Lsi11G013930 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G013930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
Location	chr11: 22475432 .. 22477755 (-)
RNA-Seq Expression	Lsi11G013930
Synteny	Lsi11G013930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATCCCCCGTTTTCTGTAGCAGCGGCGGCAGGGTTTTAGCATTTCAATGCCCTAAATCTAAGACGGAACTCCGTTAGTTCATCGTGGCTGATTGCACATAATTTCTCTCCGAACTCTCAGATTTACCGATGGCTTCCTTCGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTACAACTCTTTTGAGCGTTGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCAATGCTTCTAAACGACCTTTCTCTCAGTGCTCTCTAAGGTAATTTTTTTCCTCACAAGCCTTTGATTTCGACGACAATGCAAATTAATTGTGGAAACTGTGTGTGTTGAGCTAAGATGCGTAGAAAAGTATTCCGAGTGTTCTCACAGGTGTTGTTTTCTTTTTTTCTCTTTCTTTATGAAGGATTCCGGTTGAAATGAGCTTCTGTGTGGAGTCCTTGATTCCATTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCAGTCCTTATTCTTCTAGTAGTTTCTAGGAATCGGACTAGTAGTTTCTAGAGTGAATTTTACTTTTTCCAATGTTCTTGTTATGCTGCCACTATGAAGGTTTCTGATTTCTTTTGTTCAAGAATTTGGATAGCTCCATTCTTGGCCCTACAACCGATCTAGTAGTTTCTAGAGTGAATTTTACCTTTTTCAATGTTCTTGGTTTCTGATTTCTTTTGTTCAAGAAATTGGATAGCTGCATTCTTGGCCGTATATTTTTGGCTCTACGCCGATGGAGGATAACATGTGATATACACAATTGACCCTATATTTTTTGCCTTTAGAATGCCGGATGAAAAGGAGGAGGATGAAATAGTGAAGAGAAGGCCCTATATATTAATATATTTCTTTTGACAAGAGGACAACTTTTCATTGATATTTGGAAAGTTACGAGAAACCAAACTCCTATTACAAACCTAACAAGGAGGGTAATTATAAGAGAAGAAGGTTTTATAATTCATTCCATCACGATTTAAATTTTTTTAACACAAAAATGGATAAAAATTCTCCATATAGTCTCCAACTAGTTCATCACAAATGCCCATATCAAACCAATACCAGTGTTTTGGGCTAAATGTATTTCCCTACTGTTTTTATAATCTAAAATGATCTTTTGGCTTGATAGAACAAACGTCTAATCCAGCCCCTTTTTTGCCTTTTCTGTATCAATGGATTATGAATTTGAGTTCATCTTAAGATAAAGATTAAATGCTAACATTCTGTGCTAGGGTCTAACTTTTAAGCGAAAGAAGTAACAAATCACTTCCCTCCCAGTGTAACTTGTGATTCAGTTCTTTATAAGTGATGCTTTTATGTTACAAGTCAAAACTATTTCATCCACATAATTGATATAAACGTGAGGATACTAATTGTGATGTTTAATCAGTGTTCAATGATGATGTGTGATGATGAATGGTCAAGGGGCGGGAAGTTTTGTGTGCAGAGTTCTACATTGTTGACAGTGGCCGCTGCTAAATTTCGCGAACTGATTCGCAGGGATTTGGTTTTCCATGTCTTGACTTTTTATGTCTTAGATTCTGAATTTGTGTAACTATAGACTACTAGAATGTATAGGAAGAGATTCACTGTAGACAGACATTTGAGTTTTGAATAGGAAGGCTTCAAGAAATTGAGTTCATGGAGTCATTATATTGAATTCCTTATAGGATTTTCTTGTAATAAGAGGAAGGGTTCTTTTTCTAGTAGTCTTTCTATATCTTGTATGTTTACTCTATGTCTATCATTACTCAGGCTATGAACGTACTTCATAGTTCTGATGGATGCTTGTGTTTTATGACTACGAAATTTGTTAGATTACTGACTATATGAACTCGAAAAGATTTATTAAATACAAAGCCTTTTAATAGATGTATTGCACAATGTTAACACCATTTAATATCTATTTGGCAGTGACTGGCTTGCAAACTTCATGATATATGATGATTGGAAAAAGTTTGGCCACCTGGGTAACATATTCACCCATGTAATCTTCGACTGCAACCTGGGTTTAAGCCGGACATGGCTATCTTATATTTTGAATTTAATTTCCTCAAGCATATGGTTGATATTCTCCAAGGAAACATAAGTAACAACCATTTTTCCCCTCCATATTCTCCAACTTATTCTCTAGTAAATGACGAAATACTAGGATTGCCTTGTTCTGGTTTATAATGCTTACGATATGGTTTATTTAGGTTAGAACATTGACCAATGCATTGGCTCGATTTTTCTTTTTCC

mRNA sequence

AAAAAAATCCCCCGTTTTCTGTAGCAGCGGCGGCAGGGTTTTAGCATTTCAATGCCCTAAATCTAAGACGGAACTCCGTTAGTTCATCGTGGCTGATTGCACATAATTTCTCTCCGAACTCTCAGATTTACCGATGGCTTCCTTCGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTACAACTCTTTTGAGCGTTGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCAATGCTTCTAAACGACCTTTCTCTCAGTGCTCTCTAAGGATTCCGGTTGAAATGAGCTTCTGTGTGGAGTCCTTGATTCCATTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTTGTTCAATGATGATGTGTGATGATGAATGGTCAAGGGGCGGGAAGTTTTGTGTGCAGAGTTCTACATTGTTGACAGTGGCCGCTGCTAAATTTCGCGAACTGATTCGCAGGGATTTGGTTTTCCATGTCTTGACTTTTTATGTCTTAGATTCTGAATTTGTGTAACTATAGACTACTAGAATGTATAGGAAGAGATTCACTGTAGACAGACATTTGAGTTTTGAATAGGAAGGCTTCAAGAAATTGAGTTCATGGAGTCATTATATTGAATTCCTTATAGGATTTTCTTGTAATAAGAGGAAGGGTTCTTTTTCTAGTAGTCTTTCTATATCTTGTATGTTTACTCTATGTCTATCATTACTCAGGCTATGAACGTACTTCATAGTTCTGATGGATGCTTGTGTTTTATGACTACGAAATTTGTTAGATTACTGACTATATGAACTCGAAAAGATTTATTAAATACAAAGCCTTTTAATAGATGTATTGCACAATGTTAACACCATTTAATATCTATTTGGCAGTGACTGGCTTGCAAACTTCATGATATATGATGATTGGAAAAAGTTTGGCCACCTGGGTAACATATTCACCCATGTAATCTTCGACTGCAACCTGGGTTTAAGCCGGACATGGCTATCTTATATTTTGAATTTAATTTCCTCAAGCATATGGTTGATATTCTCCAAGGAAACATAAGTAACAACCATTTTTCCCCTCCATATTCTCCAACTTATTCTCTAGTAAATGACGAAATACTAGGATTGCCTTGTTCTGGTTTATAATGCTTACGATATGGTTTATTTAGGTTAGAACATTGACCAATGCATTGGCTCGATTTTTCTTTTTCC

Coding sequence (CDS)

ATGGCTTCCTTCGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTACAACTCTTTTGAGCGTTGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCAATGCTTCTAAACGACCTTTCTCTCAGTGCTCTCTAAGGATTCCGGTTGAAATGAGCTTCTGTGTGGAGTCCTTGATTCCATTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTTGTTCAATGATGATGTGTGATGATGAATGGTCAAGGGGCGGGAAGTTTTGTGTGCAGAGTTCTACATTGTTGACAGTGGCCGCTGCTAAATTTCGCGAACTGATTCGCAGGGATTTGGTTTTCCATGTCTTGACTTTTTATGTCTTAGATTCTGAATTTGTGTAA

Protein sequence

MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESLIPFHSATSSALMTSMLSCSMMMCDDEWSRGGKFCVQSSTLLTVAAAKFRELIRRDLVFHVLTFYVLDSEFV

Homology

[Close]

BLAST of Lsi11G013930 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 6  ARAIFRSSSGKATTLLSVGARAAPARSP---FRNASKRPFSQCSLRIPVEMSFCVESLIP 65
          AR++ R++S ++    S G  A+ A+S    FR  ++R      LR PVE+SFCVESL+P
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSCS 80
          +HSAT+SALMTS LS S
Sbjct: 70 YHSATASALMTSKLSIS 85

[Close]

BLAST of Lsi11G013930 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFAARAIFRSSSGKA TLLS GARAAPARSPFR ASKRPFS  S RIP+EMSFCVES+
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALMTSMLS S
Sbjct: 61 LPFHSATSSALMTSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFAARAIFRSSSGKA TLLS GARAAPARSPFR ASKRPFS  S RIP+EMSFCVES+
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALMTSMLS S
Sbjct: 61 LPFHSATSSALMTSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFAARAIFRSSSGK  TLLS GARAAPARSPFR ASKRPFS  S RIP+EMSFCVES+
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALMTSMLS S
Sbjct: 61 LPFHSATSSALMTSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. ExPASy TrEMBL
Match: A0A1S3C9E2 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-25
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFAARAIFRSSSGK  TLLS GARAAPARSPFR ASKRPFS  S RIP+EMSFCVES+
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALMTSMLS S
Sbjct: 61 LPFHSATSSALMTSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. ExPASy TrEMBL
Match: A0A0A0KVK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 7.8e-25
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFAAR+IFRSSS KA TLLS GARAAPA SPFR ASKRPFS CS R+P+E+SFCVES+
Sbjct: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALMTSMLS S
Sbjct: 61 LPFHSATSSALMTSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. NCBI nr
Match: XP_038887457.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFA RAIFRSSSGKA TLLSVGARAAPARSPFR ASKRPFSQCS+RIPVEMSFCVES+
Sbjct: 1  MASFAGRAIFRSSSGKAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALM SMLS S
Sbjct: 61 LPFHSATSSALMISMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. NCBI nr
Match: XP_038887456.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFA RAIFRSSSGKA TLLSVGARAAPARSPFR ASKRPFSQCS+RIPVEMSFCVES+
Sbjct: 1  MASFAGRAIFRSSSGKAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALM SMLS S
Sbjct: 61 LPFHSATSSALMISMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-27
Identity = 71/79 (89.87%), Postives = 74/79 (93.67%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFA RAIFRSSSGKA TLLSVGARAAPARSPFR ASKRPFSQCS+RIPVEMSFCVES+
Sbjct: 1  MASFAGRAIFRSSSGKAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALM SMLS S
Sbjct: 61 LPFHSATSSALMISMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. NCBI nr
Match: KAA0039497.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFAARAIFRSSSGKA TLLS GARAAPARSPFR ASKRPFS  S RIP+EMSFCVES+
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALMTSMLS S
Sbjct: 61 LPFHSATSSALMTSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. NCBI nr
Match: TYK15251.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 69/79 (87.34%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 1  MASFAARAIFRSSSGKATTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESL 60
          MASFAARAIFRSSSGKA TLLS GARAAPARSPFR ASKRPFS  S RIP+EMSFCVES+
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 IPFHSATSSALMTSMLSCS 80
          +PFHSATSSALMTSMLS S
Sbjct: 61 LPFHSATSSALMTSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 5  AARAIFRSSSGKA--TTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESLIP 64
          AAR++FRS  G+A    L S     + ARS F+   + P S    R PVE+S CVE+++P
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSCS 80
          +H+AT+SAL+ SMLS S
Sbjct: 63 YHTATASALLNSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 5  AARAIFRSSSGKA--TTLLSVGARAAPARSPFRNASKRPFSQCSLRIPVEMSFCVESLIP 64
          AAR++FRS  G+A    L S     + ARS F+   + P S    R PVE+S CVE+++P
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSCS 80
          +H+AT+SAL+ SMLS S
Sbjct: 63 YHTATASALLNSMLSVS 79

[Close]

BLAST of Lsi11G013930 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  AARAIFRSSSGKATTL---LSVGARAAP--ARSPFRNASKRPFSQCSLRIPVEMSFCVES 64
          AAR++FRS++ +A++     S G +  P  AR+ FR   + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 LIPFHSATSSALMTSMLSCS 80
          ++P+H+AT+SAL+ SMLS S
Sbjct: 63 MLPYHTATASALLNSMLSVS 82

[Close]

BLAST of Lsi11G013930 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  AARAIFRSSSGKATTL---LSVGARAAP--ARSPFRNASKRPFSQCSLRIPVEMSFCVES 64
          AAR++FRS++ +A++     S G +  P  AR+ FR   + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 LIPFHSATSSALMTSMLSCS 80
          ++P+H+AT+SAL+ SMLS S
Sbjct: 63 MLPYHTATASALLNSMLSVS 82

[Close]

BLAST of Lsi11G013930 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.0e-09
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  AARAIFRSSSGKATTL---LSVGARAAP--ARSPFRNASKRPFSQCSLRIPVEMSFCVES 64
          AAR++FRS++ +A++     S G +  P  AR+ FR   + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 LIPFHSATSSALMTSMLSCS 80
          ++P+H+AT+SAL+ SMLS S
Sbjct: 63 MLPYHTATASALLNSMLSVS 82

The following BLAST results are available for this feature:

BLAST of Lsi11G013930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	1.1e-07	49.35	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Lsi11G013930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTR8	5.4e-26	87.34	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7TDD1	5.4e-26	87.34	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S3CB40	1.6e-25	86.08	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A1S3C9E2	1.6e-25	86.08	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A0A0KVK4	7.8e-25	82.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1	[more]

BLAST of Lsi11G013930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887457.1	5.9e-27	89.87	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa his...	[more]
XP_038887456.1	5.9e-27	89.87	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X2 [Benincasa his...	[more]
XP_038887455.1	5.9e-27	89.87	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa his...	[more]
KAA0039497.1	1.1e-25	87.34	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]	[more]
TYK15251.1	1.1e-25	87.34	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi11G013930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33847.1	1.2e-09	46.75	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT2G33847.2	1.2e-09	46.75	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT1G28395.2	2.0e-09	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	2.0e-09	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	2.0e-09	43.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..81
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G013930.1	Lsi11G013930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy
cellular_component	GO:0016021	integral component of membrane