Lsi11G008920 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G008920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	splicing factor 3B subunit 2
Location	chr11: 11826367 .. 11833074 (+)
RNA-Seq Expression	Lsi11G008920
Synteny	Lsi11G008920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTGAAAAACCCATCTTAGCTTTAAAAGAGGGGCAATTCAGACTTTTCAAATCTCCCATTACCCTCTCTGAATAACTTCATCACTGTAATTTGGCGTCCGTTCAATTTCTCTCTTTTGGAATTCAGCTCTGCAACACACACACACGCGGAGAAGGATTTTTGAGATTTCTCCTCCTCCACCACCTGCCTGATTCTCTCTCAACATACTTCTACGATTTTTCGCCGCTACCTCCGCGTTGCCTCTCGTTTCTGCCCTCGCCGGAGAACCAAAGAGAAACCCTGCCTCCCGTCTTGCCCTTACTATCCTCCACCGCCGTGGCCTTGCCGGAAACAGGTTCTTATTCTTCTTTACCCTACGGGTTTTGCTATTTTTCTGCCTTTTACTCCTCGGTTTTGGTTGCTTTCCTGTTGGTCATCTGCTGATTTCCGTACATTTCCATTTTGATTTGTTATGTATCGTTCTTCTCTCCATTCTCATAGTTGCGTGTGCGGTTTGTTTATTGATCGATTTGTGCGAAGACTGAATCCGAGCATGACTGCGGAGGTTTCTCAGCCAAATGGAGTTGTCTCGAACCACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCACGAGAAAGTGAACGACGTCGTCGTCGACGAAAGCAGAAGAAGAACCAGAAGGCTTCTAAGGTGAAGGAGGCTGCTGGTGGAGAAGATAGTGACGCTTCCGGCGACGACACGAAGGAGAACGATGATCCACTGCAGGTTTGTTTTCTTTCCGTTTTTTATTTTACGTTGAGGAAATGTTTGTCGGTTTGTGGTTTTAGGGTTATGTTCTCTTAGTGTTTGGGTCTTGTTGGAAAATATTGGTTTTTGGAATGAAGGTTGAACTAGAAAGGTGGAATTTGTGGGTTGTCATGTGGGAAGGAGAGTTATATCCAAGAGACTATGACATCGATCATTTTTTGACGATAACAAGCGGATTTAAGTTGAGATTTAGATGATGCTCTATGTGAGTTAGAAAGTGAGTACGCAGCACTGAGCCCTACCCGTACCAGATATAGCTAGGTTCATTTGTTAAGTTTCCATTATCTTTTGAAAGATCTTAGAGAATAATCCATCAACAAACTAATCTATTAGCAATTCCAGTATCTTTCTTGGTACATAGTCCATCTTGAGGTGTCATGATACAATTCATGTTATGCCTTTTGATTCATTAGAATCTTTTCTTATTCTTAACCCTTCCGTTGAGCTGAAGTTTAGTCTCTCAGTTGATGCCCACGGTGTTGATTATTGTTCTCTGATATTTTTTCCTAGAATTTGGTTAATAAGGTTGGTAGGACTTACAGTTTTGTAACATCAGTCATCTAATTATTATTAACAATTGGAAGGCTCTCCATTTGTAATGTTCCTTTAGCCTTGGGCAGGGGTTATCTCTACCCTTGCCCCTACGTTATTCATTCACCTTCTTTTGAGGAATGTACCTATTTGTTTCTTATTAAAAAGAAAATAAGGAGCTTAGAATCTTGATTTTAGGACAGCAAGAACATTCATGGGTTGATTCCCTCTTCTTTTTTGCTTTAGTGCCATATGGTTAAATGAATTGCTTGATGTTAATGAGCCATCCAAAGTGCATTTTTTTTTTGAATTTATAGGTTGCTGAGAAAGTAGAAATCGAATATGTACCTGAGAAGGCCGAACTAGACGATAGCTTGGATGAAGACTTTAGGAAAGTTTTTGAGAAATTCAGTTTCAGTGAGGTTGCTGGTGCTGAGGTAAGTTTAAACTTACCCATGTAATTTTGCTTATCAGTTCAGTTTCTTCAGTCATGATGGAATCCTCTGAAATTTCTGCTTTCTATTTCTACATAGGAGAATGAAAAAAAAGATGAGTCTGCCCAAAATGCAGCATCTAAGAAGTCAGACTCGGATTCTGAATATGAAGAACTTGATAATCAACAAAAGGAAAAAGGCTTGTCAAACAAGAAAAAGAAGGTATAGAGCCTTGCTATTATCTTACCATTTATTTATGTATAAAGGACGGCTTTGGTTATTGCTTGTCATAACGCACTGAAAGTAAATGGTTCTTGCCACTTTCAGCTGCAACGGCGTATGAAGATTGCAGAGTTGAAGCAGATTTGTTCGAGACCAGATGTTGTTGAGGTAGATGTAGCTATGGAGCACTTTATACTTATTGCACATATCTTTTTCCTTACAAAATCATCATAAAAACCTGACACCCAAGAGTGTCCGGTTGCATTTTCTGGGTATGATATCATTGTGTGCTTATCTATTTACTGTTCAGATCTGGGATGCAACTGCAGCTGATCCCAAGTTACTTGTTTATCTAAAATCTTATCGCAACACAGTTCCTGTGCCAAGGCATTGGTGTCAGAAAAGGAAATTTTTACAGGTCAGTAATTCTGCTGATATTAAATTTACGTCTATATACATCTATGCACAATTGATGGGTATGTTCAACATGAGGAAATGAGAGAGTTGAGTGAGGGAAGATCGTGTTGATAAGGTTTCTCTTATATGTACATATCTGGTTCTTGCAGGGGTGTGGCTGTGACACTGTTGGAGCCGGAACTTGTAGGTGTTTGCTAAGAGCACCCATGGATTATTTCTATTTTAGTATATTTTGTGGTGTGGGCTGGGATGTGAACAATTTTATGTTGCATTGATGGGCAAATTTGTATTGCATGATTTTTTCCCCTTGTATATCTTCATCAATATGACAATCAGACAGTTTTTAAATTTTAGATGCCTTTATGTTAATAATGACCCTGCCATTCTATGATTCTATTGATGAATTAATATCTTAGTTTGGATTGGATCTTAGTAGTAGTTGGATTTATTTTGCAGGGGAAGCGTGGTATCGAAAAACAGCCATTCCAACTTCCAGATTTTATTGCAGCAACAGGAATTGAGAAGATTAGACAGGTAGCTTGTTATTACAACTTTAGTTCATATTACGCTGGCAAAACCATGTTTTCCATCTGAATGTATTTCAATACACATGCTATACCCAATGTGATGCCTGAAATTGCCAATTCTTATCCAAGAAAAGAAATTTCCAATTCTTTATTATACTTGTTGTGCAGGCCTACATAGAAAAAGAGGATAGTAAGAAATTGAAGCAAAAGCAAAGAGAACGAATGCAGCCAAAGATGGGAAAGATGGATATCGATTATCAGGTCTTTACTACCTTTTGACTTGATATGTATTTGATTTGTAACATCTAGTTTTATGTCTGCTGATAGGTGTCTTTGTCAAGAATGTGGACATTCTAACTAATTAAATTGGCTCTTGTGCATTAGGTACTTCATGATGCTTTTTTTAAGTACCAAACAAAGCCAAAGCTGACAACTCTTGGAGATTTGTACTATGAAGGCAAAGAGTTTGAGGTATTACGTTATTACTATCATTTATCCACAATGCTCTTTGGTCTCTAGGTACCACGTACCATTGCATCTTGTTATATTTTATGCATTAAGATCTGAATATGGCCAATGTGCATTTTAAGTTCATAAATAAGGAGCTGGTATAGAAGTTCATAAATAAGGAGCTTTTACCAAAAAAGTTCATAAATAAGGAGCTGGTATAGAAGTAACTATTTGTACATGGTTGCTGCTTGTATACAGCTATTGAGTAGTTAATCCGTGGGGATTTAGCTTTCTTGTTTGTTCATTGGCATACAGGTTAAGTTAAGGGAGATGAAACCAGGCATGCTGTCACAAGAACTGAAAGAAGCGCTTGGTATGCCAGAAGGCGCTCCTCCTCCATGGCTCATCAACATGCAGGTTGGACAATTAAACTTATTGTCAAACTGAAATCTGACCTTGTGTTTTCTTGAAGCTGTTCTTATTTGTGATCTTACAAATTATCTTTGTGTTTTTTTTTTCATAGAGATATGGTCCTCCACCATCCTATCCAGATCTAAAGATTCCAGGACTCAATGCTCCTATTCCACCTGGAGCTAGCTTTGGTTACCATCCTGGTGGCTGGGGCAAGCCTCCTGTGGATGAAGTAAGTATTTGACTTGTCATATTTTTTTCTTCCAGTTTAATCTGCTAAATGTTAACCATTGTTCTTTCTGTTATCATGGATAGTATGGCCGTCCCCTGTATGGAGACGTGTTTGGTGTTCAGCAGCAGGAGCAAGCTAACTATGAGGTATCTTATTTATTTTTTCTACCAAAAGCTTTTGATTAATTTAGCGAAGGATGGATACATGAAAAGCAGAACTAAATATCCAACATTTAGGTTCTTATAAGAATTTCTCAAACTGTCCCTTCGAGGACATCCGATAAAATTGGAACGATATAAGACATGCTCAAACTAGAGCTGTGGAAAAGGGGTAAAATTACAGATATTAATGGTGAACCTCAATTTGGAGATGTAAATTATTTATCAAATTCAATATTTGCTCTTAATCTCTCTATGTTTGTGATACTTTGTTGCTGATTCCCTTTTCGACTCCAATGTGGATTATCTTTTATGCCAATTCCTTCGACTCCAATGTAGATTATCTTTTATGCCAATTCCTTTTCGTGCAGCACTGAGATTTTAAGACGTTCCTTTATACTAAATTTCTTTTAAGAAAAAGCTTTTGATAATAGTGCGATTCTCTTATCCATCCCTTTTTGAGGTCTGTGTATATGTCTGTTATTTGATTGTCTGATGCCTCATTTAGGAGGAACCTGTTGATAAGACCAAGCATTGGGGTGATTTGGAGGAAGAGGAAGAGGAAGAGGTGGAGGAAGAAGATGAGGAGGTACTTGAAGAAGAAGAAATGGAAGATGGCATTGAATCTGTGGATAGTCTATCGAGGTATGCTATCATTGCCATTTTATTCCTTGGGTTTATGTTTATAAAGACTTTTTGTAATTATCCCTTAGGTCTCATTTTGTTTAACTTGAGCACCGTTTTAGTGTAGTTGCTGTTGAGCTTTTCTGGGGGTTCTTTTTTATTTTATTCTACTTTTTGTGTGTATCTTTCATTTATTTGGCTTTTTATCCCAAAAAAGAACAAAAAACATTGTCATCTTATGTCAATTGAGATTTCTATTCTCCGGATTGATTATTGTCTATCCGGATTCTGGACCTCTGTGATTATCCTTTAATCTGTTCAATAATTGAGATTTCTGTTTCATGCAGCACTCCTACTGGTGTGGAGACACCCGATGTTATTGACCTTCGGAAACAACAGAGGAAGGAACCGGACAGGCCCCTTTACCAAGTAAGTAAACAGTCTGTGAATGTTAATTTATTTTTATCAGAACTTGCCCTCTCTCTATTTTCCTTTTTCAAACTGTAATGTCTCTTTTATTTGTTTGGTTTTTGAAGGTCCTTGAAGAAAAGGAAGAGAGAGTTGCTCCTGGGACTTTGCTTGGAACTACACATACGTATGCAATTTTTTTGCTTTTATCTTTTTATGATAGCCATCTAACTTTTCTTTCTTTTTGTGCTTAAATTTGACACTTTGATGTGTATGTCTCTCTTCAGTTATGTTATTAGCGGCGGTACTCAAGATAAGATGGGAGCCAAAAGGGTAAGGAACTTTTTGATGTTTCATGTTAAATATGTAAAGGGTGATTACTTATTGTTCGACAATAAGTTAATCTGTCTTTTTGTGGCTATTTATCTTGTAGGTTGATTTGCTTAGAGGTCAAAAATCTGATAAAGTGGATGTTACTTTACGACCCGAAGAATTGGAAGCTATGGAAAACGTTCTACCTGCCAAGTACGTGATGTCACCTAGATGTATAGTTTTGGCATTCATGTCATACTGCAGGTGCCAGCTCCTAATTCTCTTTGTTCTCTTTTCACAGGTATGAGGAAGCTAGGGAAGAGGAGAAGTTACGGAGTCAGAGGGAGGACTTCAGCGACATGGTTGCAGAGGTCCAATTTTTCCTTTTTCTTTTTTATTTTTTATCTAATGAATTAACCAAACAGTTCTTTATTCTTTGTTTTTCGGGAAAAAGAGAAGAGGTGGAAATTTTTTCATACTTGAAATTGTTACGGTGATTTATTTTGTTGAACGTATTTTGATCCGGAAAAATTTCTTGCAGAATGAGAAGAAAAGAAAACGTAAGATGCAAGAGAAGGAAGGAAAGTCTAAGAAGAAGGATTTCAAGTTCTAGGCAATCTTTTGTTACAGTAATCAAACCACTCTATCAAATACGACTGCCATGCCCGTCGTGCTTTTACTTGAAGAAGCTGGCTTCTGCATTTGTGGAGATGTTTCAATCTTGTGTAGTATCAAATCTGTGCTATCCTATATAAACTTCAGGATTATGTGGTTCTTCCTAAAACCAGATCCTCTTTACAGGATAATCTACGTAGTTAGTCGCATACGACTCTTCAGTGGAAGTAGTTTGTCATATTTAGTAGGTTCTGTATTCGTTATTTTCGATTCCCGAGCTTAGAAATGTGGCTGCTCTGCTGTGACTTAACTGAACAGTAGCTACGATGGAAGAAGAGATGGATCATCCACAATGAGTTTTACGCTGTTTTGTCATGGCTGCCATGCCTGTTGTACTTCAAACACCAATTAAATCCATGAAAAAGCATAAAATGGTGTTGAGTTATGGCTGCTTGACTACAATTTTTTAAATTCTTTTGAAATGCCAATTAAATTTGAGTTGTTTACAAGAAGGTAATTGTTCCAAACTGATTAAATTTACGTTTATTTATTTTTTGAAAGAAAAA

mRNA sequence

CACTTGAAAAACCCATCTTAGCTTTAAAAGAGGGGCAATTCAGACTTTTCAAATCTCCCATTACCCTCTCTGAATAACTTCATCACTGTAATTTGGCGTCCGTTCAATTTCTCTCTTTTGGAATTCAGCTCTGCAACACACACACACGCGGAGAAGGATTTTTGAGATTTCTCCTCCTCCACCACCTGCCTGATTCTCTCTCAACATACTTCTACGATTTTTCGCCGCTACCTCCGCGTTGCCTCTCGTTTCTGCCCTCGCCGGAGAACCAAAGAGAAACCCTGCCTCCCGTCTTGCCCTTACTATCCTCCACCGCCGTGGCCTTGCCGGAAACAGTTGCGTGTGCGGTTTGTTTATTGATCGATTTGTGCGAAGACTGAATCCGAGCATGACTGCGGAGGTTTCTCAGCCAAATGGAGTTGTCTCGAACCACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCACGAGAAAGTGAACGACGTCGTCGTCGACGAAAGCAGAAGAAGAACCAGAAGGCTTCTAAGGTGAAGGAGGCTGCTGGTGGAGAAGATAGTGACGCTTCCGGCGACGACACGAAGGAGAACGATGATCCACTGCAGGTTGCTGAGAAAGTAGAAATCGAATATGTACCTGAGAAGGCCGAACTAGACGATAGCTTGGATGAAGACTTTAGGAAAGTTTTTGAGAAATTCAGTTTCAGTGAGGTTGCTGGTGCTGAGGAGAATGAAAAAAAAGATGAGTCTGCCCAAAATGCAGCATCTAAGAAGTCAGACTCGGATTCTGAATATGAAGAACTTGATAATCAACAAAAGGAAAAAGGCTTGTCAAACAAGAAAAAGAAGCTGCAACGGCGTATGAAGATTGCAGAGTTGAAGCAGATTTGTTCGAGACCAGATGTTGTTGAGATCTGGGATGCAACTGCAGCTGATCCCAAGTTACTTGTTTATCTAAAATCTTATCGCAACACAGTTCCTGTGCCAAGGCATTGGTGTCAGAAAAGGAAATTTTTACAGGGGTGTGGCTGTGACACTGTTGGAGCCGGAACTTGTAGGTGTTTGCTAAGAGCACCCATGGATTATTTCTATTTTAGTATATTTTGTGGTGTGGGCTGGGATGGGAAGCGTGGTATCGAAAAACAGCCATTCCAACTTCCAGATTTTATTGCAGCAACAGGAATTGAGAAGATTAGACAGGCCTACATAGAAAAAGAGGATAGTAAGAAATTGAAGCAAAAGCAAAGAGAACGAATGCAGCCAAAGATGGGAAAGATGGATATCGATTATCAGGTACTTCATGATGCTTTTTTTAAGTACCAAACAAAGCCAAAGCTGACAACTCTTGGAGATTTGTACTATGAAGGCAAAGAGTTTGAGGTTAAGTTAAGGGAGATGAAACCAGGCATGCTGTCACAAGAACTGAAAGAAGCGCTTGGTATGCCAGAAGGCGCTCCTCCTCCATGGCTCATCAACATGCAGAGATATGGTCCTCCACCATCCTATCCAGATCTAAAGATTCCAGGACTCAATGCTCCTATTCCACCTGGAGCTAGCTTTGGTTACCATCCTGGTGGCTGGGGCAAGCCTCCTGTGGATGAATATGGCCGTCCCCTGTATGGAGACGTGTTTGGTGTTCAGCAGCAGGAGCAAGCTAACTATGAGGAGGAACCTGTTGATAAGACCAAGCATTGGGGTGATTTGGAGGAAGAGGAAGAGGAAGAGGTGGAGGAAGAAGATGAGGAGGTACTTGAAGAAGAAGAAATGGAAGATGGCATTGAATCTGTGGATAGTCTATCGAGCACTCCTACTGGTGTGGAGACACCCGATGTTATTGACCTTCGGAAACAACAGAGGAAGGAACCGGACAGGCCCCTTTACCAAGTCCTTGAAGAAAAGGAAGAGAGAGTTGCTCCTGGGACTTTGCTTGGAACTACACATACTTATGTTATTAGCGGCGGTACTCAAGATAAGATGGGAGCCAAAAGGGTTGATTTGCTTAGAGGTCAAAAATCTGATAAAGTGGATGTTACTTTACGACCCGAAGAATTGGAAGCTATGGAAAACGTTCTACCTGCCAAGTATGAGGAAGCTAGGGAAGAGGAGAAGTTACGGAGTCAGAGGGAGGACTTCAGCGACATGGTTGCAGAGAATGAGAAGAAAAGAAAACGTAAGATGCAAGAGAAGGAAGGAAAGTCTAAGAAGAAGGATTTCAAGTTCTAGGCAATCTTTTGTTACAGTAATCAAACCACTCTATCAAATACGACTGCCATGCCCGTCGTGCTTTTACTTGAAGAAGCTGGCTTCTGCATTTGTGGAGATGTTTCAATCTTGTGTAGTATCAAATCTGTGCTATCCTATATAAACTTCAGGATTATGTGGTTCTTCCTAAAACCAGATCCTCTTTACAGGATAATCTACGTAGTTAGTCGCATACGACTCTTCAGTGGAAGTAGTTTGTCATATTTAGTAGGTTCTGTATTCGTTATTTTCGATTCCCGAGCTTAGAAATGTGGCTGCTCTGCTGTGACTTAACTGAACAGTAGCTACGATGGAAGAAGAGATGGATCATCCACAATGAGTTTTACGCTGTTTTGTCATGGCTGCCATGCCTGTTGTACTTCAAACACCAATTAAATCCATGAAAAAGCATAAAATGGTGTTGAGTTATGGCTGCTTGACTACAATTTTTTAAATTCTTTTGAAATGCCAATTAAATTTGAGTTGTTTACAAGAAGGTAATTGTTCCAAACTGATTAAATTTACGTTTATTTATTTTTTGAAAGAAAAA

Coding sequence (CDS)

ATGACTGCGGAGGTTTCTCAGCCAAATGGAGTTGTCTCGAACCACTTGGACCTTAATTCTAACCCTAAATCTGGCGCCGCCAAGAAGTCACGAGAAAGTGAACGACGTCGTCGTCGACGAAAGCAGAAGAAGAACCAGAAGGCTTCTAAGGTGAAGGAGGCTGCTGGTGGAGAAGATAGTGACGCTTCCGGCGACGACACGAAGGAGAACGATGATCCACTGCAGGTTGCTGAGAAAGTAGAAATCGAATATGTACCTGAGAAGGCCGAACTAGACGATAGCTTGGATGAAGACTTTAGGAAAGTTTTTGAGAAATTCAGTTTCAGTGAGGTTGCTGGTGCTGAGGAGAATGAAAAAAAAGATGAGTCTGCCCAAAATGCAGCATCTAAGAAGTCAGACTCGGATTCTGAATATGAAGAACTTGATAATCAACAAAAGGAAAAAGGCTTGTCAAACAAGAAAAAGAAGCTGCAACGGCGTATGAAGATTGCAGAGTTGAAGCAGATTTGTTCGAGACCAGATGTTGTTGAGATCTGGGATGCAACTGCAGCTGATCCCAAGTTACTTGTTTATCTAAAATCTTATCGCAACACAGTTCCTGTGCCAAGGCATTGGTGTCAGAAAAGGAAATTTTTACAGGGGTGTGGCTGTGACACTGTTGGAGCCGGAACTTGTAGGTGTTTGCTAAGAGCACCCATGGATTATTTCTATTTTAGTATATTTTGTGGTGTGGGCTGGGATGGGAAGCGTGGTATCGAAAAACAGCCATTCCAACTTCCAGATTTTATTGCAGCAACAGGAATTGAGAAGATTAGACAGGCCTACATAGAAAAAGAGGATAGTAAGAAATTGAAGCAAAAGCAAAGAGAACGAATGCAGCCAAAGATGGGAAAGATGGATATCGATTATCAGGTACTTCATGATGCTTTTTTTAAGTACCAAACAAAGCCAAAGCTGACAACTCTTGGAGATTTGTACTATGAAGGCAAAGAGTTTGAGGTTAAGTTAAGGGAGATGAAACCAGGCATGCTGTCACAAGAACTGAAAGAAGCGCTTGGTATGCCAGAAGGCGCTCCTCCTCCATGGCTCATCAACATGCAGAGATATGGTCCTCCACCATCCTATCCAGATCTAAAGATTCCAGGACTCAATGCTCCTATTCCACCTGGAGCTAGCTTTGGTTACCATCCTGGTGGCTGGGGCAAGCCTCCTGTGGATGAATATGGCCGTCCCCTGTATGGAGACGTGTTTGGTGTTCAGCAGCAGGAGCAAGCTAACTATGAGGAGGAACCTGTTGATAAGACCAAGCATTGGGGTGATTTGGAGGAAGAGGAAGAGGAAGAGGTGGAGGAAGAAGATGAGGAGGTACTTGAAGAAGAAGAAATGGAAGATGGCATTGAATCTGTGGATAGTCTATCGAGCACTCCTACTGGTGTGGAGACACCCGATGTTATTGACCTTCGGAAACAACAGAGGAAGGAACCGGACAGGCCCCTTTACCAAGTCCTTGAAGAAAAGGAAGAGAGAGTTGCTCCTGGGACTTTGCTTGGAACTACACATACTTATGTTATTAGCGGCGGTACTCAAGATAAGATGGGAGCCAAAAGGGTTGATTTGCTTAGAGGTCAAAAATCTGATAAAGTGGATGTTACTTTACGACCCGAAGAATTGGAAGCTATGGAAAACGTTCTACCTGCCAAGTATGAGGAAGCTAGGGAAGAGGAGAAGTTACGGAGTCAGAGGGAGGACTTCAGCGACATGGTTGCAGAGAATGAGAAGAAAAGAAAACGTAAGATGCAAGAGAAGGAAGGAAAGTCTAAGAAGAAGGATTTCAAGTTCTAG

Protein sequence

MTAEVSQPNGVVSNHLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGEDSDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEKKDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFSIFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKEGKSKKKDFKF

Homology

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BLAST of Lsi11G008920 vs. ExPASy Swiss-Prot
Match: Q13435 (Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2)

HSP 1 Score: 426.4 bits (1095), Expect = 5.5e-118
Identity = 292/622 (46.95%), Postives = 382/622 (61.41%), Query Frame = 0


Query: 32  ESERRRRRRKQKKNQKASKVKEAAGGEDSDASGDDTKE--NDDPLQVAEKVEIEYVPEKA 91
           + E+ R+RR +KK +K  +V+  +     D   D T+   +D P   A  VEIEYV E+ 
Sbjct: 320 KKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGSDSP---AADVEIEYVTEEP 379

Query: 92  ELDDSLDEDFRKVFEKFSFSEVAGAE---ENEKKDESAQNAASKK---------SDSDSE 151
           E+ +     F+++FE F  ++    E   E EK D+   +AA KK         SD DS 
Sbjct: 380 EIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPKKKGFEEEHKDSDDDSS 439

Query: 152 YEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIWDATAADPKLLVYLKSYRN 211
            +E + + +   LS KK +   R  +AELKQ+ +RPDVVE+ D TA DPKLLV+LK+ RN
Sbjct: 440 DDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRN 499

Query: 212 TVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFSIFCGVGWDGKRGIEKQPF 271
           +VPVPRHWC KRK+LQ                                  GKRGIEK PF
Sbjct: 500 SVPVPRHWCFKRKYLQ----------------------------------GKRGIEKPPF 559

Query: 272 QLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKP 331
           +LPDFI  TGI+++R+A  EKE+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKP
Sbjct: 560 ELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKP 619

Query: 332 KLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEG-----APPPWLINMQRYGPP 391
           KLT  GDLYYEGKEFE +L+E KPG LS EL+ +LGMP G      PPPWLI MQRYGPP
Sbjct: 620 KLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPP 679

Query: 392 PSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGVQQQE-QANYEEEP 451
           PSYP+LKIPGLN+PIP   SFGYH GGWGKPPVDE G+PLYGDVFG    E Q   EEE 
Sbjct: 680 PSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEE 739

Query: 452 VDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMED---------GIESVDSLSSTPTGVETP 511
           +D+T  WG+LE  +EE  EEE+EE  +E++ ++         G+ +    SS P G+ETP
Sbjct: 740 IDRTP-WGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETP 799

Query: 512 DVIDLRKQQRKE----PDRP-LYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRV 571
           ++I+LRK++ +E     + P L+ VL EK      G ++G+TH Y +S     K  A   
Sbjct: 800 ELIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPE- 859

Query: 572 DLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEN-----E 614
             L+G     V+V L PEELE     +  KYEE   E++ + ++EDFSDMVAE+     +
Sbjct: 860 --LQG-----VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQ 895

[Close]

BLAST of Lsi11G008920 vs. ExPASy Swiss-Prot
Match: Q9UUI3 (Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap145 PE=1 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-84
Identity = 244/616 (39.61%), Postives = 331/616 (53.73%), Query Frame = 0


Query: 16  LDLNSNPKSGAAKKSRESERRRRRR--KQKKNQKASKVKEAAGGEDSDASGDDTKEND-- 75
           L+ N+  K+   KKSR   RR +++  ++K N  A   ++ +  +D     +D   ND  
Sbjct: 34  LERNNKQKN---KKSRNQVRREKKKLLREKTNSGAKLAEKNSDDKDQLTENNDNLYNDKK 93

Query: 76  --------DPLQVAEKVEIEYVPEKAELD--DSLDEDFRKVFEKFSFSEVAGAEENEKKD 135
                   +     + +    + +  ELD  D L E F+ VF +F       A+  EK  
Sbjct: 94  SNGNFYDTNKTDSVDGMVYTTIVDSVELDPNDPLIEQFKDVFNRFK------ADGQEKDF 153

Query: 136 ESAQNAASKKSD----SDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVE 195
           E         SD    S+ E + L  QQ+EK LS KK +  +RM +A+LK +  + DVVE
Sbjct: 154 EDTDKGQIMYSDDEILSEGEEDALQKQQEEK-LSKKKLRKLKRMTVAQLKMLSEKADVVE 213

Query: 196 IWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFY 255
            WD ++ DP  L +LK+Y NTVPVPRHW QKR +L                         
Sbjct: 214 WWDVSSLDPLFLTHLKAYPNTVPVPRHWNQKRDYL------------------------- 273

Query: 256 FSIFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMG 315
                     G+RGIE+Q F+LP +I ATGI ++R A  E E    L+QK RER+QPKMG
Sbjct: 274 ---------SGQRGIERQLFELPSYIRATGIVQMRNAVHENEADMPLRQKMRERVQPKMG 333

Query: 316 KMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEG 375
           K+DIDYQ LHDAFF+YQTKP LT  G+ Y+EGKE E  ++E +PG +S+EL+EALG+  G
Sbjct: 334 KLDIDYQKLHDAFFRYQTKPVLTGFGECYFEGKELEADVKEKRPGDISEELREALGIAPG 393

Query: 376 APPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVF 435
           APPPWL  MQRYGPPPSYPDLKIPG+N PIP GA +G+HPGGWGKPPVD++ RPLYGDVF
Sbjct: 394 APPPWLFAMQRYGPPPSYPDLKIPGVNCPIPTGAQWGFHPGGWGKPPVDQFNRPLYGDVF 453

Query: 436 GVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEED---------EEVLEEEEMEDGIES 495
           G  +         PV  T+HWG+LEE EEEE  EE+         EE+ E E +E+   +
Sbjct: 454 GNVKPRIHAGTGSPV-STQHWGELEEFEEEESSEEEESEDVEYPTEEITERETIEEYQSA 513

Query: 496 VDSLSS------------TPTGVETPDVIDLRKQQRKEPD---RPLYQVLEEKEERVAPG 555
            +  S               + VE  D ++LRK  +   D   R LYQVL EK   ++  
Sbjct: 514 SEPRSQREDLHAEPLTYFNQSNVEV-DNVELRKNTQPSSDAANRDLYQVLPEKSTNIS-- 573

Query: 556 TLLGTTHTYVISGGTQDKMGAKRVDLLRGQKSDKVDVTLR-----PEELEAMENVLPAKY 585
             +G  H Y I    +D +  KR        ++K DV L       +EL  + +    K 
Sbjct: 574 GFMGPQHQYDIP-TAEDTLPQKRNAHSMLSSTNKGDVALNQSSNWQDELSELVSEQAMKV 599

[Close]

BLAST of Lsi11G008920 vs. ExPASy Swiss-Prot
Match: Q02554 (Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CUS1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-29
Identity = 120/403 (29.78%), Postives = 196/403 (48.64%), Query Frame = 0


Query: 91  LDDSLDEDFRKVFEKFSFSEVAGAEENEKKDES-------AQNAASKKSDSDSEYEELDN 150
           +D  L+++F+ V ++F   E    +E  K +++            ++K  ++ E E+  +
Sbjct: 55  VDAKLEKEFKDVLQRFQVQENDTPKEITKDEKNNHVVIVEKNPVMNRKHTAEDELEDTPS 114

Query: 151 QQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIWDATAADPKLLVYLKSYRNTVPVPR 210
              E+ LS +K++   +  +++LK     P ++E +D  A  P LL  +K  +N +PVP 
Sbjct: 115 DGIEEHLSARKRRKTEKPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPS 174

Query: 211 HWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFSIFCGVGWDGKRGIEKQPFQLPDFI 270
           HW  K+++L G           R LL                  GKR     PF+LPD I
Sbjct: 175 HWQSKKEYLSG-----------RSLL------------------GKR-----PFELPDII 234

Query: 271 AATGIEKIR----QAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPK- 330
             T IE++R    Q+ ++ +D K LK+  R R+QPKMG +D+DY+ LHD FFK     K 
Sbjct: 235 KKTNIEQMRSTLPQSGLDGQDEKSLKEASRARVQPKMGALDLDYKKLHDVFFKIGANWKP 294

Query: 331 --LTTLGDLYYEGKEF--EVKLREM----KPGMLSQELKEALGMPEGAPPPWLINMQRYG 390
             L   GD+YYE +    E   + M    +PG +SQEL+  + +PEG  PPW + M+  G
Sbjct: 295 DHLLCFGDVYYENRNLFEETNWKRMVDHKRPGRISQELRAIMNLPEGQLPPWCMKMKDIG 354

Query: 391 PPPSYPDLKIPGLNAPIP--PGASFG-YHPGGWGKPPVDEYGRPLYGDVFGVQQQEQANY 450
            P  YPDLKI GLN  I    G  +G   P    +    + GR  +G +   +  E  N 
Sbjct: 355 LPTGYPDLKIAGLNWDITNLKGDVYGKIIPNHHSRS--KKQGRNYFGALISFETPEFENS 414

Query: 451 EEEP---VDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIE 468
           +E+     +  +    +++E E +++   E++ E    E+ +E
Sbjct: 415 KEDTQANAENGRQDDKIDDEVEHKLDHFQEDISEVTSAEEKLE 421

[Close]

BLAST of Lsi11G008920 vs. ExPASy TrEMBL
Match: A0A1S3B4C3 (splicing factor 3B subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485870 PE=4 SV=1)

HSP 1 Score: 1037.3 bits (2681), Expect = 2.5e-299
Identity = 566/614 (92.18%), Postives = 569/614 (92.67%), Query Frame = 0


Query: 1   MTAEVSQPNGVVSN-HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGED 60
           MT EVSQPNGVVSN  LDLNSNPKSGA KKSRESERRRRRRKQKKNQKASKVKEAAGG+D
Sbjct: 1   MTVEVSQPNGVVSNGDLDLNSNPKSGAVKKSRESERRRRRRKQKKNQKASKVKEAAGGDD 60

Query: 61  SDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEK 120
           SDASGDDTKENDDPLQV EKVEIEYVPEKAELDDSLDEDFRKVFEKF+FSEVAGAEENE 
Sbjct: 61  SDASGDDTKENDDPLQVVEKVEIEYVPEKAELDDSLDEDFRKVFEKFTFSEVAGAEENEN 120

Query: 121 KDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180
           KDESAQNA SKKSDSDS+ EELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW
Sbjct: 121 KDESAQNATSKKSDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180

Query: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFS 240
           DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                          
Sbjct: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ-------------------------- 240

Query: 241 IFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300
                   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM
Sbjct: 241 --------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300

Query: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360
           DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP
Sbjct: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360

Query: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420
           PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV
Sbjct: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420

Query: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTPTGV 480
           QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE LEEEEMEDGIESVDS SSTPTGV
Sbjct: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEELEEEEMEDGIESVDSQSSTPTGV 480

Query: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVDL 540
           ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDK GAKRVDL
Sbjct: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKTGAKRVDL 540

Query: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 600
           LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM
Sbjct: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 580

Query: 601 QEKEGKSKKKDFKF 614
           QEKEGKSKKKDFKF
Sbjct: 601 QEKEGKSKKKDFKF 580

[Close]

BLAST of Lsi11G008920 vs. ExPASy TrEMBL
Match: A0A0A0LMT1 (PSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075450 PE=4 SV=1)

HSP 1 Score: 1033.5 bits (2671), Expect = 3.6e-298
Identity = 564/614 (91.86%), Postives = 568/614 (92.51%), Query Frame = 0


Query: 1   MTAEVSQPNGVVSN-HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGED 60
           MT EVSQPNGVVSN  LDLNSNPKSGA KKSRE+ERRRRRRKQKKNQKASKVKEAAGGED
Sbjct: 1   MTVEVSQPNGVVSNGDLDLNSNPKSGAVKKSRENERRRRRRKQKKNQKASKVKEAAGGED 60

Query: 61  SDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEK 120
           SDASGDDTKENDDPLQV EKVEIEY+PEKAELDDSLDEDFRKVFEKFSFSEVAGAEENE 
Sbjct: 61  SDASGDDTKENDDPLQVVEKVEIEYIPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENED 120

Query: 121 KDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180
           KDESAQNA SKKSDSDS+ EE DNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW
Sbjct: 121 KDESAQNATSKKSDSDSDDEEHDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180

Query: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFS 240
           DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                          
Sbjct: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ-------------------------- 240

Query: 241 IFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300
                   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM
Sbjct: 241 --------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300

Query: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360
           DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP
Sbjct: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360

Query: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420
           PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV
Sbjct: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420

Query: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTPTGV 480
           QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE LEEEEMEDGIESVDS SSTPTGV
Sbjct: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEELEEEEMEDGIESVDSQSSTPTGV 480

Query: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVDL 540
           ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGT+HTYVISGGTQDK GAKRVDL
Sbjct: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTSHTYVISGGTQDKTGAKRVDL 540

Query: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 600
           LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM
Sbjct: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 580

Query: 601 QEKEGKSKKKDFKF 614
           QEKEGKSKKKDFKF
Sbjct: 601 QEKEGKSKKKDFKF 580

[Close]

BLAST of Lsi11G008920 vs. ExPASy TrEMBL
Match: A0A6J1FHL4 (splicing factor 3B subunit 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444220 PE=4 SV=1)

HSP 1 Score: 1017.3 bits (2629), Expect = 2.7e-293
Identity = 559/617 (90.60%), Postives = 569/617 (92.22%), Query Frame = 0


Query: 1   MTAEV-SQPNGVVSN--HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG 60
           MTAEV SQPNGVV+N    DLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG
Sbjct: 1   MTAEVISQPNGVVANGGDFDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG 60

Query: 61  EDSDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEEN 120
           EDSDASGDDTKENDD LQV EKVEIEYVPEKAELDDSLDE+FR+VFEKF+FS+VAG EEN
Sbjct: 61  EDSDASGDDTKENDDLLQVVEKVEIEYVPEKAELDDSLDEEFRRVFEKFNFSDVAGVEEN 120

Query: 121 EKKDESAQNAASKKSDSDSEYEELDNQQKEK-GLSNKKKKLQRRMKIAELKQICSRPDVV 180
           E KDESAQNAASKKSDSDS+ EELDNQQKEK GLSNKKKKLQRRMKIAELKQIC RPDVV
Sbjct: 121 ENKDESAQNAASKKSDSDSDDEELDNQQKEKGGLSNKKKKLQRRMKIAELKQICLRPDVV 180

Query: 181 EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYF 240
           EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                       
Sbjct: 181 EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ----------------------- 240

Query: 241 YFSIFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM 300
                      GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM
Sbjct: 241 -----------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM 300

Query: 301 GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE 360
           GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE
Sbjct: 301 GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE 360

Query: 361 GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV 420
           GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV
Sbjct: 361 GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV 420

Query: 421 FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTP 480
           FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE +EEEEM+DGIESVDSLSSTP
Sbjct: 421 FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEEIEEEEMQDGIESVDSLSSTP 480

Query: 481 TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKR 540
           TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEE+VAPGTLLGTTHTYVISGGTQDK GAKR
Sbjct: 481 TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEEKVAPGTLLGTTHTYVISGGTQDKTGAKR 540

Query: 541 VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 600
           VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK
Sbjct: 541 VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 583

Query: 601 RKMQEKEGKSKKKDFKF 614
           RKMQEK+GKSKKKDFKF
Sbjct: 601 RKMQEKDGKSKKKDFKF 583

[Close]

BLAST of Lsi11G008920 vs. ExPASy TrEMBL
Match: A0A6J1EV51 (splicing factor 3B subunit 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436228 PE=4 SV=1)

HSP 1 Score: 1013.8 bits (2620), Expect = 3.0e-292
Identity = 557/615 (90.57%), Postives = 566/615 (92.03%), Query Frame = 0


Query: 1   MTAEVSQPNGVVSN-HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGED 60
           MTAEVSQ NGVVSN  LDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKV EA  GED
Sbjct: 1   MTAEVSQSNGVVSNGDLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKV-EATAGED 60

Query: 61  SDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEK 120
           SDASGDDTKEND+PLQV EKVEIEYVPEKAELDDSLDE+FRKVFEKFSFSE+AG EENE 
Sbjct: 61  SDASGDDTKENDNPLQVVEKVEIEYVPEKAELDDSLDEEFRKVFEKFSFSEIAGTEENEN 120

Query: 121 KDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180
           KDESAQNAASKKSDSDS+ EELDNQQKEKGLSNKKKKLQRRMKIAELKQIC RPDVVEIW
Sbjct: 121 KDESAQNAASKKSDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICLRPDVVEIW 180

Query: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFS 240
           DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                          
Sbjct: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ-------------------------- 240

Query: 241 IFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300
                   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM
Sbjct: 241 --------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300

Query: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360
           DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLS ELKEALGMP+GAP
Sbjct: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSHELKEALGMPDGAP 360

Query: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420
           PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV
Sbjct: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420

Query: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEV-EEEDEEVLEEEEMEDGIESVDSLSSTPTG 480
           QQQEQANYEEEPVDKTKHWGDLEEEEEEEV EEEDEE LEEEEM+DGIESVDSLSSTPTG
Sbjct: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEEDEEELEEEEMQDGIESVDSLSSTPTG 480

Query: 481 VETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVD 540
           VETPDVIDLRKQQRKEPDRPLYQVLEEKEE+VAPGTLLGTTHTYVISGGTQDK GAKRVD
Sbjct: 481 VETPDVIDLRKQQRKEPDRPLYQVLEEKEEKVAPGTLLGTTHTYVISGGTQDKTGAKRVD 540

Query: 541 LLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRK 600
           LLRGQK+DKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRK
Sbjct: 541 LLRGQKTDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRK 580

Query: 601 MQEKEGKSKKKDFKF 614
           MQEK+GKSKKKDFKF
Sbjct: 601 MQEKDGKSKKKDFKF 580

[Close]

BLAST of Lsi11G008920 vs. ExPASy TrEMBL
Match: A0A6J1K363 (splicing factor 3B subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111491971 PE=4 SV=1)

HSP 1 Score: 1007.3 bits (2603), Expect = 2.8e-290
Identity = 553/615 (89.92%), Postives = 563/615 (91.54%), Query Frame = 0


Query: 1   MTAEVSQPNGVVSN-HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGED 60
           MTAEVSQ NGVVSN  LDLNSNPKSGAAKKSRESERRRRRRKQKKNQK SKV EA  GED
Sbjct: 1   MTAEVSQSNGVVSNCDLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKTSKV-EATAGED 60

Query: 61  SDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEK 120
           SDASGDDTKEND+PLQV EKVEIEYVP+KAELDDSLDE+FRKVFEKFSFSE+AG EENE 
Sbjct: 61  SDASGDDTKENDNPLQVVEKVEIEYVPDKAELDDSLDEEFRKVFEKFSFSEIAGTEENEN 120

Query: 121 KDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180
           KDESAQNAASKKSDSDS+ EELDNQQKEKGLSNKKKKLQRRMKIAELKQIC RPDVVEIW
Sbjct: 121 KDESAQNAASKKSDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICLRPDVVEIW 180

Query: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFS 240
           DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                          
Sbjct: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ-------------------------- 240

Query: 241 IFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300
                   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM
Sbjct: 241 --------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300

Query: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360
           DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLS ELKEALGMP+GAP
Sbjct: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSHELKEALGMPDGAP 360

Query: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420
           PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV
Sbjct: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420

Query: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEV-EEEDEEVLEEEEMEDGIESVDSLSSTPTG 480
           QQQEQANYEEEPVDKTKHWGDLEEEEEEE  EEEDEE LEEEEM+DGIESVDSLSSTPTG
Sbjct: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEAEEEEDEEELEEEEMQDGIESVDSLSSTPTG 480

Query: 481 VETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVD 540
           VETPDVIDLRKQQRKEPDRPLYQVLE KEE+VAPGTLLGTTHTYVISGGTQDK GAKRVD
Sbjct: 481 VETPDVIDLRKQQRKEPDRPLYQVLEAKEEKVAPGTLLGTTHTYVISGGTQDKTGAKRVD 540

Query: 541 LLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRK 600
           LLRGQK+DKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRK
Sbjct: 541 LLRGQKTDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRK 580

Query: 601 MQEKEGKSKKKDFKF 614
           MQEK+GKSKKKDFKF
Sbjct: 601 MQEKDGKSKKKDFKF 580

[Close]

BLAST of Lsi11G008920 vs. NCBI nr
Match: KAG7020995.1 (Splicing factor 3B subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1103.2 bits (2852), Expect = 0.0e+00
Identity = 589/617 (95.46%), Postives = 600/617 (97.24%), Query Frame = 0


Query: 1   MTAEV-SQPNGVVSN--HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG 60
           MTAEV SQPNGVV+N    DLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG
Sbjct: 1   MTAEVISQPNGVVANGGDFDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG 60

Query: 61  EDSDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEEN 120
           EDSDASGDDTKENDD LQV EKVEIEYVPEKAELDDSLDE+FR+VFEKF+FS+VAG EEN
Sbjct: 61  EDSDASGDDTKENDDLLQVVEKVEIEYVPEKAELDDSLDEEFRRVFEKFNFSDVAGVEEN 120

Query: 121 EKKDESAQNAASKKSDSDSEYEELDNQQKEK-GLSNKKKKLQRRMKIAELKQICSRPDVV 180
           E KDESAQNAASKKSDSDS+ EELDNQQKEK GLSNKKKKLQRRMKIAELKQIC RPDVV
Sbjct: 121 ENKDESAQNAASKKSDSDSDDEELDNQQKEKGGLSNKKKKLQRRMKIAELKQICLRPDVV 180

Query: 181 EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYF 240
           EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAP+ YF
Sbjct: 181 EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPLYYF 240

Query: 241 YFSIFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM 300
            FSIF GVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM
Sbjct: 241 CFSIFGGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM 300

Query: 301 GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE 360
           GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE
Sbjct: 301 GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE 360

Query: 361 GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV 420
           GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV
Sbjct: 361 GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV 420

Query: 421 FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTP 480
           FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE +EEEEM+DGIESVDSLSSTP
Sbjct: 421 FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEEIEEEEMQDGIESVDSLSSTP 480

Query: 481 TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKR 540
           TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEE+VAPGTLLGTTHTYVISGGTQDK GAKR
Sbjct: 481 TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEEKVAPGTLLGTTHTYVISGGTQDKTGAKR 540

Query: 541 VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 600
           VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK
Sbjct: 541 VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 600

Query: 601 RKMQEKEGKSKKKDFKF 614
           RKMQEK+GKSKKKDFKF
Sbjct: 601 RKMQEKDGKSKKKDFKF 617

[Close]

BLAST of Lsi11G008920 vs. NCBI nr
Match: XP_038890808.1 (splicing factor 3B subunit 2 [Benincasa hispida] >XP_038890809.1 splicing factor 3B subunit 2 [Benincasa hispida] >XP_038890810.1 splicing factor 3B subunit 2 [Benincasa hispida])

HSP 1 Score: 1038.1 bits (2683), Expect = 3.0e-299
Identity = 568/614 (92.51%), Postives = 571/614 (93.00%), Query Frame = 0


Query: 1   MTAEVSQPNGVVSN-HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGED 60
           MTAEVSQPNGVVSN  LDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAA GED
Sbjct: 1   MTAEVSQPNGVVSNGDLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAAGED 60

Query: 61  SDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEK 120
           SDASGDDTKENDDPLQV EKVEIEYVPEKAELDD+LDE+FRKVFEKFSFSEVAGAEENE 
Sbjct: 61  SDASGDDTKENDDPLQVVEKVEIEYVPEKAELDDNLDEEFRKVFEKFSFSEVAGAEENEN 120

Query: 121 KDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180
           KDESAQNAASKKSDSDS+ EELD QQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW
Sbjct: 121 KDESAQNAASKKSDSDSDDEELDIQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180

Query: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFS 240
           DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                          
Sbjct: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ-------------------------- 240

Query: 241 IFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300
                   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM
Sbjct: 241 --------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300

Query: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360
           DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP
Sbjct: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360

Query: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420
           PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV
Sbjct: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420

Query: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTPTGV 480
           QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE LEEEEMEDGIESVDSLSSTPTGV
Sbjct: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEELEEEEMEDGIESVDSLSSTPTGV 480

Query: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVDL 540
           ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDK GAKRVDL
Sbjct: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKTGAKRVDL 540

Query: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 600
           LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM
Sbjct: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 580

Query: 601 QEKEGKSKKKDFKF 614
           QEKEGKSKKKDFKF
Sbjct: 601 QEKEGKSKKKDFKF 580

[Close]

BLAST of Lsi11G008920 vs. NCBI nr
Match: XP_008441818.1 (PREDICTED: splicing factor 3B subunit 2 [Cucumis melo])

HSP 1 Score: 1037.3 bits (2681), Expect = 5.2e-299
Identity = 566/614 (92.18%), Postives = 569/614 (92.67%), Query Frame = 0


Query: 1   MTAEVSQPNGVVSN-HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGED 60
           MT EVSQPNGVVSN  LDLNSNPKSGA KKSRESERRRRRRKQKKNQKASKVKEAAGG+D
Sbjct: 1   MTVEVSQPNGVVSNGDLDLNSNPKSGAVKKSRESERRRRRRKQKKNQKASKVKEAAGGDD 60

Query: 61  SDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEK 120
           SDASGDDTKENDDPLQV EKVEIEYVPEKAELDDSLDEDFRKVFEKF+FSEVAGAEENE 
Sbjct: 61  SDASGDDTKENDDPLQVVEKVEIEYVPEKAELDDSLDEDFRKVFEKFTFSEVAGAEENEN 120

Query: 121 KDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180
           KDESAQNA SKKSDSDS+ EELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW
Sbjct: 121 KDESAQNATSKKSDSDSDDEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180

Query: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFS 240
           DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                          
Sbjct: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ-------------------------- 240

Query: 241 IFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300
                   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM
Sbjct: 241 --------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300

Query: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360
           DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP
Sbjct: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360

Query: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420
           PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV
Sbjct: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420

Query: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTPTGV 480
           QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE LEEEEMEDGIESVDS SSTPTGV
Sbjct: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEELEEEEMEDGIESVDSQSSTPTGV 480

Query: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVDL 540
           ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDK GAKRVDL
Sbjct: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKTGAKRVDL 540

Query: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 600
           LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM
Sbjct: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 580

Query: 601 QEKEGKSKKKDFKF 614
           QEKEGKSKKKDFKF
Sbjct: 601 QEKEGKSKKKDFKF 580

[Close]

BLAST of Lsi11G008920 vs. NCBI nr
Match: XP_004152814.1 (splicing factor 3B subunit 2 [Cucumis sativus] >KGN61286.1 hypothetical protein Csa_006058 [Cucumis sativus])

HSP 1 Score: 1033.5 bits (2671), Expect = 7.4e-298
Identity = 564/614 (91.86%), Postives = 568/614 (92.51%), Query Frame = 0


Query: 1   MTAEVSQPNGVVSN-HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGED 60
           MT EVSQPNGVVSN  LDLNSNPKSGA KKSRE+ERRRRRRKQKKNQKASKVKEAAGGED
Sbjct: 1   MTVEVSQPNGVVSNGDLDLNSNPKSGAVKKSRENERRRRRRKQKKNQKASKVKEAAGGED 60

Query: 61  SDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENEK 120
           SDASGDDTKENDDPLQV EKVEIEY+PEKAELDDSLDEDFRKVFEKFSFSEVAGAEENE 
Sbjct: 61  SDASGDDTKENDDPLQVVEKVEIEYIPEKAELDDSLDEDFRKVFEKFSFSEVAGAEENED 120

Query: 121 KDESAQNAASKKSDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180
           KDESAQNA SKKSDSDS+ EE DNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW
Sbjct: 121 KDESAQNATSKKSDSDSDDEEHDNQQKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEIW 180

Query: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYFYFS 240
           DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                          
Sbjct: 181 DATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ-------------------------- 240

Query: 241 IFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300
                   GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM
Sbjct: 241 --------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKM 300

Query: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360
           DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP
Sbjct: 301 DIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPEGAP 360

Query: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420
           PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV
Sbjct: 361 PPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGV 420

Query: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTPTGV 480
           QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE LEEEEMEDGIESVDS SSTPTGV
Sbjct: 421 QQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEELEEEEMEDGIESVDSQSSTPTGV 480

Query: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKRVDL 540
           ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGT+HTYVISGGTQDK GAKRVDL
Sbjct: 481 ETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTSHTYVISGGTQDKTGAKRVDL 540

Query: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 600
           LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM
Sbjct: 541 LRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKM 580

Query: 601 QEKEGKSKKKDFKF 614
           QEKEGKSKKKDFKF
Sbjct: 601 QEKEGKSKKKDFKF 580

[Close]

BLAST of Lsi11G008920 vs. NCBI nr
Match: XP_022937998.1 (splicing factor 3B subunit 2-like [Cucurbita moschata])

HSP 1 Score: 1017.3 bits (2629), Expect = 5.5e-293
Identity = 559/617 (90.60%), Postives = 569/617 (92.22%), Query Frame = 0


Query: 1   MTAEV-SQPNGVVSN--HLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG 60
           MTAEV SQPNGVV+N    DLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG
Sbjct: 1   MTAEVISQPNGVVANGGDFDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGG 60

Query: 61  EDSDASGDDTKENDDPLQVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEEN 120
           EDSDASGDDTKENDD LQV EKVEIEYVPEKAELDDSLDE+FR+VFEKF+FS+VAG EEN
Sbjct: 61  EDSDASGDDTKENDDLLQVVEKVEIEYVPEKAELDDSLDEEFRRVFEKFNFSDVAGVEEN 120

Query: 121 EKKDESAQNAASKKSDSDSEYEELDNQQKEK-GLSNKKKKLQRRMKIAELKQICSRPDVV 180
           E KDESAQNAASKKSDSDS+ EELDNQQKEK GLSNKKKKLQRRMKIAELKQIC RPDVV
Sbjct: 121 ENKDESAQNAASKKSDSDSDDEELDNQQKEKGGLSNKKKKLQRRMKIAELKQICLRPDVV 180

Query: 181 EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPMDYF 240
           EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ                       
Sbjct: 181 EIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQ----------------------- 240

Query: 241 YFSIFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM 300
                      GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM
Sbjct: 241 -----------GKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKM 300

Query: 301 GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE 360
           GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE
Sbjct: 301 GKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALGMPE 360

Query: 361 GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV 420
           GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV
Sbjct: 361 GAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDV 420

Query: 421 FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEVLEEEEMEDGIESVDSLSSTP 480
           FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEE +EEEEM+DGIESVDSLSSTP
Sbjct: 421 FGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEEDEEEIEEEEMQDGIESVDSLSSTP 480

Query: 481 TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDKMGAKR 540
           TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEE+VAPGTLLGTTHTYVISGGTQDK GAKR
Sbjct: 481 TGVETPDVIDLRKQQRKEPDRPLYQVLEEKEEKVAPGTLLGTTHTYVISGGTQDKTGAKR 540

Query: 541 VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 600
           VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK
Sbjct: 541 VDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRK 583

Query: 601 RKMQEKEGKSKKKDFKF 614
           RKMQEK+GKSKKKDFKF
Sbjct: 601 RKMQEKDGKSKKKDFKF 583

[Close]

BLAST of Lsi11G008920 vs. TAIR 10
Match: AT4G21660.2 (proline-rich spliceosome-associated (PSP) family protein )

HSP 1 Score: 778.1 bits (2008), Expect = 5.3e-225
Identity = 446/624 (71.47%), Postives = 510/624 (81.73%), Query Frame = 0


Query: 1   MTAE--VSQPNGVVSNHLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGE 60
           MTA+  V+  + VVSN  D+++   S ++KKSRE +RRRRRRKQKKN KAS+    A  +
Sbjct: 1   MTADSTVALVHSVVSNG-DVSNGNTSASSKKSREIDRRRRRRKQKKNNKASQ----ADVD 60

Query: 61  DSDAS-GDDTKENDDPL-QVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEE 120
            SD S   ++KEN DP  QV E++ IEYVPE+AE +D  +++F+++FEKF+F E   +EE
Sbjct: 61  ASDVSAASESKENTDPQPQVCEQIVIEYVPEQAEFEDGFNDEFKEIFEKFNFREPLASEE 120

Query: 121 NEKKDESAQNAASKK---SDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRP 180
           +  KDES +    KK   SDSDS+ +E DNQ KEKG+SNKKKKLQRRMKIAELKQ+ +RP
Sbjct: 121 DGTKDESEEKEDVKKKVNSDSDSDDDEQDNQNKEKGISNKKKKLQRRMKIAELKQVSARP 180

Query: 181 DVVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPM 240
           DVVE+WDAT+ADPKLLV+LKSYRNTVPVPRHW QKRK+LQG   + +      C      
Sbjct: 181 DVVEVWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKYLQG---NYIKRDRNVC------ 240

Query: 241 DYFYFSIFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQ 300
                         GKRGIEKQPF LPDFIAATGIEKIRQAYIEKED KKLKQKQRERMQ
Sbjct: 241 -----------DNHGKRGIEKQPFHLPDFIAATGIEKIRQAYIEKEDGKKLKQKQRERMQ 300

Query: 301 PKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALG 360
           PKMGKMDIDYQVLHDAFFKYQTKPKL+ LGDLY+EGKEFEVKLRE KPG LS +LKEALG
Sbjct: 301 PKMGKMDIDYQVLHDAFFKYQTKPKLSALGDLYFEGKEFEVKLRETKPGFLSNDLKEALG 360

Query: 361 MPEGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLY 420
           MPEGAPPPWLINMQRYGPPPSYP LKIPGLNAPIP GASFG+H GGWGKPPVDEYGRPLY
Sbjct: 361 MPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPIGASFGFHAGGWGKPPVDEYGRPLY 420

Query: 421 GDVFGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEED--EEVLEEEEMEDGIESVDS 480
           GDVFGVQQQ+Q NYEEEP+DK+KHWGDLEEEEEEE EEE+  EE ++EEE+EDG ESVD+
Sbjct: 421 GDVFGVQQQDQPNYEEEPIDKSKHWGDLEEEEEEEEEEEEEQEEEMDEEELEDGTESVDT 480

Query: 481 LSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDK 540
           LSSTPTG+ETPD I+LRK QRKEPDR LYQVLEEK E VAPGTLLGT+HTYVI  GTQ+K
Sbjct: 481 LSSTPTGIETPDAIELRKDQRKEPDRALYQVLEEKGESVAPGTLLGTSHTYVIKTGTQEK 540

Query: 541 MGAKRVDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEN 600
            GAKRVDLLRGQK+D+VDV+L+PEEL+AMENVLPAKYEEAREEEKLR++  D SDMV E+
Sbjct: 541 TGAKRVDLLRGQKTDRVDVSLQPEELDAMENVLPAKYEEAREEEKLRNKPVDLSDMVVEH 598

Query: 601 --EKKRKRKMQEKEGKSKKKDFKF 614
             +  RKRKM +KEGK KKKDFKF
Sbjct: 601 VQQNSRKRKMHDKEGK-KKKDFKF 598

[Close]

BLAST of Lsi11G008920 vs. TAIR 10
Match: AT4G21660.1 (proline-rich spliceosome-associated (PSP) family protein )

HSP 1 Score: 776.2 bits (2003), Expect = 2.0e-224
Identity = 444/624 (71.15%), Postives = 506/624 (81.09%), Query Frame = 0


Query: 1   MTAE--VSQPNGVVSNHLDLNSNPKSGAAKKSRESERRRRRRKQKKNQKASKVKEAAGGE 60
           MTA+  V+  + VVSN  D+++   S ++KKSRE +RRRRRRKQKKN KAS+    A  +
Sbjct: 1   MTADSTVALVHSVVSNG-DVSNGNTSASSKKSREIDRRRRRRKQKKNNKASQ----ADVD 60

Query: 61  DSDAS-GDDTKENDDPL-QVAEKVEIEYVPEKAELDDSLDEDFRKVFEKFSFSEVAGAEE 120
            SD S   ++KEN DP  QV E++ IEYVPE+AE +D  +++F+++FEKF+F E   +EE
Sbjct: 61  ASDVSAASESKENTDPQPQVCEQIVIEYVPEQAEFEDGFNDEFKEIFEKFNFREPLASEE 120

Query: 121 NEKKDESAQNAASKK---SDSDSEYEELDNQQKEKGLSNKKKKLQRRMKIAELKQICSRP 180
           +  KDES +    KK   SDSDS+ +E DNQ KEKG+SNKKKKLQRRMKIAELKQ+ +RP
Sbjct: 121 DGTKDESEEKEDVKKKVNSDSDSDDDEQDNQNKEKGISNKKKKLQRRMKIAELKQVSARP 180

Query: 181 DVVEIWDATAADPKLLVYLKSYRNTVPVPRHWCQKRKFLQGCGCDTVGAGTCRCLLRAPM 240
           DVVE+WDAT+ADPKLLV+LKSYRNTVPVPRHW QKRK+LQ                    
Sbjct: 181 DVVEVWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKYLQ-------------------- 240

Query: 241 DYFYFSIFCGVGWDGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQ 300
                         GKRGIEKQPF LPDFIAATGIEKIRQAYIEKED KKLKQKQRERMQ
Sbjct: 241 --------------GKRGIEKQPFHLPDFIAATGIEKIRQAYIEKEDGKKLKQKQRERMQ 300

Query: 301 PKMGKMDIDYQVLHDAFFKYQTKPKLTTLGDLYYEGKEFEVKLREMKPGMLSQELKEALG 360
           PKMGKMDIDYQVLHDAFFKYQTKPKL+ LGDLY+EGKEFEVKLRE KPG LS +LKEALG
Sbjct: 301 PKMGKMDIDYQVLHDAFFKYQTKPKLSALGDLYFEGKEFEVKLRETKPGFLSNDLKEALG 360

Query: 361 MPEGAPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLY 420
           MPEGAPPPWLINMQRYGPPPSYP LKIPGLNAPIP GASFG+H GGWGKPPVDEYGRPLY
Sbjct: 361 MPEGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPIGASFGFHAGGWGKPPVDEYGRPLY 420

Query: 421 GDVFGVQQQEQANYEEEPVDKTKHWGDLEEEEEEEVEEED--EEVLEEEEMEDGIESVDS 480
           GDVFGVQQQ+Q NYEEEP+DK+KHWGDLEEEEEEE EEE+  EE ++EEE+EDG ESVD+
Sbjct: 421 GDVFGVQQQDQPNYEEEPIDKSKHWGDLEEEEEEEEEEEEEQEEEMDEEELEDGTESVDT 480

Query: 481 LSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEEKEERVAPGTLLGTTHTYVISGGTQDK 540
           LSSTPTG+ETPD I+LRK QRKEPDR LYQVLEEK E VAPGTLLGT+HTYVI  GTQ+K
Sbjct: 481 LSSTPTGIETPDAIELRKDQRKEPDRALYQVLEEKGESVAPGTLLGTSHTYVIKTGTQEK 540

Query: 541 MGAKRVDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEKLRSQREDFSDMVAEN 600
            GAKRVDLLRGQK+D+VDV+L+PEEL+AMENVLPAKYEEAREEEKLR++  D SDMV E+
Sbjct: 541 TGAKRVDLLRGQKTDRVDVSLQPEELDAMENVLPAKYEEAREEEKLRNKPVDLSDMVVEH 584

Query: 601 --EKKRKRKMQEKEGKSKKKDFKF 614
             +  RKRKM +KEGK KKKDFKF
Sbjct: 601 VQQNSRKRKMHDKEGK-KKKDFKF 584

[Close]

BLAST of Lsi11G008920 vs. TAIR 10
Match: AT1G11520.1 (pliceosome associated protein-related )

HSP 1 Score: 153.3 bits (386), Expect = 6.3e-37
Identity = 85/114 (74.56%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 464 DGIESVDSLSSTPTGVETPDVIDLRKQQRKEPDRPLYQVLEEK-EERVAPGTLLGTTHTY 523
           D ++   SLSSTPTG+ETPD I+LRK+QRKEPDR LYQVLEEK E  VAPGTLL TTHTY
Sbjct: 85  DAMDVSKSLSSTPTGIETPDAIELRKEQRKEPDRALYQVLEEKGESVVAPGTLLRTTHTY 144

Query: 524 VISGGTQDKMGAKRVDLLRGQKSDKVDVTLRPEELEAMENVLPAKYEEAREEEK 577
           VI  GTQDK G KRVDLLRGQK+D+VD +L+PEEL+AM NVL  +YEEAREEEK
Sbjct: 145 VIKTGTQDKTGTKRVDLLRGQKTDRVDFSLQPEELDAMGNVL--QYEEAREEEK 196

The following BLAST results are available for this feature:

BLAST of Lsi11G008920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q13435	5.5e-118	46.95	Splicing factor 3B subunit 2 OS=Homo sapiens OX=9606 GN=SF3B2 PE=1 SV=2	[more]
Q9UUI3	1.4e-84	39.61	Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q02554	6.2e-29	29.78	Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Lsi11G008920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4C3	2.5e-299	92.18	splicing factor 3B subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485870 PE=4 SV=1	[more]
A0A0A0LMT1	3.6e-298	91.86	PSP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075450 PE=4 SV...	[more]
A0A6J1FHL4	2.7e-293	90.60	splicing factor 3B subunit 2-like OS=Cucurbita moschata OX=3662 GN=LOC111444220 ...	[more]
A0A6J1EV51	3.0e-292	90.57	splicing factor 3B subunit 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436228 ...	[more]
A0A6J1K363	2.8e-290	89.92	splicing factor 3B subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111491971 PE...	[more]

BLAST of Lsi11G008920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020995.1	0.0e+00	95.46	Splicing factor 3B subunit 2, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_038890808.1	3.0e-299	92.51	splicing factor 3B subunit 2 [Benincasa hispida] >XP_038890809.1 splicing factor...	[more]
XP_008441818.1	5.2e-299	92.18	PREDICTED: splicing factor 3B subunit 2 [Cucumis melo]	[more]
XP_004152814.1	7.4e-298	91.86	splicing factor 3B subunit 2 [Cucumis sativus] >KGN61286.1 hypothetical protein ...	[more]
XP_022937998.1	5.5e-293	90.60	splicing factor 3B subunit 2-like [Cucurbita moschata]	[more]

BLAST of Lsi11G008920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21660.2	5.3e-225	71.47	proline-rich spliceosome-associated (PSP) family protein	[more]
AT4G21660.1	2.0e-224	71.15	proline-rich spliceosome-associated (PSP) family protein	[more]
AT1G11520.1	6.3e-37	74.56	pliceosome associated protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 147..167
None	No IPR available	COILS	Coil	Coil	coord: 124..144
None	No IPR available	COILS	Coil	Coil	coord: 441..463
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..467
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 567..613
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 426..498
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..441
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 247..613
None	No IPR available	PANTHER	PTHR12785:SF13	SPLICING FACTOR 3B SUBUNIT 2-LIKE	coord: 247..613
None	No IPR available	PANTHER	PTHR12785	SPLICING FACTOR 3B	coord: 11..214
None	No IPR available	PANTHER	PTHR12785:SF13	SPLICING FACTOR 3B SUBUNIT 2-LIKE	coord: 11..214
IPR006568	PSP, proline-rich	SMART	SM00581	testneu	coord: 336..389 e-value: 1.2E-27 score: 107.8
IPR006568	PSP, proline-rich	PFAM	PF04046	PSP	coord: 340..385 e-value: 3.8E-22 score: 77.9
IPR007180	Domain of unknown function DUF382	PFAM	PF04037	DUF382	coord: 172..214 e-value: 3.3E-15 score: 56.4 coord: 248..331 e-value: 6.0E-36 score: 123.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G008920.1	Lsi11G008920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005684	U2-type spliceosomal complex
cellular_component	GO:0005634	nucleus