Lsi11G015890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G015890
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionX8 domain-containing protein
Locationchr11: 24284822 .. 24286621 (-)
RNA-Seq ExpressionLsi11G015890
SyntenyLsi11G015890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCACATCATGGCTATTGGCTAGACATCCACCAAGAAAAATAAGAATAAAGTTAGGAGTTAGGAGCCATGCAATTGCACTCTACCTGGGTGCCCCTCACTTTTTTAGCCTATGCTTAATCCAAAGCAATTGTAATGCCATGCTTAGCAAAGAAGTAAACCCGCATTTTCCTTTTTTTTTCTCTAACAAAAATAGTTTGGAAGTCATTTAAAACGGTTAAAATCATTTTTGTCATTTTTTAAAATTATTTCAAAATATATTTTTAATCTTTTAAAACTAAATTTTACGATGTGAAAGTTGCACTTATAAAATTAAATTTTAACTAATGTGTTTTTAGAATGCTTTTAAATTTAATAAAAATAATTTTAATAATTTCAAAATTACTCTCAAATATGCACAAAAAGAATTAATGTTCCTTTCGTCTTGAATCTCAAAATTTTGATAATTTCTTTGATTCTTTTTAGTCCATGTACACATGTTTATTATCTCGAGACTCTATCAACTTTTAGTTCATTTTAATTTGGGTGATTTTTAATGTTCATTTTGATAATCCTCAAAATATTTTACTTTTAAAAAATAAAAAACTAAATGATTCGGGACGAAAATGAAGATTTTGCACACATAAGTTAAAATAAACAAAAGTTAAAAGAGTATATAACCCAAAATTAACATATTGAAAGTCCATGAAGCAAAAAATACCAAATTTAACTTAATAACTATTTACATGTCTAAAGACATAAATTCAAGATATTTTCTCTCTATAGAAGGCGAAGGACCAATTAAATTGTGGCATCTCACGAATAATTTGGGTTGTGTTAGATGGTAGAAGTGTGCATAGAAAGTCAAAGAAACTCCAGCTGGCGAAATACTTAGATGTAATTGGTCAAAAGGTGAGCCACGTGGATGGAGCGACAAATTCCCAACCTTATGTGAGCTCCCCATTCACTCTGCCGCCATTCGATTCACTGCCGGACAACGCGCCGCCTTACTGCTCCTATCCCCCAAATATTCCTCAGCCTCCTTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCGCCCTTTTATTATCAGAGCCCGCCTCCGACCCCAACCTACGGCTTTCCTCCCTCTCCACCCAGCATCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACACTCCGAGCCCACCCTCTCCGACGGTGTTCATGCCGAGCCCACCCGTGTTCCAACCACCCGTGATTTACCCTCCACCCAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTCTGGTGTGTCGCCAAGCCCTCCGTACCGGACCCAATCATTCAAGAGGCCATGAACTATGCCTGTGGGACGGTAGCGGATTGCGATTCCATTCTCCCTAATGGCCCTTGCTTTCTCCCCAACACTCTCATCGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGAGAACTAAGGTGGGCGGTGGCACTTGCGAATTTGGTGGTACTGCCATGCTTGTCACCGTCGATCCCAGTAAGTTTCTAATTTTCTCCCCCTTTTTCTTTTGGAAAATTTTAAAAAAATATAAAAATAAAAAAACTATTTACCTGAAATAACAAAAAATTTAGAGAGTTATAATTGACGCTCATAGAATTATTGATAGAAGTTTATCATTATGTTATCAATGTCTATCATTATTGATTATATTTAAAAGGTAAAAAATATTGTTTTAATTGACAAAATGCTAAAAATATTTATAAATACAACCAAATTTTAGTTCATTTTCTATTTTTTTAGACACAAACAAATAA

mRNA sequence

ATGAAAAGTGTGCATAGAAAGTCAAAGAAACTCCAGCTGGCGAAATACTTAGATGTAATTGGTCAAAAGGTGAGCCACGTGGATGGAGCGACAAATTCCCAACCTTATGTGAGCTCCCCATTCACTCTGCCGCCATTCGATTCACTGCCGGACAACGCGCCGCCTTACTGCTCCTATCCCCCAAATATTCCTCAGCCTCCTTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCGCCCTTTTATTATCAGAGCCCGCCTCCGACCCCAACCTACGGCTTTCCTCCCTCTCCACCCAGCATCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACACTCCGAGCCCACCCTCTCCGACGGTGTTCATGCCGAGCCCACCCGTGTTCCAACCACCCGTGATTTACCCTCCACCCAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTCTGGTGTGTCGCCAAGCCCTCCGTACCGGACCCAATCATTCAAGAGGCCATGAACTATGCCTGTGGGACGGTAGCGGATTGCGATTCCATTCTCCCTAATGGCCCTTGCTTTCTCCCCAACACTCTCATCGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGAGAACTAAGGTGGGCGGTGGCACTTGCGAATTTGGTGACACAAACAAATAA

Coding sequence (CDS)

ATGAAAAGTGTGCATAGAAAGTCAAAGAAACTCCAGCTGGCGAAATACTTAGATGTAATTGGTCAAAAGGTGAGCCACGTGGATGGAGCGACAAATTCCCAACCTTATGTGAGCTCCCCATTCACTCTGCCGCCATTCGATTCACTGCCGGACAACGCGCCGCCTTACTGCTCCTATCCCCCAAATATTCCTCAGCCTCCTTCCTCGCCCTTCACCTACATTTCATCGCCGCCGCCGCCGCCCTTTTATTATCAGAGCCCGCCTCCGACCCCAACCTACGGCTTTCCTCCCTCTCCACCCAGCATCACCCCGCCTTACTATTACGAGCCCAGCCCTCCAAGCTACACTCCGAGCCCACCCTCTCCGACGGTGTTCATGCCGAGCCCACCCGTGTTCCAACCACCCGTGATTTACCCTCCACCCAGCGTGCCGCCCCCTCCCCACTCCGCACCCAATATAGCCCTCTGGTGTGTCGCCAAGCCCTCCGTACCGGACCCAATCATTCAAGAGGCCATGAACTATGCCTGTGGGACGGTAGCGGATTGCGATTCCATTCTCCCTAATGGCCCTTGCTTTCTCCCCAACACTCTCATCGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGAGAACTAAGGTGGGCGGTGGCACTTGCGAATTTGGTGACACAAACAAATAA

Protein sequence

MKSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPSPTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDTNK
Homology
BLAST of Lsi11G015890 vs. ExPASy Swiss-Prot
Match: P13983 (Extensin OS=Nicotiana tabacum OX=4097 GN=HRGPNT3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.7e-06
Identity = 63/139 (45.32%), Postives = 71/139 (51.08%), Query Frame = 0

Query: 35  PYVSSPFTLPPFDSLPDNAPPYCSYPPNI---PQPPSSPFTYISSPPPPPFYYQSPPPTP 94
           P  SSP   PP        PP  S PP     P PPSSP    S  PPPP Y QSPPP P
Sbjct: 339 PLPSSPIYSPPPPVYSPPPPPSYSPPPPTYLPPPPPSSP-PPPSFSPPPPTYEQSPPPPP 398

Query: 95  TYGFP-PSPPSIT-PPYYYEPSPPSYTPSPPSPTVFMPSPPVFQPPVIYPPP--SVPPPP 154
            Y  P P+PP+ + PP  Y P PP+Y   PP P  + P PP + PP   PPP  S PPP 
Sbjct: 399 AYSPPLPAPPTYSPPPPTYSPPPPTYAQPPPLPPTYSPPPPAYSPP---PPPTYSPPPPT 458

Query: 155 HSAPNIALWCVAKPSVPDP 167
           +S P  A    A+P  P P
Sbjct: 459 YSPPPPA---YAQPPPPPP 470

BLAST of Lsi11G015890 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.3e-05
Identity = 52/120 (43.33%), Postives = 59/120 (49.17%), Query Frame = 0

Query: 30  ATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPPPPPFYYQSPPP 89
           + + +P V +P   P   S P  AP + + P     PP SP   + SPPPPP     PPP
Sbjct: 391 SVSPRPPVVTPLPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPP-----PPP 450

Query: 90  TPTYGFPPSPPSITPPYYYEPSPPSYTPSPPSPTVF--MPSPPVFQPPVIYPPPSVPPPP 148
            P Y  PP PP   PP  Y P PP   P PP P      PSPP   PPV  PPP  PPPP
Sbjct: 451 PPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPP 505

BLAST of Lsi11G015890 vs. ExPASy Swiss-Prot
Match: Q9XIB6 (Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=PEX2 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 59/135 (43.70%), Postives = 64/135 (47.41%), Query Frame = 0

Query: 25  SHVDGATNSQPYVSSPF---TLPPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPP--- 84
           +   G T   PY +SP      PP   + D   P    PP  P P  SP + I SPP   
Sbjct: 501 NEAQGPTPDDPYDASPVKNRRSPPPPKVEDTRVP----PPQPPMPSPSPPSPIYSPPPPV 560

Query: 85  --PPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPSPTVFMPSPPVFQPPV 144
             PPP  Y SPPP   Y   P PP  +PP    PSPP    SPP P VF P PPVF PP 
Sbjct: 561 HSPPPPVYSSPPPPHVYS--PPPPVASPP---PPSPPPPVHSPPPPPVFSPPPPVFSPPP 620

Query: 145 IYPPPSVPPPPHSAP 152
             P  S PPP HS P
Sbjct: 621 PSPVYSPPPPSHSPP 626

BLAST of Lsi11G015890 vs. ExPASy Swiss-Prot
Match: Q9XIL9 (Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=PEX3 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.3e-05
Identity = 62/136 (45.59%), Postives = 67/136 (49.26%), Query Frame = 0

Query: 32  NSQPYVSSPFTLPPFDSLPDNA----PPYCSYPPNIPQPPSSPFTYISSPPPPPFY---- 91
           +S P  SSP T PP  S P       PP  S  PN P    SP  +  SPPPPP +    
Sbjct: 445 HSPPPASSPPTSPPVHSTPSPVHKPQPPKESPQPNDPY-DQSPVKFRRSPPPPPVHSPPP 504

Query: 92  ---YQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPSPTVFMPSPPVFQ--PPVIY 151
                SPPP P Y  PP PP  +PP    P PP Y+P PP P V  P PPV    PPV  
Sbjct: 505 PSPIHSPPPPPVYSPPPPPPVYSPP----PPPPVYSP-PPPPPVHSPPPPVHSPPPPVHS 564

BLAST of Lsi11G015890 vs. ExPASy Swiss-Prot
Match: O65375 (Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=LRX1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-04
Identity = 52/133 (39.10%), Postives = 62/133 (46.62%), Query Frame = 0

Query: 44  PPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPPPPPFYYQSPPPTP-TYGFPPSPP-- 103
           PP+  +   +P   +YPP  P  PS P  Y+ S PPPP+ Y SPPP P  Y  PP PP  
Sbjct: 444 PPYSKM---SPSVRAYPPPPPPSPSPPPPYVYSSPPPPYVYSSPPPPPYVYSSPPPPPYV 503

Query: 104 --SITPPYYYEPSPPSYTPSPPSPTVFMPSPPVFQ----PPVIYPPPSVPPPPHSAPNIA 163
             S  PPY Y   PP Y  S P P    P PP  +    PPV+Y  P    PP  +P   
Sbjct: 504 YSSPPPPYVYSSPPPPYVYSSPPPPPPSPPPPCPESSPPPPVVYYAPVTQSPPPPSPVYY 563

Query: 164 LWCVAKPSVPDPI 168
                 P  P P+
Sbjct: 564 PPVTQSPPPPSPV 573

BLAST of Lsi11G015890 vs. ExPASy TrEMBL
Match: A0A5A7VA81 (Extensin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00410 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.4e-114
Identity = 212/223 (95.07%), Postives = 217/223 (97.31%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHRKSKKLQLAKYLDVIG+KVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 27  RSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 86

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPS 121
             PQPPSSPFTYISSPPPPPFYY  PPPTPTYGFPPSPPS+TPPYYYEPSPPSY PSPPS
Sbjct: 87  ITPQPPSSPFTYISSPPPPPFYY-LPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSPPS 146

Query: 122 PTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 181
           PTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD
Sbjct: 147 PTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 206

Query: 182 CDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           CDSILP+GPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 207 CDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 248

BLAST of Lsi11G015890 vs. ExPASy TrEMBL
Match: A0A1S3BHF5 (extensin-2 OS=Cucumis melo OX=3656 GN=LOC103489624 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.4e-114
Identity = 212/223 (95.07%), Postives = 217/223 (97.31%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHRKSKKLQLAKYLDVIG+KVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 27  RSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 86

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPS 121
             PQPPSSPFTYISSPPPPPFYY  PPPTPTYGFPPSPPS+TPPYYYEPSPPSY PSPPS
Sbjct: 87  ITPQPPSSPFTYISSPPPPPFYY-LPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSPPS 146

Query: 122 PTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 181
           PTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD
Sbjct: 147 PTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 206

Query: 182 CDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           CDSILP+GPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 207 CDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 248

BLAST of Lsi11G015890 vs. ExPASy TrEMBL
Match: A0A0A0K3M1 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G239620 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.2e-111
Identity = 208/224 (92.86%), Postives = 215/224 (95.98%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHRKSKKLQLAKYLDVIG+KVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 27  RSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 86

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPS-PP 121
             PQPPSSPFTYISSPPPP  +Y  PPPTPTYGFPPSPPS+TPPYYYEPSPPSY PS PP
Sbjct: 87  ITPQPPSSPFTYISSPPPP--FYYLPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSRPP 146

Query: 122 SPTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVA 181
           SPTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVA
Sbjct: 147 SPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVA 206

Query: 182 DCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           DCDSILP+GPCF+PNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 207 DCDSILPSGPCFMPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 248

BLAST of Lsi11G015890 vs. ExPASy TrEMBL
Match: A0A6J1HW79 (36.4 kDa proline-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468409 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.1e-110
Identity = 207/226 (91.59%), Postives = 211/226 (93.36%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHR+SKKLQLAKYLDVIGQKVSHVDG TNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 55  RSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 114

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQS---PPPTPTYGFPPSPPSITPPYYYEPSPPSYTPS 121
             P PPSSPFTYISSPPPPPFYY     PPPTPTYG   SPPS TPPYYYEPSPPSY PS
Sbjct: 115 ASPLPPSSPFTYISSPPPPPFYYLPPLLPPPTPTYG---SPPSFTPPYYYEPSPPSYVPS 174

Query: 122 PPSPTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGT 181
           PPSPTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGT
Sbjct: 175 PPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGT 234

Query: 182 VADCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           VADCD+ILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 235 VADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 277

BLAST of Lsi11G015890 vs. ExPASy TrEMBL
Match: A0A6J1GN90 (extensin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111455466 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 207/227 (91.19%), Postives = 211/227 (92.95%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHR+SKKLQLAKYLDVIGQKVSHVDG TNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 68  RSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 127

Query: 62  NIPQPPSSPFTYISS-PPPPPFYYQS---PPPTPTYGFPPSPPSITPPYYYEPSPPSYTP 121
             P PPSSPFTYISS PPPPPFYY     PPPTPTYG   SPPS TPPYYYEPSPPSY P
Sbjct: 128 ATPLPPSSPFTYISSPPPPPPFYYLPPLLPPPTPTYG---SPPSFTPPYYYEPSPPSYVP 187

Query: 122 SPPSPTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACG 181
           SPPSPTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACG
Sbjct: 188 SPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACG 247

Query: 182 TVADCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           TVADCD+ILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 248 TVADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 291

BLAST of Lsi11G015890 vs. NCBI nr
Match: KAA0062805.1 (extensin-2 [Cucumis melo var. makuwa] >TYJ96748.1 extensin-2 [Cucumis melo var. makuwa])

HSP 1 Score: 422.2 bits (1084), Expect = 2.9e-114
Identity = 212/223 (95.07%), Postives = 217/223 (97.31%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHRKSKKLQLAKYLDVIG+KVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 27  RSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 86

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPS 121
             PQPPSSPFTYISSPPPPPFYY  PPPTPTYGFPPSPPS+TPPYYYEPSPPSY PSPPS
Sbjct: 87  ITPQPPSSPFTYISSPPPPPFYY-LPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSPPS 146

Query: 122 PTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 181
           PTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD
Sbjct: 147 PTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 206

Query: 182 CDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           CDSILP+GPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 207 CDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 248

BLAST of Lsi11G015890 vs. NCBI nr
Match: XP_008447077.1 (PREDICTED: extensin-2 [Cucumis melo])

HSP 1 Score: 422.2 bits (1084), Expect = 2.9e-114
Identity = 212/223 (95.07%), Postives = 217/223 (97.31%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHRKSKKLQLAKYLDVIG+KVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 27  RSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 86

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPS 121
             PQPPSSPFTYISSPPPPPFYY  PPPTPTYGFPPSPPS+TPPYYYEPSPPSY PSPPS
Sbjct: 87  ITPQPPSSPFTYISSPPPPPFYY-LPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSPPS 146

Query: 122 PTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 181
           PTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD
Sbjct: 147 PTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVAD 206

Query: 182 CDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           CDSILP+GPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 207 CDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 248

BLAST of Lsi11G015890 vs. NCBI nr
Match: XP_038889071.1 (leucine-rich repeat extensin-like protein 3 [Benincasa hispida])

HSP 1 Score: 416.4 bits (1069), Expect = 1.6e-112
Identity = 210/228 (92.11%), Postives = 215/228 (94.30%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHRKSKKLQLAKYLDVIGQKVSHVDGATN+QPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 27  RSVHRKSKKLQLAKYLDVIGQKVSHVDGATNTQPYVSSPFTLPPFDSLPDNAPPYCSYPP 86

Query: 62  NIPQPPSSPFTYISSPPPPPFYY-------QSPPPTPTYGFPPSPPSITPPYYYEPSPPS 121
           N PQ PSSPFTYISSPPPPPFYY       QSPPPTPTYGFPPSPP++TPPYYYEPSPPS
Sbjct: 87  NTPQTPSSPFTYISSPPPPPFYYLPPVLPSQSPPPTPTYGFPPSPPNLTPPYYYEPSPPS 146

Query: 122 YTPSPPSPTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNY 181
             PSPPSP VF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNY
Sbjct: 147 NVPSPPSPMVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNY 206

Query: 182 ACGTVADCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG 223
           ACGTVADCDSILPNGPCFLPNTL AHASYAFNSYWQRTKVGGGTCEFG
Sbjct: 207 ACGTVADCDSILPNGPCFLPNTLYAHASYAFNSYWQRTKVGGGTCEFG 254

BLAST of Lsi11G015890 vs. NCBI nr
Match: XP_011659049.1 (extensin-2 [Cucumis sativus] >KGN44300.1 hypothetical protein Csa_016582 [Cucumis sativus])

HSP 1 Score: 410.6 bits (1054), Expect = 8.7e-111
Identity = 208/224 (92.86%), Postives = 215/224 (95.98%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHRKSKKLQLAKYLDVIG+KVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 27  RSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 86

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPS-PP 121
             PQPPSSPFTYISSPPPP  +Y  PPPTPTYGFPPSPPS+TPPYYYEPSPPSY PS PP
Sbjct: 87  ITPQPPSSPFTYISSPPPP--FYYLPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSRPP 146

Query: 122 SPTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVA 181
           SPTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVA
Sbjct: 147 SPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVA 206

Query: 182 DCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           DCDSILP+GPCF+PNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 207 DCDSILPSGPCFMPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 248

BLAST of Lsi11G015890 vs. NCBI nr
Match: XP_022969387.1 (36.4 kDa proline-rich protein-like [Cucurbita maxima])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 207/226 (91.59%), Postives = 211/226 (93.36%), Query Frame = 0

Query: 2   KSVHRKSKKLQLAKYLDVIGQKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 61
           +SVHR+SKKLQLAKYLDVIGQKVSHVDG TNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP
Sbjct: 55  RSVHRRSKKLQLAKYLDVIGQKVSHVDGGTNSQPYVSSPFTLPPFDSLPDNAPPYCSYPP 114

Query: 62  NIPQPPSSPFTYISSPPPPPFYYQS---PPPTPTYGFPPSPPSITPPYYYEPSPPSYTPS 121
             P PPSSPFTYISSPPPPPFYY     PPPTPTYG   SPPS TPPYYYEPSPPSY PS
Sbjct: 115 ASPLPPSSPFTYISSPPPPPFYYLPPLLPPPTPTYG---SPPSFTPPYYYEPSPPSYVPS 174

Query: 122 PPSPTVFMPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGT 181
           PPSPTVF+PSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGT
Sbjct: 175 PPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGT 234

Query: 182 VADCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           VADCD+ILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFG T
Sbjct: 235 VADCDTILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGT 277

BLAST of Lsi11G015890 vs. TAIR 10
Match: AT1G79480.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 109/228 (47.81%), Postives = 127/228 (55.70%), Query Frame = 0

Query: 28  DGATNSQPYVSSPFTL--PPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPPPPPFYYQ 87
           D ++N     + P T+  PP  S   N P   S P + P PP S     SS P PP    
Sbjct: 157 DSSSNPNSNPNPPVTVPNPPESSSNPNPPDSSSNPNSNPNPPES-----SSNPNPPVTVP 216

Query: 88  SPPPTPTYGFPPSP-----PSITPPYYYE---PSPPSYTPSPP----------------- 147
           +PP + +   PP       P IT PY  E   P+PP   PSPP                 
Sbjct: 217 NPPESSSNPNPPESSSNPNPPITIPYPPESSSPNPPEIVPSPPESGYTPGPVLGPPYSEP 276

Query: 148 ---SPTVFMPSPPV-FQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYAC 207
              +PT  +PSP   F PP++YPPP  PP P   P  A WCVAKPSVPDPIIQEAMN+AC
Sbjct: 277 GPSTPTGSIPSPSSGFLPPIVYPPPMAPPSPSVTPTSAYWCVAKPSVPDPIIQEAMNFAC 336

Query: 208 GTVADCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           G+ ADC SI PNGPCF PNTL AHAS+A+NSYWQRTK  GG+C FG T
Sbjct: 337 GSGADCHSIQPNGPCFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGT 379

BLAST of Lsi11G015890 vs. TAIR 10
Match: AT1G79480.2 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-36
Identity = 109/228 (47.81%), Postives = 127/228 (55.70%), Query Frame = 0

