Lsi11G015980 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G015980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 24337853 .. 24338032 (+)
RNA-Seq ExpressionLsi11G015980
SyntenyLsi11G015980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCCACGTGTCGCGGGTTATGACAAGCTGAGCTGCCAACCAATTTGGCGAGACATCCCTGTCACGCGCCCCTACGGAAAACATTGTTTCCAATTCCGGCAACAATGCTCCACCTTCAATCTCATCCCCTTCAAATTCCATGTTTCCGACTCCACATTCCTCCTCCCTAAGGCCTAG

mRNA sequence

ATGACGCCACGTGTCGCGGGTTATGACAAGCTGAGCTGCCAACCAATTTGGCGAGACATCCCTGTCACGCGCCCCTACGGAAAACATTGTTTCCAATTCCGGCAACAATGCTCCACCTTCAATCTCATCCCCTTCAAATTCCATGTTTCCGACTCCACATTCCTCCTCCCTAAGGCCTAG

Coding sequence (CDS)

ATGACGCCACGTGTCGCGGGTTATGACAAGCTGAGCTGCCAACCAATTTGGCGAGACATCCCTGTCACGCGCCCCTACGGAAAACATTGTTTCCAATTCCGGCAACAATGCTCCACCTTCAATCTCATCCCCTTCAAATTCCATGTTTCCGACTCCACATTCCTCCTCCCTAAGGCCTAG

Protein sequence

MTPRVAGYDKLSCQPIWRDIPVTRPYGKHCFQFRQQCSTFNLIPFKFHVSDSTFLLPKA
Homology
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BLAST of Lsi11G015980 vs. NCBI nr
Match: KAG6572480.1 (hypothetical protein SDJN03_29208, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-04
Identity = 28/45 (62.22%), Postives = 29/45 (64.44%), Query Frame = 0 

Query: 18 RDIPVTRPYGKHC----FQFRQQCSTFNLIPFKFHVSDSTFLLPK 59
          R +P TR Y   C    FQFRQQ STFNLI FKFH S S  LLPK
Sbjct: 2  RRLPATRLYRNQCYIILFQFRQQWSTFNLISFKFHASGSIILLPK 46

The following BLAST results are available for this feature:
BLAST of Lsi11G015980 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G015980 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G015980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6572480.12.4e-0462.22hypothetical protein SDJN03_29208, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lsi11G015980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G015980.1Lsi11G015980.1mRNA