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Lsi11G016170 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AATTTGTTCCCGTTATTAACCCATATGGCTTCAATTCCTCAATTCTACTGTGATCAGTATACACCGGTGGTAGCTCCTCCTACAACGGCGGCGTCTGTTGGCACCGGCGGCGGCCCATTCTGGGGGGAAGAAACTAATTTAGTTCCTTTGTTGGATGATTTTGGGCTTCTACCTACTCAATATTCTTCAGCGCTACCTATTGATCCCGCCACGACGACGTCGTTTCCTCAACAAGACATGCTAGCCTTCCCTCAACTTAATATGATTGATGATCATAATGCAGGAGGATCTCAAAACTTTTGCCATTTTGGTTGTCAACCAGATCATCAATTCTATGAATTTCCCGACGATTGTTACGGATTGGTGCCTGAGATCAAACCAATTTACCATCCTCTCCCTTCCCATAATTGGGTATTTTCATCTATCTCTTCGGTTACACTGTTGATATAATATTTAATTTACTCGTTTTTTTTGTCAATCAGTCATTTAACATCTTCCAAAAAAATCCATCATATATTTTTTTTAATATTTTAAGTCTGGTTTGATATTCATCATGTATAATATATTTATTTTGTATTGTACATTTTTACAATACATTTTAATTTATAAAGTCATATTTATTTACATATGGATGAACTTAATCATATAGGAAAATCAAAGCAATCAAGTTCCTGTAGCTGAGGATTCAAACATGAAGGTCGGCCGCTATTCTGAAGAAGTACGAAAAGAAAGGATTCTGCGGTATTTGAAGAAAAGAAATCAGAGAAATTTCAATAAAACCATCAAGGTTATATAATCATATATAATTAAATTTGTCTTCTATGTTAAAGTAGGGATATAATTAAACTTATTTGTAACATATCAATTTTTAATACAGTATGCGTGTCGAAAAACCTTAGCCGACCGAAGGATTCGAGTCCGAGGGAGATTTGCAAGGAACAATGAAGCATCTGATCAAGAAATTATTAATAATCCAACGACAAAGAATGACACTTCTATTCACAAAGACGCTGAATTTTTATACAACAACCATGATTTTGGTCTCCAGGTATCTAATTTAATATTATGATTTCTTTAATTATTTTTTTAAAAAAATTGATTTAATTTCTTAAAATTAGAAAGGGTGATTATATTAATAAATCAAAAAGGAAGATGTAATCGATATAACATTTAGGATAATGGTAAACAGTAGCACTTCTAACACTAATAATTAAGTGTATAACAACATTTTTAAATAATTATGGATATAGTAAAATCTATTATGATACACTTCGAAAGCTAAATCTAAATTTTGCTATATCTACAAATTCTTTTGCATCATGCTATATTTGTTAAACCTCTGCCAGATTGCTATATTTAGCACTACTAATATTTATGGTTTGAACTTTTGCAGATGAAAAGGGATGAGGAAGAATGGGTACAAGAAATCACGAGCCTAATGTGTTTACCATATATCAGTAGTTGAGATAATGGAATTGATGAAGATCAAAAGGAGCAGCAAAAAGAGGAAATGAAAACATTTGACTTATTATAAATAGTGGTGATAGCTATAATATATATATTATATATGGTGTATTTTAATTAATTAATTAACCAGCTAATGATATTGTTCCCGACTGTGTGTGTGTGTTAATTAATTTTACGGTCATCCTAGGATTTTGAAACATAGGAGACTAACACAAGGAATCTAATTATGTTTTCCGACGTCGTCTTTTGGTGTCGATTAATTAATTTGAAATTAATTATATCTCAAATGTGATTCCTTATTTTGGTTGAGCATTTTGTGGTGTACTTTGATGCAATGATTCAAATAGTGAGTTTGATACAGAAATAAATAAATAAATATTTATATTTATATGGTTCGAAAAGCTAGTTGTCGTTTGTACTTGATGGGATCGGATACTATTGATTTGTTCATGATCATCACTAAATTATTATTCTCTTATTTATATTGTATAGTGGGATTTATATATTTATATCACACCCAACATGTATGTATTGGTATGAGTACCCATTGTGGGATTAGAATGAAAAAGTGGCTCTTCAGATTCTTCCTAGTTAATTGTTGTAATATTTAGCTAATCTAAAGAAAATTCTAAGTCACAAGGAGACTTAGATGGTGAATATTGAGACATTTTTTCATTAGCTACTATTCGGTGTAAAAAATCTAACATCTTTAATAGTTACGATGCTTCCTCTATAGCTCTAAATTGGAAGGTTTTTTCCTAGCCTCCTCATTTTTCTCTTTTGTATTTTGAGCTTCTCTCTTGCTCATTTTTGTACTCTTTTTTTAATGGAATGCATCGCTTTTGGACTCGAGCCATGATGAGGGTGCTACGGATGTGTCAACCTAGTTGAGATATCCCAGTGCACTCCATGATCCCCCTCCTCGAGTATCTTGTTACAAAAAAAATGGTGAATATTGAGACAACATTAATTTTAATATTCAGTTTTTGCTCAATAAACATAACTTAGTAGGTAAGACATCAATTAAAATGAATGCTTAAAAAAAAAGTAGATAAGATATTACTTATCATATAAAAAGTCAATAGTTGATCAATCATCCTTTCAATTATTTTTTTATTTAACAAGATACTAGAAGTAGAGGGAATTAACAGTAGCTGCATCATTCTTGCTGCGGATTCCATGTTGGATAAAGAAAAGGACCTCACACTCTTAATATTAAAATGCTATAAAAAGTTCAACCTTTGTATAGCATTTAGTAACACGCTATGAAATACTTGATTTTTTATAACATTTTACAAACCACATTTGATCTTTGTAACATGTAAGATAACATTTTGAAAAAGGGTATAAAAATATTTTTATAGCCAAAATGTGAGGTTATTGTTTGTCTATTATAGCATTTATTTGCAGCTATAACACTATTTCTTTGATGCAAGCTATAATAAGCCTTCAAATATTGAGAAAAAAATTCTTTCCATATCTTTTATAAAATTTTGTAGCTTTTTTATTATATCCATATTGTTGTAATTGTGTTTTATACCTTGTTACACATTAAAAGTAAAAAGAAAATATTTATAATTCACATGATCAAAATATGTATATCTAAATAAGCATTCACACAAGATTCATATTGTAAAATATATATATATATATATATATAAATTAGTATCTTATATTTAGAGATGAACAAAACATAAACTTTATAAATTACAAAATGTTGATATATAGAAAAAAAATCTCTTTTTCAAATAAATAGGCATTGAGAAAGAATTTAAACACTGTTAGGTTGTAATGACAACAAAGTTTGAATTCAAATTAATGAATTAACTATGTAAAACAGACATCAAATTATCTCTTTTTCAAAGTACATTTGGATTCCCTTTTTGCACGAACATATTACCCTATTCCTTAAGATTTGCTCTTTGCTATATCTTAAGGTGCTTTTTTTTTTTTTTTCCTTTTTTGACCTCATGGTGCCACATATCATTATCATAATCTACAATATATTTTATTGTCAATAATCATAATATTACATCTTAGATTATGTTTGTGGTAAATAGCATATAACTAGCCGTAGCTAATTAATTCATTTGAACTTAGTGGAATAATCTTGATTAACAAAAATGGAACCTTTGGAGGAGAATATATATAAAATTAGAATAATAAAAGAGCATTTGCGATATTTTATTTGATCTTGCAGACTTGTAGCCCTCTCCTCTCTAAACAACTCAATATGAACATGGCAAAGGAAAATTAG AATTTGTTCCCGTTATTAACCCATATGGCTTCAATTCCTCAATTCTACTGTGATCAGTATACACCGGTGGTAGCTCCTCCTACAACGGCGGCGTCTGTTGGCACCGGCGGCGGCCCATTCTGGGGGGAAGAAACTAATTTAGTTCCTTTGTTGGATGATTTTGGGCTTCTACCTACTCAATATTCTTCAGCGCTACCTATTGATCCCGCCACGACGACGTCGTTTCCTCAACAAGACATGCTAGCCTTCCCTCAACTTAATATGATTGATGATCATAATGCAGGAGGATCTCAAAACTTTTGCCATTTTGGTTGTCAACCAGATCATCAATTCTATGAATTTCCCGACGATTGTTACGGATTGGTGCCTGAGATCAAACCAATTTACCATCCTCTCCCTTCCCATAATTGGGAAAATCAAAGCAATCAAGTTCCTGTAGCTGAGGATTCAAACATGAAGGTCGGCCGCTATTCTGAAGAAGTACGAAAAGAAAGGATTCTGCGGTATTTGAAGAAAAGAAATCAGAGAAATTTCAATAAAACCATCAAGTATGCGTGTCGAAAAACCTTAGCCGACCGAAGGATTCGAGTCCGAGGGAGATTTGCAAGGAACAATGAAGCATCTGATCAAGAAATTATTAATAATCCAACGACAAAGAATGACACTTCTATTCACAAAGACGCTGAATTTTTATACAACAACCATGATTTTGGTCTCCAGACTTGTAGCCCTCTCCTCTCTAAACAACTCAATATGAACATGGCAAAGGAAAATTAG ATGGCTTCAATTCCTCAATTCTACTGTGATCAGTATACACCGGTGGTAGCTCCTCCTACAACGGCGGCGTCTGTTGGCACCGGCGGCGGCCCATTCTGGGGGGAAGAAACTAATTTAGTTCCTTTGTTGGATGATTTTGGGCTTCTACCTACTCAATATTCTTCAGCGCTACCTATTGATCCCGCCACGACGACGTCGTTTCCTCAACAAGACATGCTAGCCTTCCCTCAACTTAATATGATTGATGATCATAATGCAGGAGGATCTCAAAACTTTTGCCATTTTGGTTGTCAACCAGATCATCAATTCTATGAATTTCCCGACGATTGTTACGGATTGGTGCCTGAGATCAAACCAATTTACCATCCTCTCCCTTCCCATAATTGGGAAAATCAAAGCAATCAAGTTCCTGTAGCTGAGGATTCAAACATGAAGGTCGGCCGCTATTCTGAAGAAGTACGAAAAGAAAGGATTCTGCGGTATTTGAAGAAAAGAAATCAGAGAAATTTCAATAAAACCATCAAGTATGCGTGTCGAAAAACCTTAGCCGACCGAAGGATTCGAGTCCGAGGGAGATTTGCAAGGAACAATGAAGCATCTGATCAAGAAATTATTAATAATCCAACGACAAAGAATGACACTTCTATTCACAAAGACGCTGAATTTTTATACAACAACCATGATTTTGGTCTCCAGACTTGTAGCCCTCTCCTCTCTAAACAACTCAATATGAACATGGCAAAGGAAAATTAG MASIPQFYCDQYTPVVAPPTTAASVGTGGGPFWGEETNLVPLLDDFGLLPTQYSSALPIDPATTTSFPQQDMLAFPQLNMIDDHNAGGSQNFCHFGCQPDHQFYEFPDDCYGLVPEIKPIYHPLPSHNWENQSNQVPVAEDSNMKVGRYSEEVRKERILRYLKKRNQRNFNKTIKYACRKTLADRRIRVRGRFARNNEASDQEIINNPTTKNDTSIHKDAEFLYNNHDFGLQTCSPLLSKQLNMNMAKEN Homology
BLAST of Lsi11G016170 vs. ExPASy Swiss-Prot
Match: Q9FHH8 (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=COL5 PE=2 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06 Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy Swiss-Prot
Match: O50055 (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=COL1 PE=1 SV=1) HSP 1 Score: 48.9 bits (115), Expect = 9.7e-05 Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy Swiss-Prot
Match: Q9SK53 (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=COL3 PE=1 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04 Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy Swiss-Prot
Match: Q39057 (Zinc finger protein CONSTANS OS=Arabidopsis thaliana OX=3702 GN=CO PE=1 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04 Identity = 37/100 (37.00%), Postives = 51/100 (51.00%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy Swiss-Prot
Match: Q9LKL2 (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana OX=3702 GN=APRR1 PE=1 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 2.2e-04 Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy TrEMBL
Match: A0A5A7U7B4 (Zinc finger protein CONSTANS-LIKE 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00300 PE=4 SV=1) HSP 1 Score: 285.4 bits (729), Expect = 2.3e-73 Identity = 172/258 (66.67%), Postives = 193/258 (74.81%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy TrEMBL
Match: A0A6J1JLF7 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita maxima OX=3661 GN=LOC111486274 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 4.7e-71 Identity = 161/253 (63.64%), Postives = 178/253 (70.36%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy TrEMBL
Match: A0A0A0K3I7 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237850 PE=4 SV=1) HSP 1 Score: 275.8 bits (704), Expect = 1.8e-70 Identity = 172/257 (66.93%), Postives = 191/257 (74.32%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy TrEMBL
Match: A0A1S3BG50 (uncharacterized protein LOC103489646 OS=Cucumis melo OX=3656 GN=LOC103489646 PE=4 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 1.5e-69 Identity = 169/258 (65.50%), Postives = 190/258 (73.64%), Query Frame = 0
BLAST of Lsi11G016170 vs. ExPASy TrEMBL
Match: A0A6J1ES17 (zinc finger protein CONSTANS-LIKE 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437041 PE=4 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 7.5e-69 Identity = 157/254 (61.81%), Postives = 177/254 (69.69%), Query Frame = 0
BLAST of Lsi11G016170 vs. NCBI nr
Match: XP_038888885.1 (two-component response regulator-like APRR1 [Benincasa hispida]) HSP 1 Score: 403.3 bits (1035), Expect = 1.5e-108 Identity = 213/256 (83.20%), Postives = 220/256 (85.94%), Query Frame = 0
BLAST of Lsi11G016170 vs. NCBI nr
Match: KAA0051090.1 (zinc finger protein CONSTANS-LIKE 5 [Cucumis melo var. makuwa]) HSP 1 Score: 285.4 bits (729), Expect = 4.7e-73 Identity = 172/258 (66.67%), Postives = 193/258 (74.81%), Query Frame = 0
BLAST of Lsi11G016170 vs. NCBI nr
Match: XP_022989100.1 (zinc finger protein CONSTANS-LIKE 5-like [Cucurbita maxima]) HSP 1 Score: 277.7 bits (709), Expect = 9.8e-71 Identity = 161/253 (63.64%), Postives = 178/253 (70.36%), Query Frame = 0
BLAST of Lsi11G016170 vs. NCBI nr
Match: XP_011659034.1 (zinc finger protein CONSTANS-LIKE 5 [Cucumis sativus] >KAE8646103.1 hypothetical protein Csa_016552 [Cucumis sativus]) HSP 1 Score: 275.8 bits (704), Expect = 3.7e-70 Identity = 172/257 (66.93%), Postives = 191/257 (74.32%), Query Frame = 0
BLAST of Lsi11G016170 vs. NCBI nr
Match: XP_023530352.1 (zinc finger protein CONSTANS-LIKE 5-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 273.1 bits (697), Expect = 2.4e-69 Identity = 157/253 (62.06%), Postives = 179/253 (70.75%), Query Frame = 0
BLAST of Lsi11G016170 vs. TAIR 10
Match: AT3G12890.1 (activator of spomin::LUC2 ) HSP 1 Score: 119.4 bits (298), Expect = 4.1e-27 Identity = 88/229 (38.43%), Postives = 123/229 (53.71%), Query Frame = 0
BLAST of Lsi11G016170 vs. TAIR 10
Match: AT5G41380.1 (CCT motif family protein ) HSP 1 Score: 91.7 bits (226), Expect = 9.2e-19 Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 0
BLAST of Lsi11G016170 vs. TAIR 10
Match: AT1G63820.1 (CCT motif family protein ) HSP 1 Score: 84.0 bits (206), Expect = 1.9e-16 Identity = 53/123 (43.09%), Postives = 69/123 (56.10%), Query Frame = 0
BLAST of Lsi11G016170 vs. TAIR 10
Match: AT1G04500.1 (CCT motif family protein ) HSP 1 Score: 83.2 bits (204), Expect = 3.3e-16 Identity = 64/143 (44.76%), Postives = 80/143 (55.94%), Query Frame = 0
BLAST of Lsi11G016170 vs. TAIR 10
Match: AT2G33350.1 (CCT motif family protein ) HSP 1 Score: 81.3 bits (199), Expect = 1.2e-15 Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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