Lsi11G009570 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G009570
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Cytochrome f
Location	chr11: 14665290 .. 14665799 (-)
RNA-Seq Expression	Lsi11G009570
Synteny	Lsi11G009570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTACCGTCCCACTAAAAAAAATATTCTTGTGATAAGGCCTGTTCTTGATAATAAATATAGTGAAATCACCTTTCCTATTCTTTCCCTGGACCCTGTGACTAAGAAAGATGTTCACTTCTTAAAATATCTCATATACGTAGGCGGGAACAAGGGAAGGGGTCAGATTTATCTCGATGGGAGTAAGAGTAATCATAATGTTTATAATGCTACAGCAGCAGGTATAGTAAGCAAAATAATACGAAAAGAAAAAAGAAGATATGAAATAACTATAGTGGATGCAACGAATGGGCGTCAACTGGTTGATATTATCCCTCTATGACCAGAACTTCTTGTTTTAGAGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGAGAGATGCAGAAATAGTCCATCAAGATCCATTTCAAGTGGTTGATATTATCCCTCTAGGACTAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATTAA

mRNA sequence

AGCTACCGTCCCACTAAAAAAAATATTCTTGTGATAAGGCCTGTTCTTGATAATAAATATAGTGAAATCACCTTTCCTATTCTTTCCCTGGACCCTGTGACTAAGAAAGATGTTCACTTCTTAAAATATCTCATATACGTAGGCGGGAACAAGGGAAGGGGTCAGATTTATCTCGATGGGAGTAAGAGTAATCATAATGTTTATAATGCTACAGCAGCAGGTATAGTAAGCAAAATAATACGAAAAGAAAAAAGAAGATATGAAATAACTATAGTGGATGCAACGAATGGGCGTCAACTGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGAGAGATGCAGAAATAGTCCATCAAGATCCATTTCAAGTGGTTGATATTATCCCTCTAGGACTAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATTAA

Coding sequence (CDS)

AGCTACCGTCCCACTAAAAAAAATATTCTTGTGATAAGGCCTGTTCTTGATAATAAATATAGTGAAATCACCTTTCCTATTCTTTCCCTGGACCCTGTGACTAAGAAAGATGTTCACTTCTTAAAATATCTCATATACGTAGGCGGGAACAAGGGAAGGGGTCAGATTTATCTCGATGGGAGTAAGAGTAATCATAATGTTTATAATGCTACAGCAGCAGGTATAGTAAGCAAAATAATACGAAAAGAAAAAAGAAGATATGAAATAACTATAGTGGATGCAACGAATGGGCGTCAACTGGGCGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGAGGATTTGGTCAGAGAGATGCAGAAATAGTCCATCAAGATCCATTTCAAGTGGTTGATATTATCCCTCTAGGACTAGAACTTCTTGTTTCAGAGGGCGAATCTATCAAACTTGATTAA

Protein sequence

SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDGSKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQLGESIKLDQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD

Homology

[Close]

BLAST of Lsi11G009570 vs. ExPASy Swiss-Prot
Match: Q2QD76 (Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.3e-56
Identity = 116/152 (76.32%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATAAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. ExPASy Swiss-Prot
Match: Q09X04 (Cytochrome f OS=Morus indica OX=248361 GN=petA PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.2e-55
Identity = 114/152 (75.00%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNAT+AGIVSKIIRKEK  YEITIVDA++GRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATSAGIVSKIIRKEKGGYEITIVDASDGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. ExPASy Swiss-Prot
Match: Q0ZJ07 (Cytochrome f OS=Vitis vinifera OX=29760 GN=petA PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.1e-54
Identity = 111/152 (73.03%), Postives = 121/152 (79.61%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           +YRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 NYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+ VYNATAAGIVSKIIRKEK  YEITI DA++GRQ+              GESIKL
Sbjct: 199 SKSNNTVYNATAAGIVSKIIRKEKGGYEITIADASDGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP ++  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRIQGLL 290

[Close]

BLAST of Lsi11G009570 vs. ExPASy Swiss-Prot
Match: A6MM49 (Cytochrome f OS=Buxus microphylla OX=153571 GN=petA PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.0e-54
Identity = 111/152 (73.03%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+ VYNATAAGI+SKIIRKEK  YEITI DA++G Q+              GESIKL
Sbjct: 199 SKSNNTVYNATAAGIISKIIRKEKGGYEITIADASDGHQVVNIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. ExPASy Swiss-Prot
Match: B1NWG3 (Cytochrome f OS=Manihot esculenta OX=3983 GN=petA PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.0e-54
Identity = 112/152 (73.68%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP  KKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPAAKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+ VYNATAAGIVSKIIRKEK  YEITI DA+ GRQ+              GESIKL
Sbjct: 199 SKSNNTVYNATAAGIVSKIIRKEKGGYEITITDASEGRQVIDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. ExPASy TrEMBL
Match: A0A1Z3MIM4 (Cytochrome f OS=Actinidia kolomikta OX=165710 GN=petA PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.8e-55
Identity = 122/169 (72.19%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRP KKNILVI PV   KYSEITFPILS DP TKKDV+FLKY IYVGGN+GRGQIY  G
Sbjct: 139 SYRPNKKNILVIGPVPGKKYSEITFPILSPDPATKKDVYFLKYPIYVGGNRGRGQIYPGG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           +KSN+ VYNATAAGIVSKIIRKEK  YEITI DA++GRQ+              GESIK 
Sbjct: 199 NKSNNTVYNATAAGIVSKIIRKEKGGYEITIADASDGRQVVDIIPPGPELLVSEGESIKF 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD 156
           DQPLTSNPNVGGFGQ DA     D  QVVDIIP G ELLVSEGESIK D
Sbjct: 259 DQPLTSNPNVGGFGQGDASADASDGRQVVDIIPPGPELLVSEGESIKFD 307

[Close]

BLAST of Lsi11G009570 vs. ExPASy TrEMBL
Match: A0A4S8I4J6 (Cytochrome f OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t09270 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 120/169 (71.01%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRP K+NI+VI PV   KYSEI FPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 126 SYRPNKRNIIVIGPVPGQKYSEIVFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 185

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+ VYNAT+AGIVS+I+RKEK  YEITIVDA++G Q+              GESIKL
Sbjct: 186 SKSNNTVYNATSAGIVSRIVRKEKGGYEITIVDASDGHQVVDIIPPGPELLVSEGESIKL 245

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD 156
           DQPLTSNPNVGGFGQ DAEIV QDP +V      G ELLVSEGESIKLD
Sbjct: 246 DQPLTSNPNVGGFGQGDAEIVLQDPLRV-----QGPELLVSEGESIKLD 289

[Close]

BLAST of Lsi11G009570 vs. ExPASy TrEMBL
Match: A0A6H0EQ33 (Cytochrome f OS=Luffa aegyptiaca OX=3670 GN=petA PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.2e-54
Identity = 116/152 (76.32%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNATAAGIVSKIIRKEKR YEITIVDA +GRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATAAGIVSKIIRKEKRGYEITIVDAADGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. ExPASy TrEMBL
Match: A0A218KG41 (Cytochrome f OS=Cucumis sativus var. hardwickii OX=319220 GN=petA PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 116/152 (76.32%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATAAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. ExPASy TrEMBL
Match: A0A1X9Q151 (Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 116/152 (76.32%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATAAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. NCBI nr
Match: ASD34349.1 (apocytochrome f [Actinidia kolomikta])

HSP 1 Score: 224.2 bits (570), Expect = 7.9e-55
Identity = 122/169 (72.19%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRP KKNILVI PV   KYSEITFPILS DP TKKDV+FLKY IYVGGN+GRGQIY  G
Sbjct: 139 SYRPNKKNILVIGPVPGKKYSEITFPILSPDPATKKDVYFLKYPIYVGGNRGRGQIYPGG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           +KSN+ VYNATAAGIVSKIIRKEK  YEITI DA++GRQ+              GESIK 
Sbjct: 199 NKSNNTVYNATAAGIVSKIIRKEKGGYEITIADASDGRQVVDIIPPGPELLVSEGESIKF 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD 156
           DQPLTSNPNVGGFGQ DA     D  QVVDIIP G ELLVSEGESIK D
Sbjct: 259 DQPLTSNPNVGGFGQGDASADASDGRQVVDIIPPGPELLVSEGESIKFD 307

[Close]

BLAST of Lsi11G009570 vs. NCBI nr
Match: THU42770.1 (hypothetical protein C4D60_Mb00t09270 [Musa balbisiana])

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-54
Identity = 120/169 (71.01%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRP K+NI+VI PV   KYSEI FPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 126 SYRPNKRNIIVIGPVPGQKYSEIVFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 185

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+ VYNAT+AGIVS+I+RKEK  YEITIVDA++G Q+              GESIKL
Sbjct: 186 SKSNNTVYNATSAGIVSRIVRKEKGGYEITIVDASDGHQVVDIIPPGPELLVSEGESIKL 245

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDIIPLGLELLVSEGESIKLD 156
           DQPLTSNPNVGGFGQ DAEIV QDP +V      G ELLVSEGESIKLD
Sbjct: 246 DQPLTSNPNVGGFGQGDAEIVLQDPLRV-----QGPELLVSEGESIKLD 289

[Close]

BLAST of Lsi11G009570 vs. NCBI nr
Match: QIT04063.1 (cytochrome f [Luffa aegyptiaca] >QKX48572.1 cytochrome f [Luffa aegyptiaca])

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-53
Identity = 116/152 (76.32%), Postives = 123/152 (80.92%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNATAAGIVSKIIRKEKR YEITIVDA +GRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATAAGIVSKIIRKEKRGYEITIVDAADGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. NCBI nr
Match: YP_009456159.1 (cytochrome f [Lagenaria siceraria] >QNM38544.1 cytochrome f [Lagenaria siceraria var. microcarpa] >AHM88700.1 cytochrome f [Lagenaria siceraria] >AHM88759.1 cytochrome f [Lagenaria siceraria] >AHM88817.1 cytochrome f [Lagenaria siceraria] >AHM88932.1 cytochrome f [Lagenaria siceraria])

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-53
Identity = 116/152 (76.32%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATAAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPRGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. NCBI nr
Match: YP_009752003.1 (cytochrome f [Cionosicys macranthus] >QIT05244.1 cytochrome f [Cionosicys macranthus])

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-53
Identity = 116/152 (76.32%), Postives = 122/152 (80.26%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           SYRPTKKNILVI PV   KYSEITFPILS DP TKKDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 SYRPTKKNILVIGPVPGQKYSEITFPILSPDPATKKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+NVYNATAAGIVSKIIRKEK  YEITIVDA NGRQ+              GESIKL
Sbjct: 199 SKSNNNVYNATAAGIVSKIIRKEKGGYEITIVDAANGRQVVDIIPPGPELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

[Close]

BLAST of Lsi11G009570 vs. TAIR 10
Match: ATCG00540.1 (photosynthetic electron transfer A )

HSP 1 Score: 207.2 bits (526), Expect = 9.3e-54
Identity = 107/152 (70.39%), Postives = 119/152 (78.29%), Query Frame = 0


Query: 1   SYRPTKKNILVIRPVLDNKYSEITFPILSLDPVTKKDVHFLKYLIYVGGNKGRGQIYLDG 60
           +YRP KKNILVI PV   KYSEITFPIL+ DP T KDVHFLKY IYVGGN+GRGQIY DG
Sbjct: 139 NYRPNKKNILVIGPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVGGNRGRGQIYPDG 198

Query: 61  SKSNHNVYNATAAGIVSKIIRKEKRRYEITIVDATNGRQL--------------GESIKL 120
           SKSN+ VYNATA GI+SKI+RKEK  YEITIVDA+NGR++              GESIKL
Sbjct: 199 SKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNGREVIDIIPRGLELLVSEGESIKL 258

Query: 121 DQPLTSNPNVGGFGQRDAEIVHQDPFQVVDII 139
           DQPLTSNPNVGGFGQ DAEIV QDP +V  ++
Sbjct: 259 DQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLL 290

The following BLAST results are available for this feature:

BLAST of Lsi11G009570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD76	3.3e-56	76.32	Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1	[more]
Q09X04	2.2e-55	75.00	Cytochrome f OS=Morus indica OX=248361 GN=petA PE=3 SV=1	[more]
Q0ZJ07	4.1e-54	73.03	Cytochrome f OS=Vitis vinifera OX=29760 GN=petA PE=3 SV=1	[more]
A6MM49	7.0e-54	73.03	Cytochrome f OS=Buxus microphylla OX=153571 GN=petA PE=3 SV=1	[more]
B1NWG3	7.0e-54	73.68	Cytochrome f OS=Manihot esculenta OX=3983 GN=petA PE=3 SV=1	[more]

BLAST of Lsi11G009570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Z3MIM4	3.8e-55	72.19	Cytochrome f OS=Actinidia kolomikta OX=165710 GN=petA PE=3 SV=1	[more]
A0A4S8I4J6	1.5e-54	71.01	Cytochrome f OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t09270 PE=4 SV=1	[more]
A0A6H0EQ33	7.2e-54	76.32	Cytochrome f OS=Luffa aegyptiaca OX=3670 GN=petA PE=3 SV=1	[more]
A0A218KG41	1.2e-53	76.32	Cytochrome f OS=Cucumis sativus var. hardwickii OX=319220 GN=petA PE=3 SV=1	[more]
A0A1X9Q151	1.2e-53	76.32	Cytochrome f OS=Cucumis sativus OX=3659 GN=petA PE=3 SV=1	[more]

BLAST of Lsi11G009570 vs. NCBI nr


Match Name	E-value	Identity	Description
ASD34349.1	7.9e-55	72.19	apocytochrome f [Actinidia kolomikta]	[more]
THU42770.1	3.0e-54	71.01	hypothetical protein C4D60_Mb00t09270 [Musa balbisiana]	[more]
QIT04063.1	1.5e-53	76.32	cytochrome f [Luffa aegyptiaca] >QKX48572.1 cytochrome f [Luffa aegyptiaca]	[more]
YP_009456159.1	2.6e-53	76.32	cytochrome f [Lagenaria siceraria] >QNM38544.1 cytochrome f [Lagenaria siceraria...	[more]
YP_009752003.1	2.6e-53	76.32	cytochrome f [Cionosicys macranthus] >QIT05244.1 cytochrome f [Cionosicys macran...	[more]

BLAST of Lsi11G009570 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00540.1	9.3e-54	70.39	photosynthetic electron transfer A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PRINTS	PR00610	CYTOCHROMEF	coord: 51..74 score: 68.84 coord: 9..29 score: 63.77 coord: 30..50 score: 65.63
IPR002325	Cytochrome f	PFAM	PF01333	Apocytochr_F_C	coord: 64..135 e-value: 8.6E-15 score: 54.8
IPR002325	Cytochrome f	PROSITE	PS51010	CYTF	coord: 1..148 score: 37.590385
IPR036826	Cytochrome f large domain superfamily	GENE3D	2.60.40.830	Cytochrome f large domain	coord: 1..135 e-value: 6.9E-35 score: 122.6
IPR036826	Cytochrome f large domain superfamily	SUPERFAMILY	49441	Cytochrome f, large domain	coord: 2..132
IPR024094	Cytochrome f large domain	PFAM	PF16639	Apocytochr_F_N	coord: 2..52 e-value: 1.2E-13 score: 51.7
None	No IPR available	GENE3D	2.40.50.100		coord: 68..102 e-value: 2.3E-7 score: 32.7
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 1..134 coord: 133..155
None	No IPR available	PANTHER	PTHR33288:SF9	CYTOCHROME F	coord: 1..134 coord: 133..155
IPR011054	Rudiment single hybrid motif	SUPERFAMILY	51246	Rudiment single hybrid motif	coord: 121..155
IPR011054	Rudiment single hybrid motif	SUPERFAMILY	51246	Rudiment single hybrid motif	coord: 66..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G009570.1	Lsi11G009570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding