Lsi11G016560 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G016560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr11: 24865678 .. 24867343 (+)
RNA-Seq Expression	Lsi11G016560
Synteny	Lsi11G016560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGCAGCATGGGACCCGCCCGGGCGAACCCTCGCGGTCGGGTTCATGATTCTCCAAAACCTTTGCCACTGAGCCGGCACTCTACGCTACGTGACCATCCACCGAACCACGAACGACCCGACGGCCCCACCCGTACCGGCGCGCACTTCAATTATAATAAAGAAAATAAAGTAAAGTAAGTTGATTTTATATTATTAATTTATTTTTCCTTTTAGAAATGGCCTTTGACATCGTTCGCCATTCACCAGCCACATTTATCATAGAAAACAGACGTTCTGATTTGAGATTTCAACCCCTGCAATCGCCATTTTCATGACCTTTAGATCAGATCTCTCCTCATTCATCTTCCTCTTCCTGGTTCTTGCATTCCATCTGCATATTCCTGCTCATTTCTTCAATTCGTTCCTCAGATTATTCTCAGGTCAGTTGATTCGGTATGTCGAGTATTGGAGAATCCCGTCGTACTTTGAAATGCTTTTACGCTTGCTTGTTTATGCACGTCGATGCTTGTTCTATGTAGCTGATTTTTAATTATTTGATTGTTTATTTACGCATTATTGTTACTCGGATTGAGCTCGAGCTCATCCTTGTCGACGCTTCATCTTGTTGATTATTGTTCGTTCCTTTAATTAGTTGCGTGTCTATTTGATCAATTTGAAGTAGCGAGTCTCCGCGACAGTTTTTTAGAACTATGCTATCTTGTTTCCCTCCATGTGTGCACATGTTGCTGTTACGGACGCGCAGTCTTCACGCGCCTCATTCATAATAGCTCTTAAACGACGTCACTTGTTGTGAGTCGTGATAGCAGCTGATGCCAAAGCTTGATATTATGTGTGACTGACTGCCTTAGTTTAGTTTTTGCTGCTTCTCTAAAGAATTATTGGTGTCGGGAAGAAAATTATAAAGAATCATAGGATCTGTGCTGAATTGAAGGAAGTGATCGCGCCCATGACTTATTAGTGCTTGCTGGCTATAATTTGTAGCCGAATAGTTCATAAATTATGAATTTCCAATACTTTTTTCTTTTCCAAATTTTTATTTTTATTTTTTATGATTGGGAAGTTCCACGGAAGTTGGGTTCTATGTGTATAAATATTTAAATTTTGTTTGGGTTAAGAAACAATTGTATTGAAAGATAGCAAGGTTATATTAGAGTGACGACAAGGCATCGCAAAGAAGATCAAAGAGAGGTTCTTTAATTTTGGGGGAGGGGTAGTTACAAATCTCTGAAAGAGGGCCTGTCTTGGCATTATCATTATGAAATCAAGTCTGCACGTCTGTATGACTGTCCAATTTATATGTTTTGTACTCTGTATACTGATTCAAGTTTTGTCCCGACCCAGTTTATCTTTATTTTTAATTCAACTGCTAATTGAATTTCACACGAAGTTTACAACTTGCTATGATTTGTCACAATGGATAAAGCTCCTGCTTTCTGTTTACTCATTTGCATCTGTCAGTGATTGTGTTGGAGAACATAGATGGTTCTATCTTAGTAGATAAAAGGAGATGATTGGGAATTCTTTGGGTACAGAAAAGCTTATACACGCGAGGGTTGAATATATTGAGACTGGAAGTCAAGAAGTAGGTGGTTGTCATAGAGAACCATTTTTTCCAAGATGGTGTGACATAGAGGTACTGTCCCAGTGGACACTCCACTAA

mRNA sequence

ATGGTCAGCAGCATGGGACCCGCCCGGGCGAACCCTCGCGGTCGGGTTCATGATTCTCCAAAACCTTTGCCACTGAGCCGGCACTCTACGCTACGTGACCATCCACCGAACCACGAACGACCCGACGGCCCCACCCGTACCGGCGCGCACTTCAATTATAATAAAGAAAATAAAGTAAAATCAGATCTCTCCTCATTCATCTTCCTCTTCCTGGTTCTTGCATTCCATCTGCATATTCCTGCTCATTTCTTCAATTCGTTCCTCAGATTATTCTCAGAAAAGCTTATACACGCGAGGGTTGAATATATTGAGACTGGAAGTCAAGAAGTAGGTGGTTGTCATAGAGAACCATTTTTTCCAAGATGGTGTGACATAGAGGTACTGTCCCAGTGGACACTCCACTAA

Coding sequence (CDS)

ATGGTCAGCAGCATGGGACCCGCCCGGGCGAACCCTCGCGGTCGGGTTCATGATTCTCCAAAACCTTTGCCACTGAGCCGGCACTCTACGCTACGTGACCATCCACCGAACCACGAACGACCCGACGGCCCCACCCGTACCGGCGCGCACTTCAATTATAATAAAGAAAATAAAGTAAAATCAGATCTCTCCTCATTCATCTTCCTCTTCCTGGTTCTTGCATTCCATCTGCATATTCCTGCTCATTTCTTCAATTCGTTCCTCAGATTATTCTCAGAAAAGCTTATACACGCGAGGGTTGAATATATTGAGACTGGAAGTCAAGAAGTAGGTGGTTGTCATAGAGAACCATTTTTTCCAAGATGGTGTGACATAGAGGTACTGTCCCAGTGGACACTCCACTAA

Protein sequence

MVSSMGPARANPRGRVHDSPKPLPLSRHSTLRDHPPNHERPDGPTRTGAHFNYNKENKVKSDLSSFIFLFLVLAFHLHIPAHFFNSFLRLFSEKLIHARVEYIETGSQEVGGCHREPFFPRWCDIEVLSQWTLH

Homology

[Close]

BLAST of Lsi11G016560 vs. ExPASy TrEMBL
Match: A0A0A0KJP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421750 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.6e-11
Identity = 67/181 (37.02%), Postives = 75/181 (41.44%), Query Frame = 0


Query: 1   MVSSMGPARANPRGRVHDSPKPLPLSRHSTLRDHPPNHERPDGPTRTGAHF------NYN 60
           MVS  GP RANP      S   L +   + LR  PPNHE P GPT+             N
Sbjct: 1   MVSKAGPTRANPSW----SGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSN 60

Query: 61  KENKVKSDL--------------------SSFIFLFLVLAFHLHIPAHFFNSFLRLF--- 120
            EN+ +SDL                     SF F      FHLHI +HF N FLR F   
Sbjct: 61  IENR-RSDLRFQPLQSPFSRPLDLIHPHPPSFFF-----EFHLHILSHFLNYFLRFFFSG 120

Query: 121 ------------------------SEKLIHARVEYIETGSQEVGGCHREPFFPRWCDIEV 129
                                    +   HARV+ IE  SQEV G HR PFF RWCDIEV
Sbjct: 121 HLFRLTHYLSLVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEV 171

[Close]

BLAST of Lsi11G016560 vs. NCBI nr
Match: KGN47981.1 (hypothetical protein Csa_004084 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 67/181 (37.02%), Postives = 75/181 (41.44%), Query Frame = 0


Query: 1   MVSSMGPARANPRGRVHDSPKPLPLSRHSTLRDHPPNHERPDGPTRTGAHF------NYN 60
           MVS  GP RANP      S   L +   + LR  PPNHE P GPT+             N
Sbjct: 1   MVSKAGPTRANPSW----SGSWLCVPFAAGLRYRPPNHEPPSGPTQMAFDIVRHSPPTSN 60

Query: 61  KENKVKSDL--------------------SSFIFLFLVLAFHLHIPAHFFNSFLRLF--- 120
            EN+ +SDL                     SF F      FHLHI +HF N FLR F   
Sbjct: 61  IENR-RSDLRFQPLQSPFSRPLDLIHPHPPSFFF-----EFHLHILSHFLNYFLRFFFSG 120

Query: 121 ------------------------SEKLIHARVEYIETGSQEVGGCHREPFFPRWCDIEV 129
                                    +   HARV+ IE  SQEV G HR PFF RWCDIEV
Sbjct: 121 HLFRLTHYLSLVCAASLKNYWRRDGKNHKHARVDSIEPVSQEVSGFHRVPFFRRWCDIEV 171

The following BLAST results are available for this feature:

BLAST of Lsi11G016560 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G016560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJP7	8.6e-11	37.02	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421750 PE=4 SV=1	[more]

BLAST of Lsi11G016560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47981.1	1.8e-10	37.02	hypothetical protein Csa_004084 [Cucumis sativus]	[more]

BLAST of Lsi11G016560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G016560.1	Lsi11G016560.1	mRNA