Lsi11G014610 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G014610
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNAJ heat shock N-terminal domain-containing protein
Locationchr11: 23184203 .. 23184587 (-)
RNA-Seq ExpressionLsi11G014610
SyntenyLsi11G014610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGGTTTGCACTGCTCATAATTTAGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

mRNA sequence

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Coding sequence (CDS)

GTCCGCAGCAAAGTGGAACTTGACGATTATGAAACAGCATTGCCAATGCCCGCAAGGCAAAAGCTCGTATTTCCCTTACCTCCACCGCCGAATCCGGGAGAGAAGATGAGCGAAGCAAGTCCTGTGAGAAGGAGAGAAAGTCCATGGGGGATGCCGGAGGGAGAGGATCGGCAACCTAAGCCTCACAGATGCAATGACAGAGTTGAGGATGTTATCCAAGTAAACTTTCACTTCTTTAATTTTTCTCTGTTTATCAGCATCGTTCGCGTTCTTTTCCACATTATTACATCTACTCTTCTTCTTGTTTATTCTGATCTCAATTTGTTTCTAATGGACGGATTTGAAAAATTGATATCGAAATGA

Protein sequence

VRSKVELDDYETALPMPARQKLVFPLPPPPNPGEKMSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNFHFFNFSLFISIVRVLFHIITSTLLLVYSDLNLFLMDGFEKLISK
Homology
BLAST of Lsi11G014610 vs. ExPASy TrEMBL
Match: A0A6J1C410 (uncharacterized protein LOC111008041 OS=Momordica charantia OX=3673 GN=LOC111008041 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-12
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSEA PVRRRESPWGMPEGEDRQPKPHRCNDR EDVIQ  F
Sbjct: 1  MSEARPVRRRESPWGMPEGEDRQPKPHRCNDRAEDVIQAVF 41

BLAST of Lsi11G014610 vs. ExPASy TrEMBL
Match: A0A6J1ES33 (uncharacterized protein LOC111437056 OS=Cucurbita moschata OX=3662 GN=LOC111437056 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSEA PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEARPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

BLAST of Lsi11G014610 vs. ExPASy TrEMBL
Match: A0A6A6KVJ8 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_016511 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PVRRRESPWGMPEGE RQPKPHRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVRRRESPWGMPEGEHRQPKPHRCNDRAEDVIQACF 41

BLAST of Lsi11G014610 vs. ExPASy TrEMBL
Match: A0A6J1JL87 (uncharacterized protein LOC111486214 OS=Cucurbita maxima OX=3661 GN=LOC111486214 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

BLAST of Lsi11G014610 vs. ExPASy TrEMBL
Match: A0A5D3C5J8 (DNAJ heat shock N-terminal domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G004150 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.7e-10
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQV 75
          MSE  PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ+
Sbjct: 1  MSEPRPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQI 39

BLAST of Lsi11G014610 vs. NCBI nr
Match: XP_038886844.1 (uncharacterized protein LOC120077064 [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSEASPVRRRESPWGMPEGEDRQPKPHRCNDR EDVIQ  F
Sbjct: 1  MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRAEDVIQACF 41

BLAST of Lsi11G014610 vs. NCBI nr
Match: XP_022136329.1 (uncharacterized protein LOC111008041 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-12
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSEA PVRRRESPWGMPEGEDRQPKPHRCNDR EDVIQ  F
Sbjct: 1  MSEARPVRRRESPWGMPEGEDRQPKPHRCNDRAEDVIQAVF 41

BLAST of Lsi11G014610 vs. NCBI nr
Match: XP_023530195.1 (uncharacterized protein LOC111792833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSEA PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEARPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

BLAST of Lsi11G014610 vs. NCBI nr
Match: XP_022930654.1 (uncharacterized protein LOC111437056 [Cucurbita moschata] >KAG7022871.1 hypothetical protein SDJN02_16607 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSEA PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEARPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

BLAST of Lsi11G014610 vs. NCBI nr
Match: KAG6589169.1 (Glutamate receptor 3.7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSEA PV+RRESPWGMPEGEDRQPK HRCNDR EDVIQ  F
Sbjct: 1  MSEARPVKRRESPWGMPEGEDRQPKAHRCNDRAEDVIQACF 41

BLAST of Lsi11G014610 vs. TAIR 10
Match: AT1G05205.1 (unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-11
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 36 MSEASPVRRRESPWGMPEGEDRQPKPHRCNDRVEDVIQVNF 77
          MSE  PV RRESPWG+PEG  R+PK HRCNDRVEDVIQ  F
Sbjct: 1  MSETRPVPRRESPWGLPEGH-REPKAHRCNDRVEDVIQALF 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1C4102.4e-1290.24uncharacterized protein LOC111008041 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A6J1ES334.5e-1185.37uncharacterized protein LOC111437056 OS=Cucurbita moschata OX=3662 GN=LOC1114370... [more]
A0A6A6KVJ85.9e-1185.37Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_016511 PE=4 SV=1[more]
A0A6J1JL871.7e-1082.93uncharacterized protein LOC111486214 OS=Cucurbita maxima OX=3661 GN=LOC111486214... [more]
A0A5D3C5J81.7e-1084.62DNAJ heat shock N-terminal domain-containing protein OS=Cucumis melo var. makuwa... [more]
Match NameE-valueIdentityDescription
XP_038886844.11.3e-1292.68uncharacterized protein LOC120077064 [Benincasa hispida][more]
XP_022136329.14.9e-1290.24uncharacterized protein LOC111008041 [Momordica charantia][more]
XP_023530195.19.3e-1185.37uncharacterized protein LOC111792833 [Cucurbita pepo subsp. pepo][more]
XP_022930654.19.3e-1185.37uncharacterized protein LOC111437056 [Cucurbita moschata] >KAG7022871.1 hypothet... [more]
KAG6589169.19.3e-1185.37Glutamate receptor 3.7, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
AT1G05205.15.8e-1175.61unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..62
NoneNo IPR availablePANTHERPTHR36706UNNAMED PRODUCTcoord: 35..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G014610.1Lsi11G014610.1mRNA