Lsi11G013390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G013390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	transmembrane emp24 domain-containing protein p24beta2
Location	chr11: 22016874 .. 22021013 (+)
RNA-Seq Expression	Lsi11G013390
Synteny	Lsi11G013390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATATTTTGATTTCTCACATTAATCGAACTCCCAACTGCGCCACCGCCCGTTTTGACCTTGTTCTGATCTCAGATCAAATAACCCTTTAACTTATTCTAATTCTCAGATTCTCTCTTCCTCCAATTGGCGGCAACTGTTTGTTCATCCCCTCATTCTCTAAATTTTGAGGTAATTTACATACCCTTTTGTTTCTTCTTTCGTTTTGTTCATTACAGATCGTGAAGATTTGACTTTATTTTGTACGATTCTTGTTATTTTCCATATGGGTCTGTGATTTTTGAAGCAATGGAGCGATGGGCTATGAGATTTGTGGTGATGATGGCGTTTGTTGGGGTATTGCTGTTGAATTTGAGAAAATCAGAAGGAATTAGGTTTGTGATAGACAGGGAAGAATGTTTCTCTCACAATGTTCAATACGAGGGAGATACTGTTCATGTTTCTTTTGTCGTAATCAAGGCAGATTCACCTTGGCACTATGGCGATGATGGAGTTGATCTTGTGGTAACATTCTTTCACTTCCCTTTGTTTTGTTTTCCTTTTCACTAATAGAATTTGAAACTAGGCAAGCAAGATTCATGGGTTTTTTTGTGTGTTTCATAATTCTTTGTTAAGTGCCTTTCTTGATTCTTCTTTGTAGAAGAGATGGTTAGTTTTTGTGTTGTTTTTACTTTTGAGATGCTTTGGTTTGACTGAGAGAGAGAGACCTCCTAATGAATGATACAAGTCGTTACTTTGTTTTGGGGTGTTAGAAGACTACTACTAAAACTAGGATGAGCAGGGATTGATCTTTGTGCAAGAGGTGGTTAGTTTTACTTTTTAGATTGTTTCTTTGAACTCAAGGACATGGTTCTACAACCTATAGAACAAATCCTATTCAAGTAATTTCGTAGTTTTTAGGTTGTTTCTTGAAGCTCCTAATGATAATAGTTAGACTTAGTTCTTGGGGTGTTAGAAGCCTTATACAATAGAATGGACAGAGACTTATTTTAGTATAGGAGGTGGTTAGTTTTAAGTCATTTGTGTGGAGATGCTTTGATTTGGAGAGAGAGAGAGAGAGAGAGAGAGCCAGACAACCTCCTAATGATATTTACTTCTTAGTTCTTGGGTTGCTATTAGAAACTGATGCTGAAACTAGAATGGGCCGAGATTTATCTTAGTAGTGAAGGTGGTTAATTTTGTGGAGATGCTTCGATTTGGAGAGCGACAAAATTCTATTCTACTTTGTTCTTGAAGTGGGAAGAGGATAATTACTTAAACTAGAATGAGTAGAGACTTATCATAGTACAAGAGGTGGTTAGTCTTTTAAGTTAATTTTTGGAGATGCTTTGATTTGTAATAGGTAGGAAAGGAGGTAGAGAAAAATTCAAATGATAAAAATTATGTTTTTAATGTCTTTGCTAAGTAAATTATACTGTAGGGTCTGTAAAGGCTCATCTTTTTTATTTAGTTCTGTGTCACTGAGAATATAAAATTCCAAAAGCTTCTACTTCATATTAATTAATCAACTTCACCTCTGAAGGTGCCCAATCTTATTTCTTATTCTACGTCACCCATCAGATAGTATTTCTGATACATTCTTAGGGACTGTTGTTGGGGGAAAGAAAGTCCAGCTAGAGATAAATGTAAATAACTTGAAAATCTTTTGAGAGACTATAAAATCTATGGGATTGGGTTGTGTTATACTTATACATAGGCCTCATTTCTTCCTTAGAATCTGTAATCGTAGTCCTTTGTGTACTACATAGTCAAGAAGCCTTTGGACATATGCATTGAAGTTGAGTTGATTATTTTCTAGATGATTTAGCAGTTATTGCTGCGCATAGAGACTCTAGAGACTATGTTAGGATACCTTCTAACAAGAGAACTCAAGAACACACAAGAACAATAAAAGATAGAATTATATTGCAATATCAATGAAGAAATTACAATATACCTCAGCACATTCTAGAGGGCTGAGACTCCTCTCCCCAAATTCCCAATTAGGAAATCGCACAAAATTCTTCACCCCCCACTCTCAAACCATTCCCTCTATTTATAACTAAAAGACCTAACCAACTTTATGTCTAAATACCATAATACCCCTAACTACTAATCATACTAATTACTCCTATATATTCCTAACTAGGAGCCTTACAGACTATATCAGGGATTTTTCTCTTCTTATGGAGTTCTTATTATGGGATTTGATTTGAGACCCTTGTGTTATTTTCTTTTCGTTGGTAGAATTTGCTGTTAATTCAATATTTTTTTTGAAATCTAGATAAAAGGCCCTTCTGGCGAACATCTTCATGATTTCCGTGACAAAACTAGTGAAAAGCATGATTTTATTGCTCACAACAAAGGTCTTCATCGATTCTGCTTCACGAACAAGTCTCCATATCATGAAACCATCGACTTTGATGTGCACGTTGGCCACTTTTCTTATCACGAGCAGCATGCAAAAGATGGTAATATGCCATTTCCCTGTTTTATTTTGTACTGACCTTCTTTCACAAGTTAAAAATCAATCTCAAAACTGGTGCATATGCGTGCAGAGCATTTCAACCCTTTGCTGGATCAAATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAGCATTGGTTAGAGGCTCAGACTGATCGCCAGGCAATAGGTAATGTTAACAAACCTGTCTCGAGCTTGAATAATTTCCATGATATCAGCTTAGGAATTTAATTTCTTTGTTGAAGTTATTCCTTGATGACATTGTCATCAAGTAGCTTCCAAATCTAAAAACATTGTCATTAATTAAGTGAACTCTAAACCATCATGGGTTGACCTAGTGGTAAAAAAGGAGACAAAGTCTCAATATATGGCTAAGAGGTCATGGGTTCAATCCATGGTGACCACCTACCTAAGAATAAATTTCCTATGAGTTTCCTTAACACTCAAATTAAGTGAACTCTGCAAAAAGAAGTTTTGCAAAAAGAAGTTTTAGGCATTATTCAAGCACCAATGATCATGATAGTAACTTTCTTCTTCATTATTCAAGCACCAATGATCATGTTAGAATTAGGGGTGTAATGGCATTTTCTGGAAATTAGACTACTTACATGTGTAAGTGAATGATTTCTGAGACCTCGTTTGAAAACCATTTGATTTTTTGTTTTTGGTTTTGTGAAAATTGAGCTTATAAACCCGACTTCTACTCATAAGTTTCTATGTTTTGTTATTCACTTTCTACCAATGTTTTGAAAATTGAGCTTATAAACCCGACTTCTACTCAAAAGTAGTTTTCAAAAACGTGTTTTCATTTTTAGAATTTGACTAGTATTTCAAGTTTCTCTTCAACAAAGGTGAAAAGCATAATCATAAAATTGGGAAGAAACAAACATAAATTTTAAAAAATAAAAACTAAAAGTGAAGTTGTTACCAAATGGGGCCTTAGGTGTTGTTTGGGACCTTCAAATGTTCTAAAGGTTGAACAATAGAATGACTTCAAAAAACTTCGGATCTAACCCAGTTGAGTTGCTCAAATTACATTAGACGATAGATCCAACCTAACCGAACCTTTATGGCTCGGGTTGAGTTGATTGAGTTTGTTTTTTCTTTTGTACACTTTTAGCTTAGTCCATAAAAGCTGGGTGTCTTAAAGGTATCCAGCCAAAAAAACCTCCACAATTAGAACTTGGTCGCATTTCCTGTTCGATCTCGATTCTGACTGTTTAACGGCTCTGCCGATCTGAATGACGAAAAGGCGTCATGATGTGATTTTGTGGTATGGTTTTGATTGCAGTGAATGATGGAATGAGCAAAAGGGCAATCCATAAGGCAATGTTTGAATCAGCAGCACTGGTAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTTGGGACATCCAGAGTTTAATGGAAACAAATAGAAAGTATACAAGCAACCATCACTTTCCCTTCTTTTTCTATTTATTATGGTTTAATCATTCTGTAATCTTTTTCCCACATATGATGATAATATACTAGTTGCTTTTAATATAAAATTTTCTTCTCCTTGTTTTGTTTGGTTTAATAGGTTTAATCATTTGAGCTATGATCAAATTGAGAATTTTAAGGCTAATTTTGTTGATCGAAAATTATATTTATTTAAGCAAA

mRNA sequence

AAAATATTTTGATTTCTCACATTAATCGAACTCCCAACTGCGCCACCGCCCGTTTTGACCTTGTTCTGATCTCAGATCAAATAACCCTTTAACTTATTCTAATTCTCAGATTCTCTCTTCCTCCAATTGGCGGCAACTGTTTGTTCATCCCCTCATTCTCTAAATTTTGAGCAATGGAGCGATGGGCTATGAGATTTGTGGTGATGATGGCGTTTGTTGGGGTATTGCTGTTGAATTTGAGAAAATCAGAAGGAATTAGGTTTGTGATAGACAGGGAAGAATGTTTCTCTCACAATGTTCAATACGAGGGAGATACTGTTCATGTTTCTTTTGTCGTAATCAAGGCAGATTCACCTTGGCACTATGGCGATGATGGAGTTGATCTTGTGATAAAAGGCCCTTCTGGCGAACATCTTCATGATTTCCGTGACAAAACTAGTGAAAAGCATGATTTTATTGCTCACAACAAAGGTCTTCATCGATTCTGCTTCACGAACAAGTCTCCATATCATGAAACCATCGACTTTGATGTGCACGTTGGCCACTTTTCTTATCACGAGCAGCATGCAAAAGATGAGCATTTCAACCCTTTGCTGGATCAAATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAGCATTGGTTAGAGGCTCAGACTGATCGCCAGGCAATAGTGAATGATGGAATGAGCAAAAGGGCAATCCATAAGGCAATGTTTGAATCAGCAGCACTGGTAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTTGGGACATCCAGAGTTTAATGGAAACAAATAGAAAGTATACAAGCAACCATCACTTTCCCTTCTTTTTCTATTTATTATGGTTTAATCATTCTGTAATCTTTTTCCCACATATGATGATAATATACTAGTTGCTTTTAATATAAAATTTTCTTCTCCTTGTTTTGTTTGGTTTAATAGGTTTAATCATTTGAGCTATGATCAAATTGAGAATTTTAAGGCTAATTTTGTTGATCGAAAATTATATTTATTTAAGCAAA

Coding sequence (CDS)

ATGGAGCGATGGGCTATGAGATTTGTGGTGATGATGGCGTTTGTTGGGGTATTGCTGTTGAATTTGAGAAAATCAGAAGGAATTAGGTTTGTGATAGACAGGGAAGAATGTTTCTCTCACAATGTTCAATACGAGGGAGATACTGTTCATGTTTCTTTTGTCGTAATCAAGGCAGATTCACCTTGGCACTATGGCGATGATGGAGTTGATCTTGTGATAAAAGGCCCTTCTGGCGAACATCTTCATGATTTCCGTGACAAAACTAGTGAAAAGCATGATTTTATTGCTCACAACAAAGGTCTTCATCGATTCTGCTTCACGAACAAGTCTCCATATCATGAAACCATCGACTTTGATGTGCACGTTGGCCACTTTTCTTATCACGAGCAGCATGCAAAAGATGAGCATTTCAACCCTTTGCTGGATCAAATATCTAAGTTGGAGGAAGCTCTTTACAATATTCAGTTTGAACAGCATTGGTTAGAGGCTCAGACTGATCGCCAGGCAATAGTGAATGATGGAATGAGCAAAAGGGCAATCCATAAGGCAATGTTTGAATCAGCAGCACTGGTAGGGGCCAGTGTCCTCCAAGTCTACTTGCTGCAGCGCTTGTTTGAAAGGAAGCTTGGGACATCCAGAGTTTAA

Protein sequence

MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADSPWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAIHKAMFESAALVGASVLQVYLLQRLFERKLGTSRV

Homology

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BLAST of Lsi11G013390 vs. ExPASy Swiss-Prot
Match: Q9S7M9 (Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana OX=3702 GN=At3g07680 PE=1 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 3.0e-87
Identity = 150/197 (76.14%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 18  LLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADSPWHYGDDGVDLVIKGPS 77
           LL + + + GIRFVIDREECFSH  +YEGDT+HVSFVVIK+DS WH+ +DGVDLVI GP+
Sbjct: 12  LLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPT 71

Query: 78  GEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHF 137
           GE +HDFR++ S KHDF+   KG++RFCFTNKSPYHETIDFDV +GHF+Y++QHAKDEHF
Sbjct: 72  GEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHF 131

Query: 138 NPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAIHKAMFESAALVGASVLQ 197
            PL++QISKLEEALYNIQFEQHWLEAQTDRQAIVN+ MSKRA+HKA+FES AL+GAS LQ
Sbjct: 132 TPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQ 191

Query: 198 VYLLQRLFERKLGTSRV 215
           VYLL+RLFERKLG SRV
Sbjct: 192 VYLLRRLFERKLGMSRV 208

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BLAST of Lsi11G013390 vs. ExPASy Swiss-Prot
Match: Q9LIL4 (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-27
Identity = 73/215 (33.95%), Postives = 116/215 (53.95%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLN-LRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKAD 60
           MER   +  V +  +G++LLN + +   +   ++ EEC    V YEGDTV  +FVV+  D
Sbjct: 1   MERRQAKIHVFV-LIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 60

Query: 61  SPWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFD 120
             W     G+D  +  P+G  +   +  + +K +F A   G+++FCF N     ET+ F 
Sbjct: 61  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 120

Query: 121 VHVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRA 180
           +HVGH       AKDEH +P+  +I++L EAL ++  EQ +L+A+  R    N+   KR 
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 180

Query: 181 IHKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           I   + E   L  AS LQV  +++LF + +  +RV
Sbjct: 181 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

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BLAST of Lsi11G013390 vs. ExPASy TrEMBL
Match: A0A5D3D6W7 (Emp24/gp25L/p24 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00310 PE=3 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 1.7e-117
Identity = 210/214 (98.13%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSH VQYEGDTVHVSFVVIKADS
Sbjct: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHQVQYEGDTVHVSFVVIKADS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
           PWHYGDDGVDLVIKGP+GEHLHDFRDKTSEKH+FIAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPTGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPL+DQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

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BLAST of Lsi11G013390 vs. ExPASy TrEMBL
Match: A0A0A0K541 (GOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031630 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.1e-116
Identity = 207/214 (96.73%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMRFV+MMAFVGVLLL+LRKSEGIRFVIDREECFSH+VQYEGDTVHVSFVVIKADS
Sbjct: 1   MERWAMRFVMMMAFVGVLLLSLRKSEGIRFVIDREECFSHHVQYEGDTVHVSFVVIKADS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
           PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKH+FIAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPL+DQISKLEEALYNIQFEQHWLEAQTDRQAIVN+GM KRAI
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMGKRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

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BLAST of Lsi11G013390 vs. ExPASy TrEMBL
Match: A0A6J1HZG1 (transmembrane emp24 domain-containing protein p24beta2 OS=Cucurbita maxima OX=3661 GN=LOC111468315 PE=3 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 4.3e-113
Identity = 203/214 (94.86%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMR VVMMAF GVLLLNLR+SEG+RFVIDREECFSHNVQY+GDTVHVSFVVIK DS
Sbjct: 1   MERWAMRRVVMMAFAGVLLLNLRQSEGLRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGPSGEHLHDFRDK SEKH+FIAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGDDGVDLVIKGPSGEHLHDFRDKASEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

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BLAST of Lsi11G013390 vs. ExPASy TrEMBL
Match: A0A6J1GLY5 (transmembrane emp24 domain-containing protein p24beta2-like OS=Cucurbita moschata OX=3662 GN=LOC111455579 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.6e-112
Identity = 201/214 (93.93%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMR VVMMAF GVLLLNLR+SEGIRFVIDREECFSHNVQY+GDTVHVSFVVIK DS
Sbjct: 1   MERWAMRCVVMMAFAGVLLLNLRQSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
            WHYG+DGVDLVIKGPSGEHLHD RDK SEKH+F+AHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGEDGVDLVIKGPSGEHLHDIRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]

BLAST of Lsi11G013390 vs. ExPASy TrEMBL
Match: A0A6J1C720 (transmembrane emp24 domain-containing protein p24beta2 OS=Momordica charantia OX=3673 GN=LOC111007967 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.2e-112
Identity = 200/214 (93.46%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAM    MMAF GV LL++R+SEGIRFVIDREECFSHNVQY+GDTVHVSFVVIKADS
Sbjct: 1   MERWAM----MMAFAGVFLLSMRRSEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKADS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
           PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKH+F+AHNKG+HRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFVAHNKGIHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMS+RAI
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSRRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 210

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BLAST of Lsi11G013390 vs. NCBI nr
Match: XP_038887290.1 (transmembrane emp24 domain-containing protein p24beta2 [Benincasa hispida])

HSP 1 Score: 434.5 bits (1116), Expect = 5.3e-118
Identity = 212/214 (99.07%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMRFVVMMAFVGVLLLNLR+SEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS
Sbjct: 1   MERWAMRFVVMMAFVGVLLLNLRESEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
           PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKH+FIAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Lsi11G013390 vs. NCBI nr
Match: KAA0059209.1 (emp24/gp25L/p24 family protein [Cucumis melo var. makuwa] >TYK19311.1 emp24/gp25L/p24 family protein [Cucumis melo var. makuwa])

HSP 1 Score: 431.8 bits (1109), Expect = 3.5e-117
Identity = 210/214 (98.13%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSH VQYEGDTVHVSFVVIKADS
Sbjct: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHQVQYEGDTVHVSFVVIKADS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
           PWHYGDDGVDLVIKGP+GEHLHDFRDKTSEKH+FIAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPTGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPL+DQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Lsi11G013390 vs. NCBI nr
Match: XP_004144551.1 (transmembrane emp24 domain-containing protein p24beta2 [Cucumis sativus] >KGN43402.1 hypothetical protein Csa_020232 [Cucumis sativus])

HSP 1 Score: 427.2 bits (1097), Expect = 8.5e-116
Identity = 207/214 (96.73%), Postives = 213/214 (99.53%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMRFV+MMAFVGVLLL+LRKSEGIRFVIDREECFSH+VQYEGDTVHVSFVVIKADS
Sbjct: 1   MERWAMRFVMMMAFVGVLLLSLRKSEGIRFVIDREECFSHHVQYEGDTVHVSFVVIKADS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
           PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKH+FIAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPL+DQISKLEEALYNIQFEQHWLEAQTDRQAIVN+GM KRAI
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLMDQISKLEEALYNIQFEQHWLEAQTDRQAIVNEGMGKRAI 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 214

[Close]

BLAST of Lsi11G013390 vs. NCBI nr
Match: XP_022969260.1 (transmembrane emp24 domain-containing protein p24beta2 [Cucurbita maxima] >XP_022969261.1 transmembrane emp24 domain-containing protein p24beta2 [Cucurbita maxima])

HSP 1 Score: 417.2 bits (1071), Expect = 8.8e-113
Identity = 203/214 (94.86%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMR VVMMAF GVLLLNLR+SEG+RFVIDREECFSHNVQY+GDTVHVSFVVIK DS
Sbjct: 1   MERWAMRRVVMMAFAGVLLLNLRQSEGLRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
            WHYGDDGVDLVIKGPSGEHLHDFRDK SEKH+FIAHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGDDGVDLVIKGPSGEHLHDFRDKASEKHEFIAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]

BLAST of Lsi11G013390 vs. NCBI nr
Match: XP_023554617.1 (transmembrane emp24 domain-containing protein p24beta2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.4 bits (1069), Expect = 1.5e-112
Identity = 202/214 (94.39%), Postives = 208/214 (97.20%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADS 60
           MERWAMR VVMMAF GVLLLNLR+SEGIRFVIDREECFSHNVQY+GDTVHVSFVVIK DS
Sbjct: 1   MERWAMRCVVMMAFAGVLLLNLRESEGIRFVIDREECFSHNVQYDGDTVHVSFVVIKTDS 60

Query: 61  PWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDV 120
            WHYG+DGVDLVIKGPSGEHLHDFRDK SEKH+F+AHNKGLHRFCFTNKSPYHETIDFDV
Sbjct: 61  GWHYGEDGVDLVIKGPSGEHLHDFRDKASEKHEFVAHNKGLHRFCFTNKSPYHETIDFDV 120

Query: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAI 180
           HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRA+
Sbjct: 121 HVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAV 180

Query: 181 HKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           HKAMFESAALVGASVLQVYLLQRLFERKL TSRV
Sbjct: 181 HKAMFESAALVGASVLQVYLLQRLFERKLRTSRV 214

[Close]

BLAST of Lsi11G013390 vs. TAIR 10
Match: AT3G07680.1 (emp24/gp25L/p24 family/GOLD family protein )

HSP 1 Score: 322.8 bits (826), Expect = 2.1e-88
Identity = 150/197 (76.14%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 18  LLLNLRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKADSPWHYGDDGVDLVIKGPS 77
           LL + + + GIRFVIDREECFSH  +YEGDT+HVSFVVIK+DS WH+ +DGVDLVI GP+
Sbjct: 12  LLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVIHGPT 71

Query: 78  GEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFDVHVGHFSYHEQHAKDEHF 137
           GE +HDFR++ S KHDF+   KG++RFCFTNKSPYHETIDFDV +GHF+Y++QHAKDEHF
Sbjct: 72  GEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAKDEHF 131

Query: 138 NPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRAIHKAMFESAALVGASVLQ 197
            PL++QISKLEEALYNIQFEQHWLEAQTDRQAIVN+ MSKRA+HKA+FES AL+GAS LQ
Sbjct: 132 TPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGASFLQ 191

Query: 198 VYLLQRLFERKLGTSRV 215
           VYLL+RLFERKLG SRV
Sbjct: 192 VYLLRRLFERKLGMSRV 208

[Close]

BLAST of Lsi11G013390 vs. TAIR 10
Match: AT3G22845.1 (emp24/gp25L/p24 family/GOLD family protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-28
Identity = 73/215 (33.95%), Postives = 116/215 (53.95%), Query Frame = 0


Query: 1   MERWAMRFVVMMAFVGVLLLN-LRKSEGIRFVIDREECFSHNVQYEGDTVHVSFVVIKAD 60
           MER   +  V +  +G++LLN + +   +   ++ EEC    V YEGDTV  +FVV+  D
Sbjct: 1   MERRQAKIHVFV-LIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHD 60

Query: 61  SPWHYGDDGVDLVIKGPSGEHLHDFRDKTSEKHDFIAHNKGLHRFCFTNKSPYHETIDFD 120
             W     G+D  +  P+G  +   +  + +K +F A   G+++FCF N     ET+ F 
Sbjct: 61  IFWGSDHPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFY 120

Query: 121 VHVGHFSYHEQHAKDEHFNPLLDQISKLEEALYNIQFEQHWLEAQTDRQAIVNDGMSKRA 180
           +HVGH       AKDEH +P+  +I++L EAL ++  EQ +L+A+  R    N+   KR 
Sbjct: 121 IHVGHIPNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRV 180

Query: 181 IHKAMFESAALVGASVLQVYLLQRLFERKLGTSRV 215
           I   + E   L  AS LQV  +++LF + +  +RV
Sbjct: 181 IFYTVGEYIFLAAASGLQVLYIRKLFSKSVAYNRV 214

The following BLAST results are available for this feature:

BLAST of Lsi11G013390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7M9	3.0e-87	76.14	Transmembrane emp24 domain-containing protein p24beta2 OS=Arabidopsis thaliana O...	[more]
Q9LIL4	1.5e-27	33.95	Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana O...	[more]

BLAST of Lsi11G013390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D6W7	1.7e-117	98.13	Emp24/gp25L/p24 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0K541	4.1e-116	96.73	GOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G031630 PE=3 S...	[more]
A0A6J1HZG1	4.3e-113	94.86	transmembrane emp24 domain-containing protein p24beta2 OS=Cucurbita maxima OX=36...	[more]
A0A6J1GLY5	3.6e-112	93.93	transmembrane emp24 domain-containing protein p24beta2-like OS=Cucurbita moschat...	[more]
A0A6J1C720	6.2e-112	93.46	transmembrane emp24 domain-containing protein p24beta2 OS=Momordica charantia OX...	[more]

BLAST of Lsi11G013390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887290.1	5.3e-118	99.07	transmembrane emp24 domain-containing protein p24beta2 [Benincasa hispida]	[more]
KAA0059209.1	3.5e-117	98.13	emp24/gp25L/p24 family protein [Cucumis melo var. makuwa] >TYK19311.1 emp24/gp25...	[more]
XP_004144551.1	8.5e-116	96.73	transmembrane emp24 domain-containing protein p24beta2 [Cucumis sativus] >KGN434...	[more]
XP_022969260.1	8.8e-113	94.86	transmembrane emp24 domain-containing protein p24beta2 [Cucurbita maxima] >XP_02...	[more]
XP_023554617.1	1.5e-112	94.39	transmembrane emp24 domain-containing protein p24beta2 [Cucurbita pepo subsp. pe...	[more]

BLAST of Lsi11G013390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07680.1	2.1e-88	76.14	emp24/gp25L/p24 family/GOLD family protein	[more]
AT3G22845.1	1.1e-28	33.95	emp24/gp25L/p24 family/GOLD family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009038	GOLD domain	SMART	SM01190	EMP24_GP25L_2	coord: 27..206 e-value: 2.3E-38 score: 143.5
IPR009038	GOLD domain	PFAM	PF01105	EMP24_GP25L	coord: 34..206 e-value: 1.2E-30 score: 106.8
IPR009038	GOLD domain	PROSITE	PS50866	GOLD	coord: 35..122 score: 14.582626
IPR015720	Transmembrane emp24 domain-containing protein	PANTHER	PTHR22811	TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN	coord: 6..210
None	No IPR available	PANTHER	PTHR22811:SF167	TMP21-RELATED PROTEIN-RELATED	coord: 6..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G013390.1	Lsi11G013390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0030134	COPII-coated ER to Golgi transport vesicle
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane