81.82%), Postives = 188/220 (85.45%), Query Frame = 0


Query: 8   SLDDGGVFFGPD-RPHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 67
           S D G   F  D RP+RNPY+LNN+IMLTAIISLSLVVLLVIALHIYARYALRRHARRQA
Sbjct: 5   SFDAGDSPFWVDHRPNRNPYNLNNRIMLTAIISLSLVVLLVIALHIYARYALRRHARRQA 64

Query: 68  VLRRLGILAIVDSGDPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSA 127
           VLRRLGILA+VDS D P PP  SGLDPLVMASLPV+VFKHQ EN     AAVECAVCL A
Sbjct: 65  VLRRLGILALVDSSDLPRPPRHSGLDPLVMASLPVVVFKHQLEN----AAAVECAVCLCA 124

Query: 128 IEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEAVAEGGG 187
           +EDGE AR+LPNCKH FHLECIDKW G HSTCP CRTEAAPMI PEPREAP   VAE GG
Sbjct: 125 VEDGEEARVLPNCKHTFHLECIDKWFGLHSTCPNCRTEAAPMIRPEPREAP---VAESGG 184

Query: 188 GSSSRLSSFRRILSRERSSRRIQPCVRQNRNDDVQDLEAQ 227
           GSSSRLSSFRRILSRERSSRRIQPCVR+N NDDVQDLE Q
Sbjct: 185 GSSSRLSSFRRILSRERSSRRIQPCVRENGNDDVQDLERQ 217

[Close]

BLAST of Lsi11G016830 vs. TAIR 10
Match: AT2G42360.1 (RING/U-box superfamily protein )

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-36
Identity = 98/226 (43.36%), Postives = 130/226 (57.52%), Query Frame = 0


Query: 21  PHRNPYDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLGILAIVDSG 80
           P+ + YDLN+KIML A+ SLS V+L+V ALH+YAR+ LR   RR+   R L ++      
Sbjct: 20  PNPSTYDLNSKIMLAAVASLSGVILIVFALHLYARFVLR---RRREAFRGLPVI----FR 79

Query: 81  DPPPPPSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSAIEDGETARILPNCK 140
            P   P R GL+P V+ASLP             + +A ECAVCLS +++ + AR LPNCK
Sbjct: 80  HPFEMPKR-GLNPTVIASLPTFTV---GATDGVAASATECAVCLSVLKEQDKARELPNCK 139

Query: 141 HVFHLECIDKWLGSHSTCPICRTEA--APMIVPEPREAPA------------EAVAEGGG 200
           H+FH++C+D WL + STCP+CRTE    P + PEPRE P                 E   
Sbjct: 140 HIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAAS 199

Query: 201 GSS----------SRLSSFRRILSRERSSRRI-QPCVRQNRNDDVQ 222
            SS          SRL+SFR+IL+RERSS RI   C  Q+R  D++
Sbjct: 200 SSSSDNKTVVSPASRLNSFRKILTRERSSNRINHSCPDQDRVADLE 234

[Close]

BLAST of Lsi11G016830 vs. TAIR 10
Match: AT2G42350.1 (RING/U-box superfamily protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.7e-35
Identity = 91/210 (43.33%), Postives = 125/210 (59.52%), Query Frame = 0


Query: 26  YDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLGILAIVDSGDPPPP 85
           YD ++KI L   +S S+++++V   ++YA++ L R +  Q +       ++V       P
Sbjct: 22  YDASSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRSAFQDL-----SFSVVSQ-----P 81

Query: 86  PSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSAIEDGETARILPNCKHVFHL 145
           P R GLD LV+ASLP  V   +++      A  ECAVCLS +E+ + AR+LPNCKHVFH+
Sbjct: 82  PKR-GLDSLVIASLPTFVVGIKND-----VAGTECAVCLSLLEEKDNARMLPNCKHVFHV 141

Query: 146 ECIDKWLGSHSTCPICRTEAA---PMIVPEPREAPAEAVA----------EGGGGSSSRL 205
            C+D WL + STCP+CRTEA    P + PEPRE P    A          + GG S SRL
Sbjct: 142 SCVDTWLTTQSTCPVCRTEAEPSHPRLEPEPREGPVGDFAPPLDFAGVDNKTGGSSVSRL 201

Query: 206 SSFRRILSRERSS-RRIQPCVRQNRNDDVQ 222
            SFRRIL+RERSS RR    V Q+R  D++
Sbjct: 202 DSFRRILTRERSSNRRDHSRVDQDRELDIE 215

[Close]

BLAST of Lsi11G016830 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 124.8 bits (312), Expect = 8.9e-29
Identity = 81/212 (38.21%), Postives = 113/212 (53.30%), Query Frame = 0


Query: 18  PDRPHRN------PYDLNNKIMLTAIISLSLVVLLVIALHIYARY----ALRRHARRQAV 77
           P RP  N       Y ++ KIML+AI+ L  VV+L++ LH+YAR+    A RRH RR++ 
Sbjct: 10  PFRPEDNNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSR 69

Query: 78  LRRLGILAIVDSGDPPPPP----SRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVC 137
            RR  +  +  + DP        +  GLDP V+ SLPV  F  ++ + DP    +ECAVC
Sbjct: 70  NRRATM--VFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDET-HKDP----IECAVC 129

Query: 138 LSAIEDGETARILPNCKHVFHLECIDKWLGSHSTCPICRT-------------------- 193
           LS  E+ ET R+LPNC+H FH++CID W  SHSTCP+CR+                    
Sbjct: 130 LSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVV 189

[Close]

BLAST of Lsi11G016830 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-25
Identity = 64/168 (38.10%), Postives = 91/168 (54.17%), Query Frame = 0


Query: 26  YDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLGILAIVDSGDPPPP 85
           Y LN KIML+++I L + V++++  H YAR+  RRH RR  + RR+       S      
Sbjct: 22  YALNGKIMLSSVIVLFVAVIMILCFHSYARWLFRRHNRR--IRRRIRSHLRTLSAS---- 81

Query: 86  PSRSGLDPLVMASLPVIVFKHQSENPDPSGAAVECAVCLSAIEDGETARILPNCKHVFHL 145
           P    LD  V+  +P+ V+   S+NP P     EC+VCLS  E+ +  R+LP C H FH+
Sbjct: 82  PRDQALDQAVLDKIPIFVY--SSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHV 141

Query: 146 ECIDKWLGSHSTCPICRTEAAPMIVPEPREAPAEAVAEGGGGSSSRLS 194
           +CID W  S STCP+CR          P + P + +  G   SSS L+
Sbjct: 142 DCIDTWFRSRSTCPLCRA---------PVQPPFQVIETGSSSSSSPLT 172

[Close]

BLAST of Lsi11G016830 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-25
Identity = 70/177 (39.55%), Postives = 100/177 (56.50%), Query Frame = 0


Query: 26  YDLNNKIMLTAIISLSLVVLLVIALHIYARYALRRHARRQAVLRRLG--ILAIVDSGDPP 85
           Y LN KIML ++I L + V+L++  H YAR+  RR  RR  + RR+   + ++  + DP 
Sbjct: 22  YSLNGKIMLASVIILFVAVILILCFHSYARWLFRRQNRR--IRRRISAHLRSLAAARDPT 81

Query: 86  PPPSR-SGLDPLVMASLPVIVFKHQS-ENPDPSGAAVECAVCLSAIEDGETARILPNCKH 145
              S  S LDP V+  +P+ V+  ++ E+P       EC+VCLS  E+ +  R+LP C H
Sbjct: 82  QSSSSLSPLDPTVLEKIPIFVYSVKTHESP-----LEECSVCLSEFEEDDEGRVLPKCGH 141

Query: 146 VFHLECIDKWLGSHSTCPICRT---EAAPMIVPEPREAPAEAV-----AEGGGGSSS 191
           VFH++CID W  S S+CP+CR     A P+  PEP  A   +V      E G  SSS
Sbjct: 142 VFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTEAGSSSSS 191

The following BLAST results are available for this feature:

BLAST of Lsi11G016830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLC3	2.8e-35	43.36	E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 ...	[more]
Q9SLC4	2.4e-34	43.33	RING-H2 finger protein ATL40 OS=Arabidopsis thaliana OX=3702 GN=ATL40 PE=2 SV=1	[more]
Q8L9T5	1.3e-27	38.21	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
O22255	3.8e-24	38.10	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9LZJ6	4.9e-24	39.55	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]

BLAST of Lsi11G016830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7D1	1.0e-104	86.28	RING-H2 finger protein ATL40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4DXK5	1.0e-104	86.28	RING-H2 finger protein ATL40-like OS=Cucumis melo OX=3656 GN=LOC103491347 PE=4 S...	[more]
A0A0A0KJL6	3.4e-100	82.10	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G420520 P...	[more]
A0A6J1ESR2	1.2e-89	82.27	RING-H2 finger protein ATL40-like OS=Cucurbita moschata OX=3662 GN=LOC111437227 ...	[more]
A0A6J1JP92	1.4e-85	80.09	E3 ubiquitin-protein ligase ATL41-like OS=Cucurbita maxima OX=3661 GN=LOC1114862...	[more]

BLAST of Lsi11G016830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877602.1	1.8e-111	92.11	RING-H2 finger protein ATL40-like [Benincasa hispida]	[more]
XP_016900708.1	2.1e-104	86.28	PREDICTED: RING-H2 finger protein ATL40-like [Cucumis melo] >KAA0061641.1 RING-H...	[more]
XP_031744153.1	6.9e-100	82.10	RING-H2 finger protein ATL40 [Cucumis sativus] >KGN47956.1 hypothetical protein ...	[more]
XP_022930874.1	2.5e-89	82.27	RING-H2 finger protein ATL40-like [Cucurbita moschata]	[more]
KAG6589265.1	1.6e-88	81.82	E3 ubiquitin-protein ligase ATL41, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lsi11G016830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42360.1	2.0e-36	43.36	RING/U-box superfamily protein	[more]
AT2G42350.1	1.7e-35	43.33	RING/U-box superfamily protein	[more]
AT3G16720.1	8.9e-29	38.21	TOXICOS EN LEVADURA 2	[more]
AT2G47560.1	2.7e-25	38.10	RING/U-box superfamily protein	[more]
AT3G62690.1	3.5e-25	39.55	AtL5	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 120..161 e-value: 7.3E-8 score: 42.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 119..162 e-value: 8.1E-15 score: 54.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 120..162 score: 13.005633
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 95..168 e-value: 1.3E-21 score: 77.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..226
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..195
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 20..175
None	No IPR available	PANTHER	PTHR14155:SF558	RING-H2 FINGER PROTEIN ATL40-LIKE	coord: 20..175
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 119..162 e-value: 3.18007E-18 score: 73.1131
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 98..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G016830.1	Lsi11G016830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane