Lsi11G011230 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCTCTCTTTCTCTCTTTTAATTGCAAAAATGGAAGATAAAGGAAACACCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGTAAGCAATTTTGCTCTATTTTTTTTACCAATTTTGAGAGTTTTTTTTTTTTTTTTTTTTTAAAAAAAATATTTGATTGCATCCCGAACTGCACCTATTTTTATACAAGTCACATACTAGTCTAATCATAGTTTGTCATTTAACGAACTTTTTTTTTTATTATTTTTTTGAATTTTTTTTTCTATATGATTGGAGGAGCTGCAAGAAGAGACTGCATTCGAGTATTTTTTTTTTTCATATTTTTTGAGTTAGTTTGATAATTATTTTTGCTATCAGATGGTAACATATTGGATATGGTTATGAATTTGGTAGTGACTTAGGGTCCGTTTGGATTGACTTTCTAAGTGTTTAAATAAGTGTTTATAAGCGCAAAAAAAGTGTTTATAAACACTTAAAAGGTCAATCCAAACGGACGCTTAAAAGGTTCAAAACTATATATGTTACAAGGCTTGAGTTTCTCCATTTTATTATGTGACTTAAGGCTTTTTTTTATGTGGCCTTGATATATTATATATTTTACTACAATTATTTGCAAAATTTACCCTTATAAGTCTCGTTTGAAAATGAATTTGTTTTTTTAAATAATTTGTATGTATTTTTCCTTCACAATTTCTTTATTATGGTTTGCACATTTGTTTAAAAAATTAATGTGTATTTTCAGCCAAAATTTTAAAAACAAAAACAAGTTCCTAAAAACTATGTTTCCTTACTAACCAATCAATTTTTTTTAATTTTTTTTTTGACAAAGTTTGTTTTCTCACCATCTTTTACCATTGTTTTCATATATACTTCATCGTGAAACAGTTGAATTCTTAATCAAATTCTAAAAAATAATATAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAATTTTTATTAGCAATCAGCGATAGAATTCTATTCTGGTCTATTGTTGATAGACAGTGAAATTTTTATATATTTGTAAATAGTTTGACTCATTAAAAAAACATAAATTTTTTAAAAACCATATATTTTTTTAGTTTTCAAAACTTGACTTAAATTTTAAAAACATTTCTAAAAATTTAAAAACAAAACAAAACTAAAAATAGCATCCATTTTCAAGAAACACAAAACTCAAAATCCCAAATGGTCAACAAATCGATGGACTTACTTTTTCAATTTTCAAAACATGGTTTCGATTTCAAGAACATTATTCTTCAAGAGCAGACAACAAAACAAAGAAATAACTCACACGGGTAAAAAGTAGTGTTTATATACAAATACCACTCCATATAATTTTAAAAAACAAAATAATCAGTAAACCAAAAGCAATAATAAATGAGAAATTACTACGATCATCAGTCAGGTTATATCGGTTAATTATTATAACAATGTGAGTTGTTTGTGTTTGACTTTATAGGAGGGGTTTGTCAAGGTATTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCTGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGTCCCTCCTTTTCATTCTCGACGAGTTTCTTCTCATTGTTCCATTCCCTTCTTTGCCACTTGAATATAAATAATTCTCCTCCAACAATATCATTTTGTAATTTTGTTTTTCGAGTCGTGATTCATATCTCTCTGACGTTTTAGTCGAACGGATGATACCGTAAACTCTAGTTGAGCTATGTTGATCGATGATGTTATATATAGCTCTCTGTTGATGATTTTCTTAATGTGTTAATTAACAGATCGTATGTTGAAATGTGTATGATTGACTTCGAGTTGTCTATATATTTAATTATAAATGCAACTCTTCTCGATATTTTTAAGTTAAATTATATAAAATATTCCTGAGTTTTGAGATGTTTC TCTCTCTCTTTCTCTCTTTTAATTGCAAAAATGGAAGATAAAGGAAACACCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGGGGTTTGTCAAGGTATTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCTGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGTCCCTCCTTTTCATTCTCGACGAGTTTCTTCTCATTGTTCCATTCCCTTCTTTGCCACTTGAATATAAATAATTCTCCTCCAACAATATCATTTTGTAATTTTGTTTTTCGAGTCGTGATTCATATCTCTCTGACGTTTTAGTCGAACGGATGATACCGTAAACTCTAGTTGAGCTATGTTGATCGATGATGTTATATATAGCTCTCTGTTGATGATTTTCTTAATGTGTTAATTAACAGATCGTATGTTGAAATGTGTATGATTGACTTCGAGTTGTCTATATATTTAATTATAAATGCAACTCTTCTCGATATTTTTAAGTTAAATTATATAAAATATTCCTGAGTTTTGAGATGTTTC ATGGAAGATAAAGGAAACACCATGATGGCTTTTGATATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGGGGTTTGTCAAGGTATTATTCTGGAAAAGCAAGATCATTTGCTTGCATAGCTGATGTTCGAAGTGTAGAAGATTTGAAGAAACCAAAACATCCTGATGCTAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATTCATGTCCCTCCTTTTCATTCTCGACGAGTTTCTTCTCATTGTTCCATTCCCTTCTTTGCCACTTGA MEDKGNTMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCKEIHVPPFHSRRVSSHCSIPFFAT Homology
BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A0A0K2B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39 Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0
BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A5A7SX13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00540 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 8.8e-36 Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0
BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A540N5I5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008086 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 6.5e-23 Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 0
BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: A0A061E0R1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22 Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 0
BLAST of Lsi11G011230 vs. ExPASy TrEMBL
Match: M5VHW2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.9e-22 Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 0
BLAST of Lsi11G011230 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_020555 [Cucumis sativus]) HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38 Identity = 84/92 (91.30%), Postives = 87/92 (94.57%), Query Frame = 0
BLAST of Lsi11G011230 vs. NCBI nr
Match: KAA0033797.1 (hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK22337.1 hypothetical protein E5676_scaffold1428G00540 [Cucumis melo var. makuwa]) HSP 1 Score: 159.1 bits (401), Expect = 1.8e-35 Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0
BLAST of Lsi11G011230 vs. NCBI nr
Match: KAG6588432.1 (hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 151.0 bits (380), Expect = 5.0e-33 Identity = 75/91 (82.42%), Postives = 78/91 (85.71%), Query Frame = 0
BLAST of Lsi11G011230 vs. NCBI nr
Match: KAG6572054.1 (hypothetical protein SDJN03_28782, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011720.1 hypothetical protein SDJN02_26626, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 123.6 bits (309), Expect = 8.5e-25 Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 0
BLAST of Lsi11G011230 vs. NCBI nr
Match: KAG7022280.1 (hypothetical protein SDJN02_16011, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23 Identity = 59/72 (81.94%), Postives = 61/72 (84.72%), Query Frame = 0
BLAST of Lsi11G011230 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 ) HSP 1 Score: 47.8 bits (112), Expect = 5.5e-06 Identity = 20/40 (50.00%), Postives = 31/40 (77.50%), Query Frame = 0
BLAST of Lsi11G011230 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 7.2e-06 Identity = 24/64 (37.50%), Postives = 41/64 (64.06%), Query Frame = 0
BLAST of Lsi11G011230 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04 Identity = 20/50 (40.00%), Postives = 35/50 (70.00%), Query Frame = 0
BLAST of Lsi11G011230 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 42.0 bits (97), Expect = 3.0e-04 Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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