Lsi11G011230 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G011230
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionOxidative stress 3
Locationchr11: 19662754 .. 19664742 (+)
RNA-Seq ExpressionLsi11G011230
SyntenyLsi11G011230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCTCTCTTTCTCTCTTTTAATTGCAAAAATGGAAGATAAAGGAAACACCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGTAAGCAATTTTGCTCTATTTTTTTTACCAATTTTGAGAGTTTTTTTTTTTTTTTTTTTTTAAAAAAAATATTTGATTGCATCCCGAACTGCACCTATTTTTATACAAGTCACATACTAGTCTAATCATAGTTTGTCATTTAACGAACTTTTTTTTTTATTATTTTTTTGAATTTTTTTTTCTATATGATTGGAGGAGCTGCAAGAAGAGACTGCATTCGAGTATTTTTTTTTTTCATATTTTTTGAGTTAGTTTGATAATTATTTTTGCTATCAGATGGTAACATATTGGATATGGTTATGAATTTGGTAGTGACTTAGGGTCCGTTTGGATTGACTTTCTAAGTGTTTAAATAAGTGTTTATAAGCGCAAAAAAAGTGTTTATAAACACTTAAAAGGTCAATCCAAACGGACGCTTAAAAGGTTCAAAACTATATATGTTACAAGGCTTGAGTTTCTCCATTTTATTATGTGACTTAAGGCTTTTTTTTATGTGGCCTTGATATATTATATATTTTACTACAATTATTTGCAAAATTTACCCTTATAAGTCTCGTTTGAAAATGAATTTGTTTTTTTAAATAATTTGTATGTATTTTTCCTTCACAATTTCTTTATTATGGTTTGCACATTTGTTTAAAAAATTAATGTGTATTTTCAGCCAAAATTTTAAAAACAAAAACAAGTTCCTAAAAACTATGTTTCCTTACTAACCAATCAATTTTTTTTAATTTTTTTTTTGACAAAGTTTGTTTTCTCACCATCTTTTACCATTGTTTTCATATATACTTCATCGTGAAACAGTTGAATTCTTAATCAAATTCTAAAAAATAATATAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAATTTTTATTAGCAATCAGCGATAGAATTCTATTCTGGTCTATTGTTGATAGACAGTGAAATTTTTATATATTTGTAAATAGTTTGACTCATTAAAAAAACATAAATTTTTTAAAAACCATATATTTTTTTAGTTTTCAAAACTTGACTTAAATTTTAAAAACATTTCTAAAAATTTAAAAACAAAACAAAACTAAAAATAGCATCCATTTTCAAGAAACACAAAACTCAAAATCCCAAATGGTCAACAAATCGATGGACTTACTTTTTCAATTTTCAAAACATGGTTTCGATTTCAAGAACATTATTCTTCAAGAGCAGACAACAAAACAAAGAAATAACTCACACGGGTAAAAAGTAGTGTTTATATACAAATACCACTCCATATAATTTTAAAAAACAAAATAATCAGTAAACCAAAAGCAATAATAAATGAGAAATTACTACGATCATCAGTCAGGTTATATCGGTTAATTATTATAACAATGTGAGTTGTTTGTGTTTGACTTTATAGGAGGGGTTTGTCAAGGTATTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCTGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGTCCCTCCTTTTCATTCTCGACGAGTTTCTTCTCATTGTTCCATTCCCTTCTTTGCCACTTGAATATAAATAATTCTCCTCCAACAATATCATTTTGTAATTTTGTTTTTCGAGTCGTGATTCATATCTCTCTGACGTTTTAGTCGAACGGATGATACCGTAAACTCTAGTTGAGCTATGTTGATCGATGATGTTATATATAGCTCTCTGTTGATGATTTTCTTAATGTGTTAATTAACAGATCGTATGTTGAAATGTGTATGATTGACTTCGAGTTGTCTATATATTTAATTATAAATGCAACTCTTCTCGATATTTTTAAGTTAAATTATATAAAATATTCCTGAGTTTTGAGATGTTTC

mRNA sequence

TCTCTCTCTTTCTCTCTTTTAATTGCAAAAATGGAAGATAAAGGAAACACCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGGGGTTTGTCAAGGTATTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCTGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGTCCCTCCTTTTCATTCTCGACGAGTTTCTTCTCATTGTTCCATTCCCTTCTTTGCCACTTGAATATAAATAATTCTCCTCCAACAATATCATTTTGTAATTTTGTTTTTCGAGTCGTGATTCATATCTCTCTGACGTTTTAGTCGAACGGATGATACCGTAAACTCTAGTTGAGCTATGTTGATCGATGATGTTATATATAGCTCTCTGTTGATGATTTTCTTAATGTGTTAATTAACAGATCGTATGTTGAAATGTGTATGATTGACTTCGAGTTGTCTATATATTTAATTATAAATGCAACTCTTCTCGATATTTTTAAGTTAAATTATATAAAATATTCCTGAGTTTTGAGATGTTTC

Coding sequence (CDS)

ATGGAAGATAAAGGAAACACCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGGGGTTTGTCAAGGTATTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCTGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGTCCCTCCTTTTCATTCTCGACGAGTTTCTTCTCATTGTTCCATTCCCTTCTTTGCCACTTGA

Protein sequence

MEDKGNTMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCKEIHVPPFHSRRVSSHCSIPFFAT
Homology
BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A0A0K2B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0

Query: 1  MEDKGNTMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGN+MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDCKE--IHVPPFHSRRVSSHCSIPFFAT 91
          KKHSD KE  I+VPPFH RRVSSHCS+PF AT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A5A7SX13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00540 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 8.8e-36
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 8  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 67
          MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EI-HVPPFHSRRVSSHCSIPFFAT 91
          EI +VPPFH RR SSHCS+PF AT
Sbjct: 61 EITNVPPFHCRRASSHCSVPFIAT 84

BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A540N5I5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008086 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.5e-23
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 0

Query: 4  KGNTMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKH 63
          +G  M AFDMG+LRT LPQKRGLSRYYSGK+RSF C+ADVRSVEDLKKP++PDAKKRKKH
Sbjct: 2  EGENMRAFDMGALRTGLPQKRGLSRYYSGKSRSFTCMADVRSVEDLKKPENPDAKKRKKH 61

Query: 64 SDCKEIHV---PPFHSRRVSS--HCSIP 87
          S+ K   V   PP+  RRVSS   C+ P
Sbjct: 62 SERKNFPVPAYPPYPCRRVSSTTQCTAP 89

BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A061E0R1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 0

Query: 1  MEDKGNTMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MED+     AFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVR VEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDCKEIHV-PPFHSRRVSS--HCSIP 87
          KK+S+ KE+ +  P+  RRVSS  HC+ P
Sbjct: 61 KKYSNKKEMQLYTPYPCRRVSSCTHCAAP 88

BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: M5VHW2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 0

Query: 4  KGNTMMAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKK 63
          +G+ M AFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVRSVEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDCKEIHV---PPFHSRRVSS--HCSIP 87
          HS+ K   V   PP+  RRVSS   C+ P
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCAAP 90

BLAST of Lsi11G011230 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_020555 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38
Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0

Query: 1  MEDKGNTMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          MEDKGN+MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDCKE--IHVPPFHSRRVSSHCSIPFFAT 91
          KKHSD KE  I+VPPFH RRVSSHCS+PF AT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRVSSHCSVPFIAT 92

BLAST of Lsi11G011230 vs. NCBI nr
Match: KAA0033797.1 (hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK22337.1 hypothetical protein E5676_scaffold1428G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 1.8e-35
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0

Query: 8  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 67
          MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EI-HVPPFHSRRVSSHCSIPFFAT 91
          EI +VPPFH RR SSHCS+PF AT
Sbjct: 61 EITNVPPFHCRRASSHCSVPFIAT 84

BLAST of Lsi11G011230 vs. NCBI nr
Match: KAG6588432.1 (hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 5.0e-33
Identity = 75/91 (82.42%), Postives = 78/91 (85.71%), Query Frame = 0

Query: 1  MEDKGNTMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60
          M+D+GN MMAFDM SL  NLPQKRGLSRYYSGKARSFACIAD R VEDLKKP HPDAKKR
Sbjct: 1  MKDQGNNMMAFDMSSLGANLPQKRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKR 60

Query: 61 KKHSDCKEIHVPPFHSRRVSS-HCSIPFFAT 91
          KKHSDCK IHV P H RR SS HCSIPFFA+
Sbjct: 61 KKHSDCKGIHVSPHHCRRASSTHCSIPFFAS 91

BLAST of Lsi11G011230 vs. NCBI nr
Match: KAG6572054.1 (hypothetical protein SDJN03_28782, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011720.1 hypothetical protein SDJN02_26626, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 8.5e-25
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0

Query: 23 KRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCKEIHVPPFHSRRVSSH 82
          +RGLSRYYSGK+RSFACIADVR VEDLKKPKHP+AKKRKK SDCKEIHVPP+H RR+SS 
Sbjct: 20 RRGLSRYYSGKSRSFACIADVRCVEDLKKPKHPEAKKRKKQSDCKEIHVPPYHCRRISSQ 79

Query: 83 CSIPFF 89
          CSIPFF
Sbjct: 80 CSIPFF 85

BLAST of Lsi11G011230 vs. NCBI nr
Match: KAG7022280.1 (hypothetical protein SDJN02_16011, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23
Identity = 59/72 (81.94%), Postives = 61/72 (84.72%), Query Frame = 0

Query: 20  LPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCKEIHVPPFHSRRV 79
           L  +RGLSRYYSGKARSFACIAD R VEDLKKP HPDAKKRKKHSDCK IHV P H RR 
Sbjct: 171 LEYRRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKRKKHSDCKGIHVSPHHCRRA 230

Query: 80  SS-HCSIPFFAT 91
           SS HCSIPFFA+
Sbjct: 231 SSTHCSIPFFAS 242

BLAST of Lsi11G011230 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 )

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06
Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 12  DMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKK 52
           D+  L ++LP KRGLS++Y GK++SF  + +V+S+EDL K
Sbjct: 77  DLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMK 116

BLAST of Lsi11G011230 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.2e-06
Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 13  MGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCKEIHVP 72
           M SL  +LP KRGLS +Y GK++SF  + ++ SV+++ K ++P   KR++   C ++   
Sbjct: 98  MSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENP-LNKRRRLQICNKLARK 157

Query: 73  PFHS 77
            F+S
Sbjct: 158 SFYS 160

BLAST of Lsi11G011230 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 23  KRGLSRYYSGKARSFACIADVRSVEDLKKPKHP---DAKKRKKHSDCKEI 70
           +RGLS++Y GK++SF  +A+  +VEDL KP++P     K+R++   C+ +
Sbjct: 56  RRGLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESPHCRRL 105

BLAST of Lsi11G011230 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 3.0e-04
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 13  MGSLRTNLPQKRGLSRYYSGKARSF--------ACIADVRSVEDLKKPKHPDAKKRK 62
           M SL   LP ++G+S+YYSGK++SF        + +    S++DL KP++P +++R+
Sbjct: 78  MESLEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRR 134

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K2B18.5e-3991.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1[more]
A0A5A7SX138.8e-3692.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A540N5I56.5e-2369.32Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008086 PE=4 SV=1[more]
A0A061E0R11.5e-2270.79Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1[more]
M5VHW21.9e-2269.66Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN43154.11.8e-3891.30hypothetical protein Csa_020555 [Cucumis sativus][more]
KAA0033797.11.8e-3592.86hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK2233... [more]
KAG6588432.15.0e-3382.42hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572054.18.5e-2586.36hypothetical protein SDJN03_28782, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7022280.12.7e-2381.94hypothetical protein SDJN02_16011, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
AT5G56550.15.5e-0650.00oxidative stress 3 [more]
AT5G24890.17.2e-0637.50unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G03170.11.0e-0440.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G21940.13.0e-0436.84unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33172OS08G0516900 PROTEINcoord: 4..83
NoneNo IPR availablePANTHERPTHR33172:SF38BNAA01G05330D PROTEINcoord: 4..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G011230.1Lsi11G011230.1mRNA