Lsi11G015120 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G015120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Wound-responsive family protein
Location	chr11: 23564978 .. 23565226 (+)
RNA-Seq Expression	Lsi11G015120
Synteny	Lsi11G015120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAACAAGAACTTTGGTTGTAGCGGCCAGCGTCGGCGTTGTGGAGGCTCTCAAGGATCAAGGAATTTGCCGGTGGAATAATGTCTTAAGATCGGCGCATCACTACACCAGAAACCATGTGGGGTTTATTTCTCAGGCTAAGAAGTTTTCCTCCGCCGTGCCGTCAGCCAACCACGTCCAACAGTCGGAGGAATCTCTGCGGACGGTCATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

mRNA sequence

ATGAGTTCATCAACAAGAACTTTGGTTGTAGCGGCCAGCGTCGGCGTTGTGGAGGCTCTCAAGGATCAAGGAATTTGCCGGTGGAATAATGTCTTAAGATCGGCGCATCACTACACCAGAAACCATGTGGGGTTTATTTCTCAGGCTAAGAAGTTTTCCTCCGCCGTGCCGTCAGCCAACCACGTCCAACAGTCGGAGGAATCTCTGCGGACGGTCATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Coding sequence (CDS)

ATGAGTTCATCAACAAGAACTTTGGTTGTAGCGGCCAGCGTCGGCGTTGTGGAGGCTCTCAAGGATCAAGGAATTTGCCGGTGGAATAATGTCTTAAGATCGGCGCATCACTACACCAGAAACCATGTGGGGTTTATTTCTCAGGCTAAGAAGTTTTCCTCCGCCGTGCCGTCAGCCAACCACGTCCAACAGTCGGAGGAATCTCTGCGGACGGTCATGTACCTTAGCTGTTGGGGTCCTAATAACTGA

Protein sequence

MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSANHVQQSEESLRTVMYLSCWGPNN

Homology

[Close]

BLAST of Lsi11G015120 vs. ExPASy TrEMBL
Match: A0A5D3C9S0 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003740 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L+VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG ISQAKKFSSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. ExPASy TrEMBL
Match: A0A1S3C1Y6 (uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L+VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG ISQAKKFSSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. ExPASy TrEMBL
Match: A0A0A0K5N2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046650 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.4e-32
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG +SQAKKFSSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. ExPASy TrEMBL
Match: A0A5D3C5F5 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003750 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-32
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR LVVAA+VGVVEALKDQGICRWN++LRSAHHY RNHV  ISQAKK SSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. ExPASy TrEMBL
Match: A0A0A0K6Y8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.2e-32
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR LVVAA+VGVVEALKDQGICRWN++LRSAHHY RNHV  ISQAKK SSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: XP_008455358.1 (PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wound-responsive family protein [Cucumis melo var. makuwa] >TYK07056.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 5.9e-33
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L+VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG ISQAKKFSSAV SAN
Sbjct: 1  MSSSTRALIVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSISQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: XP_004136807.1 (uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical protein Csa_020183 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR L VAA+VGVVEALKDQGICRWN++LRSAHHY RNHVG +SQAKKFSSAV SAN
Sbjct: 1  MSSSTRALFVAATVGVVEALKDQGICRWNHILRSAHHYARNHVGSLSQAKKFSSAVSSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
           +QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RLQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: XP_004136808.1 (uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED: uncharacterized protein LOC103495545 [Cucumis melo] >KAA0031605.1 Wound-responsive family protein [Cucumis melo var. makuwa] >KGN43576.1 hypothetical protein Csa_020502 [Cucumis sativus] >TYK07057.1 Wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 6.5e-32
Identity = 72/82 (87.80%), Postives = 75/82 (91.46%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTR LVVAA+VGVVEALKDQGICRWN++LRSAHHY RNHV  ISQAKK SSAVPSAN
Sbjct: 1  MSSSTRALVVAATVGVVEALKDQGICRWNHLLRSAHHYARNHVRSISQAKKLSSAVPSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
            QQSEESLRTVMYLSCWGPNN
Sbjct: 61 RFQQSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: XP_038888472.1 (uncharacterized protein LOC120078309 [Benincasa hispida])

HSP 1 Score: 146.7 bits (369), Expect = 8.5e-32
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSAN 60
          MSSSTRTLVVAA+VGVVEALKDQGICRWN++LRS HHY RNHV  ISQAKK SS VPSAN
Sbjct: 1  MSSSTRTLVVAATVGVVEALKDQGICRWNHLLRSTHHYARNHVRSISQAKKLSSTVPSAN 60

Query: 61 HVQQSEESLRTVMYLSCWGPNN 83
          H+++SEESLRTVMYLSCWGPNN
Sbjct: 61 HLRRSEESLRTVMYLSCWGPNN 82

[Close]

BLAST of Lsi11G015120 vs. NCBI nr
Match: XP_022952159.1 (uncharacterized protein LOC111454920 [Cucurbita moschata])

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSA- 60
          MSSSTR L+VAASVGVVEALKDQGICRWN+ +RSAHHY +NHVG ISQAKKFS+AVP A 
Sbjct: 1  MSSSTRALIVAASVGVVEALKDQGICRWNHFIRSAHHYAKNHVGSISQAKKFSAAVPPAP 60

Query: 61 -NHVQQSEESLRTVMYLSCWGPNN 83
             + QSEESLRTVMYLSCWGPNN
Sbjct: 61 GKQLHQSEESLRTVMYLSCWGPNN 84

[Close]

BLAST of Lsi11G015120 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-23
Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQ-GICRWNNVLRSAHHYTRNHVGFISQAKKF-SSAVPS 60
          MSS+++T +VAAS+G VEALKDQ G+CRWN V+RSA+ Y RN++  +SQAKK  SS++  
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 ANHVQQSEESLRTVMYLSCWGPN 82
           N  +Q+EESLRTVMYLSCWGP+
Sbjct: 61 TNKTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Lsi11G015120 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-20
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MSSSTRTLVVAASVGVVEALKDQ-GICRWNNVLRSAHHYTRNHVGFISQAKKFSSAVPSA 60
          MSS+++   VA S+G VEALKDQ G+CRWN +LRS + + RN+V  +SQ K+FSS+  SA
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 --------NHVQQSEESLRTVMYLSCWGPN 82
                     +++EESLRTVMYLSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Lsi11G015120 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 27/80 (33.75%), Postives = 38/80 (47.50%), Query Frame = 0


Query: 10 VAASVGVVEALKDQGICRWNNVLRSAHHYTRNHVGFISQAKKFS--SAVPSANHVQQS-- 69
          VA ++  VE LKDQG+ RWN + R  H      V  I+   + S  ++  SA  ++    
Sbjct: 11 VATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRSKPL 70

Query: 70 -----EESLRTVMYLSCWGP 81
               E S    M LSC+GP
Sbjct: 71 STTPFETSFEKAMGLSCFGP 90

The following BLAST results are available for this feature:

BLAST of Lsi11G015120 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G015120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9S0	2.9e-33	87.80	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C1Y6	2.9e-33	87.80	uncharacterized protein LOC103495544 OS=Cucumis melo OX=3656 GN=LOC103495544 PE=...	[more]
A0A0A0K5N2	1.4e-32	86.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046650 PE=4 SV=1	[more]
A0A5D3C5F5	3.2e-32	87.80	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Y8	3.2e-32	87.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046640 PE=4 SV=1	[more]

BLAST of Lsi11G015120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455358.1	5.9e-33	87.80	PREDICTED: uncharacterized protein LOC103495544 [Cucumis melo] >KAA0031604.1 Wou...	[more]
XP_004136807.1	2.9e-32	86.59	uncharacterized protein LOC101222779 [Cucumis sativus] >KGN43577.1 hypothetical ...	[more]
XP_004136808.1	6.5e-32	87.80	uncharacterized protein LOC101223015 [Cucumis sativus] >XP_008455359.1 PREDICTED...	[more]
XP_038888472.1	8.5e-32	85.37	uncharacterized protein LOC120078309 [Benincasa hispida]	[more]
XP_022952159.1	1.8e-29	80.95	uncharacterized protein LOC111454920 [Cucurbita moschata]	[more]

BLAST of Lsi11G015120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	3.5e-23	62.65	Wound-responsive family protein	[more]
AT4G10270.1	2.7e-20	54.44	Wound-responsive family protein	[more]
AT4G33560.1	2.1e-04	33.75	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..80 e-value: 7.5E-31 score: 107.0
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..81
None	No IPR available	PANTHER	PTHR33090:SF56	WOUND-RESPONSIVE FAMILY PROTEIN	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015120.1	Lsi11G015120.1	mRNA