Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGAAGCGTGTGGTTGCGAAGAAGGTGAATGGTTCTTCGACTATCATCAAACCACCCAAGCCAAAGGCAATGATAGAGAAGCCGAAGAAACCGAAACCAGCGCTGACGATGAAAACGACGACGTTTTCATCGACGATGGAAACTACTCCGCCGTCAGCGATCCAGTTTAAAGATAATGATCGAGTGAGTATGATGAAGCGTAGATTCGCGAGTATAATCTTGAAAGCACAGCAACAACTTTCTCAAACTGAAAGACTAGGACTAAAGACGACCTACATTGTGGAGAAACTTCCGACTCCGACTCCGACTCAAGAACTGAGATCAGAAGCCACCCGAAAGGTTTTGTGGCGGAAGAAGAAACCCCCCACTCCGACTCCGATTCCGACTCCGACTCTGACTAGAAGTACTGAAGAACTGAGAAAAGCGGCTCGAAAAGCTTTGGAGGAGTTGGAGCAAAGCGTTGAGGTTGAAGACAGCCACAAATCGGTGAAGGAATTGGAGAAGCTGTGTGGTTGGCCGATTCCGTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGAATTATTAG mRNA sequence
ATGACGAAGCGTGTGGTTGCGAAGAAGGTGAATGGTTCTTCGACTATCATCAAACCACCCAAGCCAAAGGCAATGATAGAGAAGCCGAAGAAACCGAAACCAGCGCTGACGATGAAAACGACGACGTTTTCATCGACGATGGAAACTACTCCGCCGTCAGCGATCCAGTTTAAAGATAATGATCGAGTGAGTATGATGAAGCGTAGATTCGCGAGTATAATCTTGAAAGCACAGCAACAACTTTCTCAAACTGAAAGACTAGGACTAAAGACGACCTACATTGTGGAGAAACTTCCGACTCCGACTCCGACTCAAGAACTGAGATCAGAAGCCACCCGAAAGGTTTTGTGGCGGAAGAAGAAACCCCCCACTCCGACTCCGATTCCGACTCCGACTCTGACTAGAAGTACTGAAGAACTGAGAAAAGCGGCTCGAAAAGCTTTGGAGGAGTTGGAGCAAAGCGTTGAGGTTGAAGACAGCCACAAATCGGTGAAGGAATTGGAGAAGCTGTGTGGTTGGCCGATTCCGTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGAATTATTAG Coding sequence (CDS)
ATGACGAAGCGTGTGGTTGCGAAGAAGGTGAATGGTTCTTCGACTATCATCAAACCACCCAAGCCAAAGGCAATGATAGAGAAGCCGAAGAAACCGAAACCAGCGCTGACGATGAAAACGACGACGTTTTCATCGACGATGGAAACTACTCCGCCGTCAGCGATCCAGTTTAAAGATAATGATCGAGTGAGTATGATGAAGCGTAGATTCGCGAGTATAATCTTGAAAGCACAGCAACAACTTTCTCAAACTGAAAGACTAGGACTAAAGACGACCTACATTGTGGAGAAACTTCCGACTCCGACTCCGACTCAAGAACTGAGATCAGAAGCCACCCGAAAGGTTTTGTGGCGGAAGAAGAAACCCCCCACTCCGACTCCGATTCCGACTCCGACTCTGACTAGAAGTACTGAAGAACTGAGAAAAGCGGCTCGAAAAGCTTTGGAGGAGTTGGAGCAAAGCGTTGAGGTTGAAGACAGCCACAAATCGGTGAAGGAATTGGAGAAGCTGTGTGGTTGGCCGATTCCGTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGAATTATTAG Protein sequence
MTKRVVAKKVNGSSTIIKPPKPKAMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKDNDRVSMMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTPTPTQELRSEATRKVLWRKKKPPTPTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFKNRMEYYGLYLKNY
Homology
BLAST of Lsi11G016580 vs. ExPASy TrEMBL
Match:
A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1)
HSP 1 Score: 186.8 bits (473), Expect = 8.5e-44
Identity = 121/213 (56.81%), Postives = 142/213 (66.67%), Query Frame = 0
Query: 10 VNGSSTIIKPPKPK-AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKD--NDRVSMM 69 V GSST IKP K K I KPKK KP + TM TTP +AI++ D N+RVSM+ Sbjct: 2 VCGSSTSIKPLKAKVTTIVKPKKAKP---------TPTMGTTPLTAIRYNDNHNNRVSML 61 Query: 70 KRRFASIILKAQQQLSQTERLGLKTTYIVEKLP-----TPTPTQELRSEATRKVLWRKKK 129 KRRFA ILKAQQQLS+ ER+ + +K P TPT + R EATR+ LWRKK+ Sbjct: 62 KRRFAGTILKAQQQLSERERI---MCNVEKKQPPTLASTPTTMMDERREATREALWRKKE 121 Query: 130 PPT-------------------PTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHK 189 P T PTPIP+ STEE+RKAAR+ALEELE+SV++EDSHK Sbjct: 122 PTTTPTKNSNEELRKVVQRAFSPTPIPS-----STEEIRKAARRALEELERSVDIEDSHK 181 Query: 190 SVKELEKLCGWPIPYVGGFKNRMEYYGLYLKNY 196 SVK+LE+LCGWPIPYVGGFKNRMEYYGLYLKNY Sbjct: 182 SVKDLERLCGWPIPYVGGFKNRMEYYGLYLKNY 197
BLAST of Lsi11G016580 vs. ExPASy TrEMBL
Match:
A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 4.9e-39
Identity = 120/223 (53.81%), Postives = 143/223 (64.13%), Query Frame = 0
Query: 8 KKVNGSSTIIKPPKPK--AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKDND-RVS 67 + V SST IKP K K ++++PKK KP + TMETTP +AI F D RVS Sbjct: 6 RMVCNSSTSIKPLKVKVTTIMKQPKKAKP---------TPTMETTPLTAITFDDKHYRVS 65 Query: 68 MMKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTP--TPTQELRSEATRKVLWRKKKP 127 M+K RFAS ILKAQQQLS+++R K + +K PTP TP +E R EATR+ WR KKP Sbjct: 66 MLKSRFASTILKAQQQLSESKR---KVCNVEKKPPTPALTPMEE-RREATREASWRNKKP 125 Query: 128 -------PTPTPI-----------------------PTPTLTRSTEELRKAARKALEELE 187 T TP PTP LT STEE+R+AAR+ALE+LE Sbjct: 126 TATATATATTTPTTNSNEEPTREVVQRALWRKMKLPPTPILT-STEEIRRAARQALEDLE 185 Query: 188 QSVEVEDSHKSVKELEKLCGWPIPYVGGFKNRMEYYGLYLKNY 196 +SV+VEDSHKSVK+LE+LCGWPIP VGGFKNRMEYYGLYLKNY Sbjct: 186 RSVDVEDSHKSVKDLERLCGWPIPSVGGFKNRMEYYGLYLKNY 214
BLAST of Lsi11G016580 vs. NCBI nr
Match:
KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa])
HSP 1 Score: 186.8 bits (473), Expect = 1.8e-43
Identity = 121/213 (56.81%), Postives = 142/213 (66.67%), Query Frame = 0
Query: 10 VNGSSTIIKPPKPK-AMIEKPKKPKPALTMKTTTFSSTMETTPPSAIQFKD--NDRVSMM 69 V GSST IKP K K I KPKK KP + TM TTP +AI++ D N+RVSM+ Sbjct: 2 VCGSSTSIKPLKAKVTTIVKPKKAKP---------TPTMGTTPLTAIRYNDNHNNRVSML 61 Query: 70 KRRFASIILKAQQQLSQTERLGLKTTYIVEKLP-----TPTPTQELRSEATRKVLWRKKK 129 KRRFA ILKAQQQLS+ ER+ + +K P TPT + R EATR+ LWRKK+ Sbjct: 62 KRRFAGTILKAQQQLSERERI---MCNVEKKQPPTLASTPTTMMDERREATREALWRKKE 121 Query: 130 PPT-------------------PTPIPTPTLTRSTEELRKAARKALEELEQSVEVEDSHK 189 P T PTPIP+ STEE+RKAAR+ALEELE+SV++EDSHK Sbjct: 122 PTTTPTKNSNEELRKVVQRAFSPTPIPS-----STEEIRKAARRALEELERSVDIEDSHK 181 Query: 190 SVKELEKLCGWPIPYVGGFKNRMEYYGLYLKNY 196 SVK+LE+LCGWPIPYVGGFKNRMEYYGLYLKNY Sbjct: 182 SVKDLERLCGWPIPYVGGFKNRMEYYGLYLKNY 197
BLAST of Lsi11G016580 vs. NCBI nr
Match:
KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 89.7 bits (221), Expect = 2.9e-14
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 0
Query: 8 KKVNGSSTIIKPPKPKAMIEKP--KKPKPALTMKTTTFSSTMETTPPSAIQFKDNDRVSM 67 K V S ++ K+ +KP P +LT T +T+ P + +++R + Sbjct: 2 KGVPKHSLSVRASSLKSKAKKPSLSLPPTSLTKAKTLAPTTIVPRPTPSSSSGEDNRAKI 61 Query: 68 MKRRFASIILKAQQQLSQTERLGLKTTYIVEKLPTPTPTQELRSEATRKVLWRKKKPPTP 127 +K++FA I KAQ+ LS+ K +E + + V R+ PP Sbjct: 62 LKKKFAGTIWKAQRHLSKN-----------RKKVRSEKRREADGKGSEAVDDRRVVPPLA 121 Query: 128 TPIPTPTLTR---STEELRKAARKALEELEQSVEVEDSHKSVKELEKLCGWPIPYVGGFK 187 + +T EE+R AAR+ LEE+E+ V V+DSH S++E E+LCG+PIPYVGGF Sbjct: 122 PSLEDDEITMLKVRREEMRAAARRDLEEVERRVVVDDSHASLREYERLCGFPIPYVGGFL 181 Query: 188 NRMEYYGLYLKN 195 NRM YYGLYLK+ Sbjct: 182 NRMHYYGLYLKD 182
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5D3DC97 8.5e-44 56.81 Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KGL2 4.9e-39 53.81 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1 [more]
Match Name E-value Identity Description
KAA0061663.1 1.8e-43 56.81 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran... [more]
KAG6571342.1 2.9e-14 35.42 hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
A T G A C G A A G C G T G T G G T T G C G A A G A A G G T G A A T G G T T C T T C G A C T A T C A T C A A A C C A C C C A A G C C A A A G G C A A T G A T A G A G A A G C C G A A G A A A C C G A A A C C A G C G C T G A C G A T G A A A A C G A C G A C G T T T T C A T C G A C G A T G G A A A C T A C T C C G C C G T C A G C G A T C C A G T T T A A A G A T A A T G A T C G A G T G A G T A T G A T G A A G C G T A G A T T C G C G A G T A T A A T C T T G A A A G C A C A G C A A C A A C T T T C T C A A A C T G A A A G A C T A G G A C T A A A G A C G A C C T A C A T T G T G G A G A A A C T T C C G A C T C C G A C T C C G A C T C A A G A A C T G A G A T C A G A A G C C A C C C G A A A G G T T T T G T G G C G G A A G A A G A A A C C C C C C A C T C C G A C T C C G A T T C C G A C T C C G A C T C T G A C T A G A A G T A C T G A A G A A C T G A G A A A A G C G G C T C G A A A A G C T T T G G A G G A G T T G G A G C A A A G C G T T G A G G T T G A A G A C A G C C A C A A A T C G G T G A A G G A A T T G G A G A A G C T G T G T G G T T G G C C G A T T C C G T A C G T T G G T G G T T T C A A G A A C A G G A T G G A A T A T T A T G G T T T A T A T T T G A A G A A T T A T T A G 50 100 150 200 250 300 350 400 450 500 550 Score = Score = Sequence Coil mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 134..154
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..36
Relationships
The following mRNA feature(s) are a part of this gene: