Lsi11G016220 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G016220
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	KRR1 small subunit processome component
Location	chr11: 24546463 .. 24551748 (-)
RNA-Seq Expression	Lsi11G016220
Synteny	Lsi11G016220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTACAAAATCCTCATATCTTTCCTTTACTCCGTACGCGCGTCTTCTTTTCTCCTCAGAGTTTTCCTTCTCTGTAAACCCTATTTCACGTTCAAGTGTCCCTCCCTCCCATTACCAGCTATGCACACTGCCGCCGCCGCCCGCCGCTCCTGCTCGACGTAGTCTCGTGGCTGCCGCCCCTCCTGCACTCCCAACTGCTGCAGTCTCTGCCTTTCGACGAACTCGCCGCCGCTCCCTCCCTCTCGCACTCTCTCGCCTCTTGAAGCAATCGGAGTTTCTCGCACTCTCTCTCCGTCAGCCCCTGAACCGCGCCGTTCGCGAGATTGGCCCGTCGACCAGATTCGCCCTAAGGTTTTCAAATTTTCTTTTTTGTTTTTTTTAATTTGTTTTTTCGATTTATTTCCTTCACCGACGTAGAAGAAAATAAAAAAAAGCATATTGGTTGTCGATTTTTTATTCAATAAACGTTCAATAATTCTAAATGAAACCATATAACTAAAAAAGCATCAGAGTTTGTTTGAAGGTATTAGTTTGAATAATGAACATAGAAGAAACTATGATACATATGAACTTAGGGAAGTGCGTAACTTTTGGTTGTAGTAACCCTAAATTTTTAGAATCAATTAGACACTTTATTCGAATTGCGTTCTAAAACATAACCTAGAAGTTAAAACTTCTTGAAATGCAAAAGATTAATGTAAAAAAAGTGATAATCAGATAGGAAGTTCATTAAAATTAAAACTTCAAGATTTTAATGGGATTGATTTCAAATTCCTTCGCATTTGGAATCAAATTGATTTGAGTTCACACAAATTAATTTTTTTTTTTGTTTAGATACCCACAAAAACGAAAAGAAAGTATGAGATTTTACATTTTTTTTTCTCTTATAATCTTGGAAGAGAATTGTATTAATAATTATAAGATATTTAATAAAAAATATCACTCAGTATATCATTTAATAAAAAAATTAAAACTTAGAAATTAATTTTATTGTTATTCTAAAAATATCTTTGGATATCTAGAAATTGAAGGAAATGGTTTTTAACTTAATAAATTTTAATAGATGAAAATGAATTGAAAATCTTTGGAACACAATGAATTTAAGAATTCTAATAAAAATCTAAATCAGTAAACACAATAAAACTTATTGTTAGGATATTTAGAAGAAGTACAACTATGTTTGCAATTATACTCTTATAGTTATTCTTTAAGAAAAAAAAAACCAATTACTCATCATCTTCTCTTCCCCAAAATTTATGATATATGATAAATTTATGTCTATATTAAATAAATAAATAAAAAACCCTAAACTACAGAAACCTTTCTCTGTTTCGGCATCGACTACAGAATGGTTTTCAATCCTCAGTCACGCCATTACAGTTATTTTCTTTCTCCTTCTCTTGTCTGACTCTCTACTGCAATCTCTTCATCTTCCAGATTTTTCATCTAGCTTTAGCTCCTTCCCATTGCTTCTCACGGTTTTCCTGAATAATCCCACACGGTGATGGAAGACATAGAGCAACAGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTTTGATCCCTCTTGGAATGAAGGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGGTAAGGAATTTTATGTTTTTACTTTCCAATTTTACTCTCTTGCTATTACGGAGGATTAGATTGGAATAAATGAATGAATTAGAGTGTGGGTTTCTTTGAACTTGCTTACATAGTACTTCGACATCTCAATTGTCTTTAGATTAATAATTTGGTGCATTGTATTAAATTTATGTCTAGTTTGCGTACTAAATTGTGAAACAGTTTGTAGTAGTCCTACTGAAACGATTTCGAGTTACTGTGAACTTTGATTTTGTTTCAGCTGTTTTGTTTCGCCAAGTAGTTTGGCTGAAAAGGAATTATTGTTTCATGTTTAAATGTTTGTACTGTAGGCCGATATGCTTTATTTTGTGTTCTGTCAATCGGTTCTATGTCTACATGGAGGGTAGTATTGCAGTCGAGATGGTTCTGAAAGGATTTGAGGAAGCCAAAAATAACTTTTTCTTTCTAGTGCTGCGACCTATTTAGTCTATGTTTTTACTGAAAATGGTTAGGTAGCAGTAGAATAGCAAGGTTTTGTTTTCTAACTTTATGAATTTGGTAATCTTTATTGGTGGAAAACGTTCAGTACATATTGTTTTTTCAATATGCTTGTTTTTATCTTCACTTAAAGATATTTCTGCTATACAGTTGGATTGACTGTGCGCAATAATCAGATTCCAATTCTTAAAGATTTTGATTCTGCGATTTTCAGAAAAATATTTGCGAGACACATGGCCAGTTGTGAAGTCTGCGCTGAAAGAGTTTGGTGTTGTTTGTGAACTGAATCTGGTAAGAGTCCATAAACTCCAGAAAGAAAAATGAAAGAGTTTATAACCCTAATGAAGGAATGTCTTTGATTCTGTAGTTTGAGTAGTTTTGAAACCAGTTGTAATTCTCATTGCATGTGTTTTAATCTCCTACTGTTGATCAGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGATCTGATCAAGCTTTTGTCAAGAAGCGTTCCTGCTCCTCAGGTAAAACAATGAGTTGATTTATTTTATGTTATTTTTCTTTTGATTTGGAAGTTTGAATATTTCTTTCACCGGTCCTGTTGATTGGTATCTTGAATTGTGTTTTTTGACCATGGTTTGTGTGTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGTCAGTGTCTTTTACTCTACTTATTTTATTACAGACTGATTTTATATTCTTTTTCTCTTTAGGCATTTGACTAAGAAGTTTGCATAGTTGATAGTTGCCAGCCTTTAATCTCCTTGCACATGCTCTAAGGTCTGAAGTTCATCCTAAATTCAAAAAGTCTATATCTATGGCAACCTACATAGTTAGCCTTTAATCTCCTTGAGCACGCTCTAAGGTCTGAAGTTCATCCTAAATTCAAGAAGTCCATATCTAGGGCAATCTACAGCAAAAGTCTACATGGCTCACTAATTACTGGAAATTGGAGACATTCGGATATAAATTGAAATGCAGTGTTTTATTCTTTTGACTTGAAGTTGAAAATTAGCCTGTTATTTTAGAGACTAAGTTTCAGGGTTGTGTGTGTGTGTCCCTAATCGTAATGTTGGCAATCGTGCATTATGGCACATAATAGTTGCTTAGATGAAGGACTACCACTTTCCATGCCAATTTTCAATTCTCTGCTCTATGTGAACTTTGAAATTTGACTTTGGCCCGACCTTGATTATGATGCAGGAACGATTTGTTAAAAGAAGACGGCTTCTTGTGGGCCCAAATTCATCAACTTTAAAGGTTCATATAGCTTAGTTGATTGCTTTCCAAGATTACTAAGTTCCTCCTACTTTGATAAAGATATCTTAATTTAGCTTTCTTAGAGAGGGGCAATTGTATTTATCTAAGTCTATGCTCTATTTCTTCTCTCTTATCTTTTAATTGTTATTCTAGCACAGGCGCTTGAAATATTGACAGGATGCTATATTCTTGTTCAAGTACGTATATTTTCTTTTGGCTACTTGTTTATATTTTTCATCTCTTTCAGCCTTTCCTCTTCTGTAGCGTCAATCTTGTTCTTGTTACTGACAGGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGATGAATAAAATGCATCCTGTATATAATATTAAGGTTTCTAATTTCTGTATATCACTTTATGTTCTCCTCGATAGCTCTCTACGTAACCTGGTATCTCTTGCAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGTTTCTTCCCAAATTCAAGAAGTATGCCATTAAGACGTGTACTTGTTTGCTGATTTTCTTATGCTAGAATCATGTATTTATGTTTTACACAAGCGTCCTTTTCTCAGGAAAACTGTTAAACAAAAGAAGGTTAAGAGTAAACAGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGGTGCAAATAGCTGCCTTTCACTTTCTGGAGGCCCAATTTGTCTATATTTATATTTCAAAAAGGAATTATGAAAATAGGACGACAATATAAGACATAATAGTTATGATGGTCAAAAATTGTAAAAAAGGAACAGGCCACAACATATTAGTGCCATATTTAATAAAGATTAATTATTCCAAATTTAGGAAGTGCTGAAATGTCTTAGAAACATATTATTTTATTGTCATTGTGACAATTTTATAGGTGTTAAACGTAGACATGTTTTGCATTCTTATTTTTTTTCTCAATGCATTCATTTCAATAAGATTTATTGACTCGATGTATTTTGCAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGTATACATTGCTCCAGCTCGTTGATTCAGCGTATCCAATTTACTGAACTTTTTTTTTTAATTCTTTTCACTACTATACGTGCTTTTAGTGATAATTGTTTTACATCTTTCAGGAGCCACCGAAGCAGGATACGAAACTTGATGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGTATGATATTTTGTGTGTGGGGGGCTATATGTAATAATAACCACCGTGGATTCTCCCAGAAGATTTTTCAACTGGAAATGGTCCATTTTGTTTGACAAATTTGTTGCAACTTATGAACTTTGTTGCTTTACAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAATCCTGAAGCTTACATTGCATCATCCAGCGATAAGCCCCATTTCAAGAAGAGATCCAAGACATCGTCGTAGAAGTTGGTAAGTATATTGTAAGGGGAGCTTCCACCCTTGTGTATGAAATTACCAAAGCTTCTAGTTTTTTGTATGACTTCATTTTTTTGTTACATGTCGGATTAGAATCAGGGTTGTTTTAATGAGAAAAGCATGAGTCTTCTTCTTC

mRNA sequence

AATTTTTACAAAATCCTCATATCTTTCCTTTACTCCGTACGCGCGTCTTCTTTTCTCCTCAGAGTTTTCCTTCTCTGTAAACCCTATTTCACGTTCAAGTGTCCCTCCCTCCCATTACCAGCTATGCACACTGCCGCCGCCGCCCGCCGCTCCTGCTCGACGTAGTCTCGTGGCTGCCGCCCCTCCTGCACTCCCAACTGCTGCAGTCTCTGCCTTTCGACGAACTCGCCGCCGCTCCCTCCCTCTCGCACTCTCTCGCCTCTTGAAGCAATCGGAGTTTCTCGCACTCTCTCTCCGTCAGCCCCTGAACCGCGCCGTTCGCGAGATTGGCCCGTCGACCAGATTCGCCCTAAGATTTTTCATCTAGCTTTAGCTCCTTCCCATTGCTTCTCACGGTTTTCCTGAATAATCCCACACGGTGATGGAAGACATAGAGCAACAGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTTTGATCCCTCTTGGAATGAAGGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGAAAAATATTTGCGAGACACATGGCCAGTTGTGAAGTCTGCGCTGAAAGAGTTTGGTGTTGTTTGTGAACTGAATCTGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGATCTGATCAAGCTTTTGTCAAGAAGCGTTCCTGCTCCTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGCGCTTGAAATATTGACAGGATGCTATATTCTTGTTCAAGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGATGAATAAAATGCATCCTGTATATAATATTAAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGAAAACTGTTAAACAAAAGAAGGTTAAGAGTAAACAGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCACCGAAGCAGGATACGAAACTTGATGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAATCCTGAAGCTTACATTGCATCATCCAGCGATAAGCCCCATTTCAAGAAGAGATCCAAGACATCGTCGTAGAAGTTGGTAAGTATATTGTAAGGGGAGCTTCCACCCTTGTGTATGAAATTACCAAAGCTTCTAGTTTTTTGTATGACTTCATTTTTTTGTTACATGTCGGATTAGAATCAGGGTTGTTTTAATGAGAAAAGCATGAGTCTTCTTCTTC

Coding sequence (CDS)

ATGGAAGACATAGAGCAACAGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTTTGATCCCTCTTGGAATGAAGGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGAAAAATATTTGCGAGACACATGGCCAGTTGTGAAGTCTGCGCTGAAAGAGTTTGGTGTTGTTTGTGAACTGAATCTGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGATCTGATCAAGCTTTTGTCAAGAAGCGTTCCTGCTCCTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGCGCTTGAAATATTGACAGGATGCTATATTCTTGTTCAAGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGATGAATAAAATGCATCCTGTATATAATATTAAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGAAAACTGTTAAACAAAAGAAGGTTAAGAGTAAACAGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCACCGAAGCAGGATACGAAACTTGATGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAATCCTGAAGCTTACATTGCATCATCCAGCGATAAGCCCCATTTCAAGAAGAGATCCAAGACATCGTCGTAG

Protein sequence

MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRKTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKRSKTSS

Homology

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BLAST of Lsi11G016220 vs. ExPASy Swiss-Prot
Match: O74777 (KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mis3 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.6e-83
Identity = 168/314 (53.50%), Postives = 219/314 (69.75%), Query Frame = 0


Query: 9   NKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTW 68
           NK K   ++ + KPWD D +ID WK+E F    ++   LE SSF+TLFP YREKYLR+ W
Sbjct: 15  NKNK---RYRRDKPWDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 74

Query: 69  PVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKIL 128
           P V  AL +FG+ C L+L+EGSMTV TTRKT DPY I+ ARDLIKLL+RSVP PQA+KI+
Sbjct: 75  PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 134

Query: 129 DDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSF 188
            D + CDIIKIGN++R                    KALE+LT CYILVQG TVA MG +
Sbjct: 135 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 194

Query: 189 KGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWD--------RKTVKQK 248
           KGLK+VRRIVE+CM N +HP+Y+IK LM+K+ELA DP LANE+WD        R   ++K
Sbjct: 195 KGLKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRK 254

Query: 249 KVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRK 296
             K ++ K YTPFPP Q PS++D+++E+GEYFL  ++K  KK  +K+E+Q EK  E +++
Sbjct: 255 PAKIRETKEYTPFPPAQPPSKLDLEIESGEYFLKKEEKERKKRAEKKEQQKEKKKEKEKE 314

[Close]

BLAST of Lsi11G016220 vs. ExPASy Swiss-Prot
Match: B3LU25 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) OX=285006 GN=KRR1 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.2e-78
Identity = 161/306 (52.61%), Postives = 208/306 (67.97%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQV 196
           D+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR----------KTVKQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W R             K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA 292
            +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Sbjct: 245 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 304

[Close]

BLAST of Lsi11G016220 vs. ExPASy Swiss-Prot
Match: B5VEQ2 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) OX=545124 GN=KRR1 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.2e-78
Identity = 161/306 (52.61%), Postives = 208/306 (67.97%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQV 196
           D+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR----------KTVKQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W R             K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA 292
            +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Sbjct: 245 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 304

[Close]

BLAST of Lsi11G016220 vs. ExPASy Swiss-Prot
Match: C8Z430 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) OX=643680 GN=KRR1 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.2e-78
Identity = 161/306 (52.61%), Postives = 208/306 (67.97%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQV 196
           D+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR----------KTVKQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W R             K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA 292
            +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Sbjct: 245 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 304

[Close]

BLAST of Lsi11G016220 vs. ExPASy Swiss-Prot
Match: P25586 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KRR1 PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 3.2e-78
Identity = 161/306 (52.61%), Postives = 208/306 (67.97%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPVVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGSFKGLKQV 196
           D+IKIGN V                     KALE+LT CYILVQGNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR----------KTVKQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W R             K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAA 292
            +KK YTPFPP Q P ++D+++E+GEYFLS ++K  KK  +++EKQ E+  E + +R   
Sbjct: 245 VEKKVYTPFPPAQLPRKVDLEIESGEYFLSKREKQMKKLNEQKEKQMEREIERQEERAKD 304

[Close]

BLAST of Lsi11G016220 vs. ExPASy TrEMBL
Match: A0A6J1GLG6 (KRR1 small subunit processome component OS=Cucurbita moschata OX=3662 GN=LOC111455438 PE=3 SV=1)

HSP 1 Score: 635.6 bits (1638), Expect = 1.3e-178
Identity = 333/377 (88.33%), Postives = 342/377 (90.72%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFD SWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDASWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WPVVKSALKEFG+ C+LNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACDLNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNT 181
           PQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------- 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR       
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT 303

Query: 302 AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYI 353
           AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYI
Sbjct: 304 AENKRKREAAFVPPKEPPKQDTNIDGDNNDIATMAKALKEKAKALGKRKAAESINPEAYI 363

[Close]

BLAST of Lsi11G016220 vs. ExPASy TrEMBL
Match: A0A6J1HWB5 (KRR1 small subunit processome component OS=Cucurbita maxima OX=3661 GN=LOC111468435 PE=3 SV=1)

HSP 1 Score: 633.3 bits (1632), Expect = 6.2e-178
Identity = 332/377 (88.06%), Postives = 342/377 (90.72%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WPVVKSALKEFG+ CELNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACELNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNT 181
           PQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------- 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALA+ENWDR       
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALASENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT 303

Query: 302 AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYI 353
           AENKRKREA+FVPPKE PKQDTK+DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYI
Sbjct: 304 AENKRKREASFVPPKETPKQDTKIDGDNNDIATMAKALKEKAKALGKRKAAESINPEAYI 363

[Close]

BLAST of Lsi11G016220 vs. ExPASy TrEMBL
Match: A0A5D3CP78 (KRR1 small subunit processome component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00300 PE=3 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 1.8e-177
Identity = 337/379 (88.92%), Postives = 344/379 (90.77%), Query Frame = 0


Query: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60
           MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVYR
Sbjct: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVYR 60

Query: 61  EKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVP 120
           EKYLRDTWPVVKSALKEFG+V ELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVP
Sbjct: 61  EKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 120

Query: 121 APQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGN 180
           APQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGN
Sbjct: 121 APQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGN 180

Query: 181 TVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------ 240
           TVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMMKKELANDPALANENWDR      
Sbjct: 181 TVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240

Query: 241 -KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK 300
            KTVKQKKVKSK KK YTPFPPPQQPSQIDIQLETGEYFL++KKKSAKKWQDKQEKQAEK
Sbjct: 241 KKTVKQKKVKSKPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAEK 300

Query: 301 TAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEA 353
           TAENKRKREAAFVPPKE PK QDT+ DGD NDIAEMAKALKEKAKAFGKRKAAETINPEA
Sbjct: 301 TAENKRKREAAFVPPKEAPKQQDTQPDGDKNDIAEMAKALKEKAKAFGKRKAAETINPEA 360

[Close]

BLAST of Lsi11G016220 vs. ExPASy TrEMBL
Match: A0A0A0K7G6 (KRR1 small subunit processome component OS=Cucumis sativus OX=3659 GN=Csa_7G237820 PE=3 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 5.3e-177
Identity = 335/379 (88.39%), Postives = 344/379 (90.77%), Query Frame = 0


Query: 1   MEDIEQQ-QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVY 60
           MEDIEQQ QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVY
Sbjct: 1   MEDIEQQHQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVY 60

Query: 61  REKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSV 120
           REKYLRDTWPVVKSALKEFG+V ELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSV
Sbjct: 61  REKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSV 120

Query: 121 PAPQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQG 180
           PAPQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQG
Sbjct: 121 PAPQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQG 180

Query: 181 NTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR----- 240
           NTVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMM+KELANDPALANENWDR     
Sbjct: 181 NTVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLPKF 240

Query: 241 --KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAE 300
             KTVKQKKVKSK KK YTPFPPPQQPSQIDIQLETGEYFL++KKKSAKKWQDKQEKQAE
Sbjct: 241 KKKTVKQKKVKSKPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAE 300

Query: 301 KTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEA 353
           KTA+NKRKREAAFVPPKE PKQDTK DGD NDIAEMAK+LKEKAKAFGKRKAAETINPEA
Sbjct: 301 KTADNKRKREAAFVPPKEAPKQDTKPDGDKNDIAEMAKSLKEKAKAFGKRKAAETINPEA 360

[Close]

BLAST of Lsi11G016220 vs. ExPASy TrEMBL
Match: A0A1S3BGN7 (KRR1 small subunit processome component OS=Cucumis melo OX=3656 GN=LOC103489650 PE=3 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 2.6e-176
Identity = 335/379 (88.39%), Postives = 342/379 (90.24%), Query Frame = 0


Query: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60
           MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVYR
Sbjct: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVYR 60

Query: 61  EKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVP 120
           EKYLRDTWPVVKSALKEFG+V ELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVP
Sbjct: 61  EKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 120

Query: 121 APQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGN 180
           APQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGN
Sbjct: 121 APQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGN 180

Query: 181 TVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------ 240
           TVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMMKKELANDPALANENWDR      
Sbjct: 181 TVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240

Query: 241 -KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK 300
            KTVKQKKVKSK KK YTPFPPPQQPSQIDIQLETGEYFL++KKKSAKKWQDKQEKQAEK
Sbjct: 241 KKTVKQKKVKSKPKKQYTPFPPPQQPSQIDIQLETGEYFLNEKKKSAKKWQDKQEKQAEK 300

Query: 301 TAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEA 353
           TAENKRKREAAFVPP E PK QDT+ DGD NDIAEMAK LKEKAKAFGKRKAAETINPEA
Sbjct: 301 TAENKRKREAAFVPPMEAPKQQDTQPDGDKNDIAEMAKVLKEKAKAFGKRKAAETINPEA 360

[Close]

BLAST of Lsi11G016220 vs. NCBI nr
Match: XP_038888683.1 (KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888684.1 KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888685.1 KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888686.1 KRR1 small subunit processome component homolog [Benincasa hispida])

HSP 1 Score: 649.4 bits (1674), Expect = 1.7e-182
Identity = 340/378 (89.95%), Postives = 347/378 (91.80%), Query Frame = 0


Query: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60
           MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR
Sbjct: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60

Query: 61  EKYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVP 120
           EKYLR+TWPVVKSALKEFG+VCELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVP
Sbjct: 61  EKYLRETWPVVKSALKEFGIVCELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 120

Query: 121 APQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGN 180
           APQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGN
Sbjct: 121 APQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGN 180

Query: 181 TVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------ 240
           TVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMMKKELANDPALANENWDR      
Sbjct: 181 TVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240

Query: 241 -KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK 300
            KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK
Sbjct: 241 KKTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEK 300

Query: 301 TAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAY 353
           TAENKRKREAAFVPPKEPP QDT+ D DNNDI+EMAKALKEKAKAFGKRKA E INPEAY
Sbjct: 301 TAENKRKREAAFVPPKEPPMQDTEPDQDNNDISEMAKALKEKAKAFGKRKAMEAINPEAY 360

[Close]

BLAST of Lsi11G016220 vs. NCBI nr
Match: XP_023511730.1 (KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 636.3 bits (1640), Expect = 1.5e-178
Identity = 333/377 (88.33%), Postives = 342/377 (90.72%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E++EQQQNKTKHKGKHDKPKPWDEDPNIDRW VEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EELEQQQNKTKHKGKHDKPKPWDEDPNIDRWTVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WPVVKSALKEFG+ CELNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACELNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNT 181
           PQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------- 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR       
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT 303

Query: 302 AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYI 353
           AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYI
Sbjct: 304 AENKRKREAAFVPPKEPPKQDTTIDGDNNDIATMAKALKEKAKALGKRKAAESINPEAYI 363

[Close]

BLAST of Lsi11G016220 vs. NCBI nr
Match: XP_022952886.1 (KRR1 small subunit processome component homolog [Cucurbita moschata] >XP_022952887.1 KRR1 small subunit processome component homolog [Cucurbita moschata])

HSP 1 Score: 635.6 bits (1638), Expect = 2.6e-178
Identity = 333/377 (88.33%), Postives = 342/377 (90.72%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFD SWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDASWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WPVVKSALKEFG+ C+LNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACDLNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNT 181
           PQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------- 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR       
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT 303

Query: 302 AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYI 353
           AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYI
Sbjct: 304 AENKRKREAAFVPPKEPPKQDTNIDGDNNDIATMAKALKEKAKALGKRKAAESINPEAYI 363

[Close]

BLAST of Lsi11G016220 vs. NCBI nr
Match: KAG7012057.1 (mis3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 634.4 bits (1635), Expect = 5.8e-178
Identity = 333/377 (88.33%), Postives = 341/377 (90.45%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EVIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WPVVKSALKEFG+ C+LNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACDLNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNT 181
           PQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------- 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR       
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT 301
           K VKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Sbjct: 244 KIVKQKKVKSKQKKPYTPFPPPQPPSQIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT 303

Query: 302 AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYI 353
           AENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYI
Sbjct: 304 AENKRKREAAFVPPKEPPKQDTNIDGDNNDIATMAKALKEKAKALGKRKAAESINPEAYI 363

[Close]

BLAST of Lsi11G016220 vs. NCBI nr
Match: XP_022969421.1 (KRR1 small subunit processome component homolog [Cucurbita maxima] >XP_022969422.1 KRR1 small subunit processome component homolog [Cucurbita maxima])

HSP 1 Score: 633.3 bits (1632), Expect = 1.3e-177
Identity = 332/377 (88.06%), Postives = 342/377 (90.72%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WPVVKSALKEFG+ CELNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACELNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNT 181
           PQAIKILDDEMQCDIIKIGNLVRK                   KALEILTGCYILVQGNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR------- 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALA+ENWDR       
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALASENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKT 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQIDIQLETGEYFLSDKKKSAKKWQ+KQEKQAEKT
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKT 303

Query: 302 AENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYI 353
           AENKRKREA+FVPPKE PKQDTK+DGDNNDIA MAKALKEKAKA GKRKAAE+INPEAYI
Sbjct: 304 AENKRKREASFVPPKETPKQDTKIDGDNNDIATMAKALKEKAKALGKRKAAESINPEAYI 363

[Close]

BLAST of Lsi11G016220 vs. TAIR 10
Match: AT5G08420.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 466.1 bits (1198), Expect = 2.5e-131
Identity = 248/373 (66.49%), Postives = 291/373 (78.02%), Query Frame = 0


Query: 8   QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDT 67
           + + K KGKH+KPKPWD+DPNIDRW +EKFDP+WN  GM E S+FSTLFP YREKYL++ 
Sbjct: 15  EKREKKKGKHEKPKPWDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQEC 74

Query: 68  WPVVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKI 127
           WP V+SALKE+GV C+LNL+EGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVPAPQAIKI
Sbjct: 75  WPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKI 134

Query: 128 LDDEMQCDIIKIGNLVRK-------------------KALEILTGCYILVQGNTVAAMGS 187
           L+DE+QCDIIKIGNLVR                    KALEILT CYILVQG+TVAAMG 
Sbjct: 135 LEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGP 194

Query: 188 FKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDR-------KTVKQK 247
           FKGLKQ+RRIVE+C+ N MHPVY+IK LMMKKEL  DPALANE+WDR       K VKQK
Sbjct: 195 FKGLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQK 254

Query: 248 KVKSKQKKPYTPFPPPQQPSQIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRK 307
           K KSK+KKPYTPFPPPQ PS+ID+QLE+GEYF+SDKKKS KKWQ+KQEKQ+EK+ ENKRK
Sbjct: 255 KPKSKEKKPYTPFPPPQPPSKIDMQLESGEYFMSDKKKSEKKWQEKQEKQSEKSTENKRK 314

Query: 308 REAAFVPPKEPPKQDT---KLDGDNNDIAEMAKALKEKAKAFGK-RKAAETINPEAYIA- 348
           R+A+F+PP+EP   ++   K +   NDI E+  +LK K K   K +K  E +N E YIA 
Sbjct: 315 RDASFLPPEEPMNNNSNANKSEDGKNDITELTNSLKSKTKELKKQKKTHERVNAEEYIAG 374

The following BLAST results are available for this feature:

BLAST of Lsi11G016220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74777	5.6e-83	53.50	KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (st...	[more]
B3LU25	3.2e-78	52.61	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11...	[more]
B5VEQ2	3.2e-78	52.61	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI...	[more]
C8Z430	3.2e-78	52.61	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalv...	[more]
P25586	3.2e-78	52.61	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC...	[more]

BLAST of Lsi11G016220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLG6	1.3e-178	88.33	KRR1 small subunit processome component OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HWB5	6.2e-178	88.06	KRR1 small subunit processome component OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]
A0A5D3CP78	1.8e-177	88.92	KRR1 small subunit processome component OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0K7G6	5.3e-177	88.39	KRR1 small subunit processome component OS=Cucumis sativus OX=3659 GN=Csa_7G2378...	[more]
A0A1S3BGN7	2.6e-176	88.39	KRR1 small subunit processome component OS=Cucumis melo OX=3656 GN=LOC103489650 ...	[more]

BLAST of Lsi11G016220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888683.1	1.7e-182	89.95	KRR1 small subunit processome component homolog [Benincasa hispida] >XP_03888868...	[more]
XP_023511730.1	1.5e-178	88.33	KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022952886.1	2.6e-178	88.33	KRR1 small subunit processome component homolog [Cucurbita moschata] >XP_0229528...	[more]
KAG7012057.1	5.8e-178	88.33	mis3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969421.1	1.3e-177	88.06	KRR1 small subunit processome component homolog [Cucurbita maxima] >XP_022969422...	[more]

BLAST of Lsi11G016220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08420.1	2.5e-131	66.49	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 145..215 e-value: 6.3E-31 score: 108.3
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 44..130 e-value: 1.5E-42 score: 145.4
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 131..214
IPR024166	Ribosomal RNA assembly KRR1	PIRSF	PIRSF006515	KRR1	coord: 145..329 e-value: 1.3E-60 score: 203.0 coord: 1..147 e-value: 4.5E-65 score: 217.7
IPR024166	Ribosomal RNA assembly KRR1	PANTHER	PTHR12581	HIV-1 REV BINDING PROTEIN 2, 3	coord: 2..331
IPR041174	Krr1, KH1 domain	PFAM	PF17903	KH_8	coord: 50..130 e-value: 1.7E-30 score: 105.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..352
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..305

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G016220.1	Lsi11G016220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0003723	RNA binding