Query: 28  DGATNSQPYVSSPFTL--PPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPPPPPFYYQ 87
           D ++N     + P T+  PP  S   N P   S P + P PP S     SS P PP    
Sbjct: 156 DSSSNPNSNPNPPVTVPNPPESSSNPNPPDSSSNPNSNPNPPES-----SSNPNPPVTVP 215

Query: 88  SPPPTPTYGFPPSP-----PSITPPYYYE---PSPPSYTPSPP----------------- 147
           +PP + +   PP       P IT PY  E   P+PP   PSPP                 
Sbjct: 216 NPPESSSNPNPPESSSNPNPPITIPYPPESSSPNPPEIVPSPPESGYTPGPVLGPPYSEP 275

Query: 148 ---SPTVFMPSPPV-FQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYAC 207
              +PT  +PSP   F PP++YPPP  PP P   P  A WCVAKPSVPDPIIQEAMN+AC
Sbjct: 276 GPSTPTGSIPSPSSGFLPPIVYPPPMAPPSPSVTPTSAYWCVAKPSVPDPIIQEAMNFAC 335

Query: 208 GTVADCDSILPNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           G+ ADC SI PNGPCF PNTL AHAS+A+NSYWQRTK  GG+C FG T
Sbjct: 336 GSGADCHSIQPNGPCFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGT 378

BLAST of Lsi11G015890 vs. TAIR 10
Match: AT5G67460.1 (O-Glycosyl hydrolases family 17 protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.0e-16
Identity = 67/158 (42.41%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 68  SSPFTYISSPPPPPFYYQSPPPTPTYGFPPSPPSITPPYYYEPSPPSYTPSPPSPTVFMP 127
           SS FT      P P    SP  +P +    SP   T PY+ E   PS +P   +  + +P
Sbjct: 218 SSKFTTSFPTLPSP----SPETSPIHSSIGSPSPPTIPYFPE---PSQSPMESNQGISLP 277

Query: 128 SPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGT-VADCDSIL 187
                 P + Y P   P P        LWCVAKPSV    +Q+++++ACG   A+CD I 
Sbjct: 278 ------PCLPYHPAPSPQPVKKKNVEGLWCVAKPSVAAETLQQSLDFACGQGGANCDEIK 337

Query: 188 PNGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGDT 225
           P+G C+ P+T++AHASYAFNSYWQ+TK  GGTC FG T
Sbjct: 338 PHGICYYPDTVMAHASYAFNSYWQKTKRNGGTCSFGGT 362

BLAST of Lsi11G015890 vs. TAIR 10
Match: AT1G09460.1 (Carbohydrate-binding X8 domain superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 9.3e-10
Identity = 71/206 (34.47%), Postives = 101/206 (49.03%), Query Frame = 0

Query: 24  VSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPPPPPFY 83
           +S+    T     ++ P   P          P  ++PP +   P++P T +   PP    
Sbjct: 18  LSYCSSTTTHHDVLNPPTVFP----TNPTTTPTATFPP-VTITPTNPATTVPIVPP---V 77

Query: 84  YQSPPPTPTYGFPP-----SPPSITPPYYYEPSPP--SYTPSPPSPTVFMPSPPVFQPPV 143
              PPPT T   PP      PP++TPP     + P   Y P+ PS TV +P  PV  PPV
Sbjct: 78  TTIPPPTLT---PPPVITIPPPTLTPPVTNPVTNPVTQYPPTQPSGTVPVP-VPVVAPPV 137

Query: 144 IYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDSILPNGPCFLPNT 203
           +   PSV            WCVAKP      +Q+A++YACG +ADC  +   G C+ P +
Sbjct: 138 VSNSPSVSGQS--------WCVAKPGASQVSLQQALDYACG-IADCSQLQQGGNCYSPIS 197

Query: 204 LIAHASYAFNSYWQRTKVGGGTCEFG 223
           L +HAS+AFNSY+Q+      +C+FG
Sbjct: 198 LQSHASFAFNSYYQKNP-SPQSCDFG 201

BLAST of Lsi11G015890 vs. TAIR 10
Match: AT4G13340.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 9.6e-07
Identity = 52/120 (43.33%), Postives = 59/120 (49.17%), Query Frame = 0

Query: 30  ATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPNIPQPPSSPFTYISSPPPPPFYYQSPPP 89
           + + +P V +P   P   S P  AP + + P     PP SP   + SPPPPP     PPP
Sbjct: 391 SVSPRPPVVTPLPPPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPP-----PPP 450

Query: 90  TPTYGFPPSPPSITPPYYYEPSPPSYTPSPPSPTVF--MPSPPVFQPPVIYPPPSVPPPP 148
            P Y  PP PP   PP  Y P PP   P PP P      PSPP   PPV  PPP  PPPP
Sbjct: 451 PPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPP 505

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P139832.7e-0645.32Extensin OS=Nicotiana tabacum OX=4097 GN=HRGPNT3 PE=2 SV=1[more]
Q9T0K51.3e-0543.33Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Q9XIB61.8e-0543.70Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thali... [more]
Q9XIL92.3e-0545.59Pollen-specific leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thali... [more]
O653751.5e-0439.10Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Match NameE-valueIdentityDescription
A0A5A7VA811.4e-11495.07Extensin-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00410 PE=... [more]
A0A1S3BHF51.4e-11495.07extensin-2 OS=Cucumis melo OX=3656 GN=LOC103489624 PE=4 SV=1[more]
A0A0A0K3M14.2e-11192.86X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G239620 PE=4 SV=... [more]
A0A6J1HW796.1e-11091.5936.4 kDa proline-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468409 P... [more]
A0A6J1GN901.1e-10891.19extensin-2-like OS=Cucurbita moschata OX=3662 GN=LOC111455466 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0062805.12.9e-11495.07extensin-2 [Cucumis melo var. makuwa] >TYJ96748.1 extensin-2 [Cucumis melo var. ... [more]
XP_008447077.12.9e-11495.07PREDICTED: extensin-2 [Cucumis melo][more]
XP_038889071.11.6e-11292.11leucine-rich repeat extensin-like protein 3 [Benincasa hispida][more]
XP_011659049.18.7e-11192.86extensin-2 [Cucumis sativus] >KGN44300.1 hypothetical protein Csa_016582 [Cucumi... [more]
XP_022969387.11.3e-10991.5936.4 kDa proline-rich protein-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G79480.11.2e-3647.81Carbohydrate-binding X8 domain superfamily protein [more]
AT1G79480.21.2e-3647.81Carbohydrate-binding X8 domain superfamily protein [more]
AT5G67460.11.0e-1642.41O-Glycosyl hydrolases family 17 protein [more]
AT1G09460.19.3e-1034.47Carbohydrate-binding X8 domain superfamily protein [more]
AT4G13340.19.6e-0743.33Leucine-rich repeat (LRR) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 69..81
score: 53.85
coord: 110..122
score: 67.69
coord: 88..104
score: 43.53
coord: 123..144
score: 33.64
NoneNo IPR availableGENE3D1.20.58.1040coord: 150..226
e-value: 7.3E-8
score: 34.6
NoneNo IPR availablePANTHERPTHR31044:SF28EXTENSIN-LIKEcoord: 113..224
IPR012946X8 domainSMARTSM00768X8_clscoord: 155..221
e-value: 4.7E-24
score: 95.9
IPR012946X8 domainPFAMPF07983X8coord: 155..224
e-value: 9.3E-20
score: 71.1
IPR044788Carbohydrate-binding X8 domain-containing protein, plantPANTHERPTHR31044BETA-1,3 GLUCANASEcoord: 113..224

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G015890.1Lsi11G015890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0046658 anchored component of plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009506 plasmodesma
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds