Lsi11G012160 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTTTGATTCAATTCAAAGCAATGGCAGCCACTCTTTCCGTTCGCCCCAACCGTCTTTCCGCCGGCGCAGCCTTTCCTGCGCCGCCAGCTCACCGTCTCGGTTCGAACTTCATCGGAAAATCGAGTCCATGGAAAGGCTTTCGCATTTCACAAATCTCTCGAACGCCGGCGATGACGGCCACGCCGGTGCAAGCCAGCTCGAGAGCCGATGACTCTTCGCCGTTCGAGATGTCCGTGGAAAACGCTCTCAAGGTTCTCGGAGTTTCCGATGCGGCCTCGTTCGATGACATTCTTCGTGCTAGGAATTCGATTCTGGCCGCTTGCAAGGACGACCAAGAAACAGTGGCGCAGGTAGAAGGAGATTGATTTTTCTACTTCGTTTGGGGATTTTTGGTAAATTAGGGATCTAATTATTGCATCCCCTTTGATTTGAGTATTGGCATTCTGAATTTCGAAGTCCGATTGATTTGGTAATTATTCGTTGATCTTGGTGTTTTTTTCTTTCTTTTTGGTACATAATATGATCACCATTTGAATGTGTAGAACTTTCATTTTATTTTTACTACACTCTTTGGCTATTACCACTTTAGCTATTTGTACCTGTTTATTGTCAATTAATCTCTGACTCCGGCGACATGGTCCAATTTATGAAGCTCTGTACCTTTCCTTCTAATCCCATTTTTGTTTCTTTTGCCCTTGTTTTTATGCGCTGGAATTTAGAAGTGTGAGAAATGTTTTATTCATAAACTGTAAATTGAACCAGGCAAAAGGGAAGTAGAAGGAATTGGCGAGGCTAAGATGAAGAGTAAAGAAAACGTGCATGACTCTACAATTAGATTCGAACATTGTATTCAGATCCTTGTTACTACATGAGGAGGAAATTATGGTTTTGGACAAAATACTGTACATGGATTCTTAGATTTATTAAAATTCAGTTTTTATTTGTAACGGCACCGGAGATAAACTTATCAAAGTTGTTTCAGTTATAATGCTGCTGCAGGTTGAGTACAGTAGATTACCTCTGTTAACGTTTGTTCTTGAGCCTCTTTGATTTAGTTTTGTTCCATGATTGAAATTCAAGATCTGTTTTTTGCTATAATCTCAACCATTTGTGTTAGTCTTCAGTTCACTCATATATCTGGAACCATCTCTCTCCATTGTTGGTCATTGGTTCTGTTATGTGTTTTAGGTTGAGGCTGCATATGACATGTTGCTAATGCGGAGCTTGACTCAGCGACGAGCAGGAAAAGTTGTGAGTAGTGGGATCCTTTATGCTGATGTCAAACCCATCAATGAGCCAAAGACTCGCTTAATGCCTCAGTGGCTGCAGTCTACAAGGAAGAACACACAATTGTTTATTGAAACGCCAACCATTACTGATTTTGGCATACAAGCAGGCGTATATGGAGCTTTAATGGTTTTAACTTATGTAAATGGAGCAGCCACATCTCCTACGATGACATATGATGGGACTGATGTGCCTGGACTAATTTTAGCAACTAGCTTTGGAGCTTCCTTGTATTTCATGACCAAAAGGAACGTGAAGCTTGGTAAGGAGTTCTGCTAATGCTAATTTTTTATGCTTTTACTTCTTACAAGATTGAAAATATCTAAACCTTCACAAATTTGGAGAACAATTGAAGGAATTGCTCTGTTTTCTGCTTGCGGATACTGTTGAGGTTTTGTTAAATAAAACTTCAGTTATTGTTCTTTACTTGATTTTAGGAAGGGAGACTTTGATGGTTGAGGGGGAATAGGTTTTTCCCTCTATAAACCGGGTGTTTTTCCTTTTGAGTCAAAATTGTTAATGATATAATATTAAATTTACCTTTACCCATCAGTTTAAGCTTTTGGGTCTATCGGTGATTTAAGATGACATCAAAGCAAGTGGTCCAAGAAGTCCTGTATTCAAATTCTTGCAATGTCGGTAATTTAAGAAAAATATACTCTTTTATTCTACAAGTGATATTTAAACTATTTTTATTACATATATTCAAGAACTTTGACCTAAATGAAATGATTTTGATTCTTGTGCACAAAATAATCCTGAGAAATACAGATCTCACATCTTGGAGCCATATATAGATCGTGCAACTTCCATATGATAATATTTTCAATTAGCTATGCTGTTCTTCTTTGCAGGAAAAGCATCCATCATAGTCATAGGTGGCCTTGTGGCAGGTGCAGTAGTTGGTTCAGCAGTTGAGAATTGGTTGCAAGTAGACATCGTTCCTTTCTTCGGCTTACAATCTTCGGCCGCTCTGATAAGTGAATTTATCCTCCTCTCTCAATTTTTGGTCTCTCTTTACTTTGGTTAGGGATGAGATAGGCACTGGATTTAAAGTTAAAACTGCATAACAATGTAAATTCATTCACATGTTCATACGTTAGCATTTTTGAGGATGTGTATCATTGCATATTTGTACAAAGGGGAAACAGAATGACTCTTGTAATTTACCACTCATACAAAAATTCTTGACATAGTTATGAACAATTTACTTTTTAGGAAGTCTTCTGGTAGATGTCCATGTTAACTCTTTGTGAAGTGTTTGAAACTTATTAACTCAGTTAAGCTCTGTTTTATTTGGAAATTCTGAAACATGAAGAAATTCTGAAACATGAATAAACAGCCATCGACTCTGTTCAGTGCTCATTAGCTGTGTCTGCAATGCAAGATCCCAGATCGAGCTGTAGATTGTGGATGTGAAAAAATAGTCCAAAGTATAATATATAAG CATTTTGATTCAATTCAAAGCAATGGCAGCCACTCTTTCCGTTCGCCCCAACCGTCTTTCCGCCGGCGCAGCCTTTCCTGCGCCGCCAGCTCACCGTCTCGGTTCGAACTTCATCGGAAAATCGAGTCCATGGAAAGGCTTTCGCATTTCACAAATCTCTCGAACGCCGGCGATGACGGCCACGCCGGTGCAAGCCAGCTCGAGAGCCGATGACTCTTCGCCGTTCGAGATGTCCGTGGAAAACGCTCTCAAGGTTCTCGGAGTTTCCGATGCGGCCTCGTTCGATGACATTCTTCGTGCTAGGAATTCGATTCTGGCCGCTTGCAAGGACGACCAAGAAACAGTGGCGCAGGTTGAGGCTGCATATGACATGTTGCTAATGCGGAGCTTGACTCAGCGACGAGCAGGAAAAGTTGTGAGTAGTGGGATCCTTTATGCTGATGTCAAACCCATCAATGAGCCAAAGACTCGCTTAATGCCTCAGTGGCTGCAGTCTACAAGGAAGAACACACAATTGTTTATTGAAACGCCAACCATTACTGATTTTGGCATACAAGCAGGCGTATATGGAGCTTTAATGGTTTTAACTTATGTAAATGGAGCAGCCACATCTCCTACGATGACATATGATGGGACTGATGTGCCTGGACTAATTTTAGCAACTAGCTTTGGAGCTTCCTTGTATTTCATGACCAAAAGGAACGTGAAGCTTGGAAAAGCATCCATCATAGTCATAGGTGGCCTTGTGGCAGGTGCAGTAGTTGGTTCAGCAGTTGAGAATTGGTTGCAAGTAGACATCGTTCCTTTCTTCGGCTTACAATCTTCGGCCGCTCTGATAAGTGAATTTATCCTCCTCTCTCAATTTTTGGTCTCTCTTTACTTTGGTTAGGGATGAGATAGGCACTGGATTTAAAGTTAAAACTGCATAACAATGTAAATTCATTCACATGTTCATACGTTAGCATTTTTGAGGATGTGTATCATTGCATATTTGTACAAAGGGGAAACAGAATGACTCTTGTAATTTACCACTCATACAAAAATTCTTGACATAGTTATGAACAATTTACTTTTTAGGAAGTCTTCTGGTAGATGTCCATGTTAACTCTTTGTGAAGTGTTTGAAACTTATTAACTCAGTTAAGCTCTGTTTTATTTGGAAATTCTGAAACATGAAGAAATTCTGAAACATGAATAAACAGCCATCGACTCTGTTCAGTGCTCATTAGCTGTGTCTGCAATGCAAGATCCCAGATCGAGCTGTAGATTGTGGATGTGAAAAAATAGTCCAAAGTATAATATATAAG ATGGCAGCCACTCTTTCCGTTCGCCCCAACCGTCTTTCCGCCGGCGCAGCCTTTCCTGCGCCGCCAGCTCACCGTCTCGGTTCGAACTTCATCGGAAAATCGAGTCCATGGAAAGGCTTTCGCATTTCACAAATCTCTCGAACGCCGGCGATGACGGCCACGCCGGTGCAAGCCAGCTCGAGAGCCGATGACTCTTCGCCGTTCGAGATGTCCGTGGAAAACGCTCTCAAGGTTCTCGGAGTTTCCGATGCGGCCTCGTTCGATGACATTCTTCGTGCTAGGAATTCGATTCTGGCCGCTTGCAAGGACGACCAAGAAACAGTGGCGCAGGTTGAGGCTGCATATGACATGTTGCTAATGCGGAGCTTGACTCAGCGACGAGCAGGAAAAGTTGTGAGTAGTGGGATCCTTTATGCTGATGTCAAACCCATCAATGAGCCAAAGACTCGCTTAATGCCTCAGTGGCTGCAGTCTACAAGGAAGAACACACAATTGTTTATTGAAACGCCAACCATTACTGATTTTGGCATACAAGCAGGCGTATATGGAGCTTTAATGGTTTTAACTTATGTAAATGGAGCAGCCACATCTCCTACGATGACATATGATGGGACTGATGTGCCTGGACTAATTTTAGCAACTAGCTTTGGAGCTTCCTTGTATTTCATGACCAAAAGGAACGTGAAGCTTGGAAAAGCATCCATCATAGTCATAGGTGGCCTTGTGGCAGGTGCAGTAGTTGGTTCAGCAGTTGAGAATTGGTTGCAAGTAGACATCGTTCCTTTCTTCGGCTTACAATCTTCGGCCGCTCTGATAAGTGAATTTATCCTCCTCTCTCAATTTTTGGTCTCTCTTTACTTTGGTTAG MAATLSVRPNRLSAGAAFPAPPAHRLGSNFIGKSSPWKGFRISQISRTPAMTATPVQASSRADDSSPFEMSVENALKVLGVSDAASFDDILRARNSILAACKDDQETVAQVEAAYDMLLMRSLTQRRAGKVVSSGILYADVKPINEPKTRLMPQWLQSTRKNTQLFIETPTITDFGIQAGVYGALMVLTYVNGAATSPTMTYDGTDVPGLILATSFGASLYFMTKRNVKLGKASIIVIGGLVAGAVVGSAVENWLQVDIVPFFGLQSSAALISEFILLSQFLVSLYFG Homology
BLAST of Lsi11G012160 vs. ExPASy Swiss-Prot
Match: G5DBJ0 (Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CPP1 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08 Identity = 71/283 (25.09%), Postives = 122/283 (43.11%), Query Frame = 0
BLAST of Lsi11G012160 vs. ExPASy Swiss-Prot
Match: Q9FN50 (Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPP1 PE=1 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.6e-06 Identity = 63/271 (23.25%), Postives = 118/271 (43.54%), Query Frame = 0
BLAST of Lsi11G012160 vs. ExPASy TrEMBL
Match: A0A6J1C2Y7 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111007789 PE=4 SV=1) HSP 1 Score: 456.1 bits (1172), Expect = 1.1e-124 Identity = 241/288 (83.68%), Postives = 258/288 (89.58%), Query Frame = 0
BLAST of Lsi11G012160 vs. ExPASy TrEMBL
Match: A0A1S3BIJ0 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490266 PE=4 SV=1) HSP 1 Score: 450.7 bits (1158), Expect = 4.7e-123 Identity = 244/286 (85.31%), Postives = 256/286 (89.51%), Query Frame = 0
BLAST of Lsi11G012160 vs. ExPASy TrEMBL
Match: A0A1S4DWV9 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490266 PE=4 SV=1) HSP 1 Score: 414.1 bits (1063), Expect = 4.9e-112 Identity = 230/286 (80.42%), Postives = 241/286 (84.27%), Query Frame = 0
BLAST of Lsi11G012160 vs. ExPASy TrEMBL
Match: W9QWT4 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006058 PE=4 SV=1) HSP 1 Score: 379.4 bits (973), Expect = 1.3e-101 Identity = 208/294 (70.75%), Postives = 236/294 (80.27%), Query Frame = 0
BLAST of Lsi11G012160 vs. ExPASy TrEMBL
Match: A0A2I4EWX0 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC108993423 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 1.9e-100 Identity = 204/288 (70.83%), Postives = 236/288 (81.94%), Query Frame = 0
BLAST of Lsi11G012160 vs. NCBI nr
Match: XP_038887421.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 479.9 bits (1234), Expect = 1.5e-131 Identity = 253/288 (87.85%), Postives = 263/288 (91.32%), Query Frame = 0
BLAST of Lsi11G012160 vs. NCBI nr
Match: XP_022135964.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like [Momordica charantia]) HSP 1 Score: 456.1 bits (1172), Expect = 2.3e-124 Identity = 241/288 (83.68%), Postives = 258/288 (89.58%), Query Frame = 0
BLAST of Lsi11G012160 vs. NCBI nr
Match: XP_008447928.1 (PREDICTED: protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 [Cucumis melo]) HSP 1 Score: 450.7 bits (1158), Expect = 9.7e-123 Identity = 244/286 (85.31%), Postives = 256/286 (89.51%), Query Frame = 0
BLAST of Lsi11G012160 vs. NCBI nr
Match: XP_016900466.1 (PREDICTED: protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 [Cucumis melo]) HSP 1 Score: 414.1 bits (1063), Expect = 1.0e-111 Identity = 230/286 (80.42%), Postives = 241/286 (84.27%), Query Frame = 0
BLAST of Lsi11G012160 vs. NCBI nr
Match: XP_010086829.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic [Morus notabilis] >EXB24027.1 hypothetical protein L484_006058 [Morus notabilis]) HSP 1 Score: 379.4 bits (973), Expect = 2.7e-101 Identity = 208/294 (70.75%), Postives = 236/294 (80.27%), Query Frame = 0
BLAST of Lsi11G012160 vs. TAIR 10
Match: AT2G20920.1 (Protein of unknown function (DUF3353) ) HSP 1 Score: 290.8 bits (743), Expect = 1.2e-78 Identity = 170/286 (59.44%), Postives = 206/286 (72.03%), Query Frame = 0
BLAST of Lsi11G012160 vs. TAIR 10
Match: AT5G23040.1 (Protein of unknown function (DUF3353) ) HSP 1 Score: 55.1 bits (131), Expect = 1.1e-07 Identity = 63/271 (23.25%), Postives = 118/271 (43.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|