Lsi11G008900 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G008900
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPeroxisome biogenesis protein 12
Locationchr11: 11775407 .. 11779698 (+)
RNA-Seq ExpressionLsi11G008900
SyntenyLsi11G008900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGACTCGAGGGCTATTTATTGAACTTTTTTGTTTTGTTTTGTTTTGCTTTGTTTTTTCAACTGTTTTTTCTTGAGTACATATGCGGTTCACATCATATTGGTTTTAATGTTTTAAAGTTTCAATATTGTTTCCTACATATTTTGAAGTTATAGTGTTTTTATCTACTTTAGACTTGACTATTTATATTTATTAAATTGAAACTTACGATACACAATACGTTGCAAACACTAAATTTTGATTGTGATACTCATTCTATTTCACGAGTTAACAACCTTGCATAATATGCAATAAATCTTATCTTACAAAAGATAGGAAGGAAATCCAATACTCTCCCTCAAGTTGATTTGTAATCTTTCATAGCCAGCTTGTTGATAAACAATACTTTGATGAGTGTATTTTGGAATATCAATATAAATAAAAATATATAAATGGACGATTTCATTCACTGACTAAGCAATGGGAAAAGAGATGGTCTGGAAAAGAAAGGGTTGACTACATTTGATGACCTCCACAACGAAGGAATCATAGTCTCTCTCTCTCTCTCTCTATATATATATATATAAAGATAGATAGATAGGCTTCTAACATAAATGGTTTAATAATCTAACTTTTTGAGGAATATCCTGTCTCCAAATGCTTTGAAGGGGTTATTGGCTTTTGAGTATTTCTCTATTGGTTATAAAGGAGTCGAAGGACTTGCAGGTGTAATTTATGGAGTTGTACAGGGTCCATACTATTCTCGTATTCCAGCAGTCATCAACGGAGTGGAGGCATATTTAGTTTTGGAGAGCGGGGGTATAGTGTAGGAATTCTAACCATTCGACAGTGGGCAGGTGACATCCCATACTTGGTCTTACCCCATGTTTCCATTTCATTTTCTAGACAGTGTGCAGCAAGTGTGAGTGCACATGGTGCAAGGCCGCATGCATGCACAGTGACGACCATCCATGAGCAAGGCTAGGCTTGCTCTTCACAGTGTCTAGCGTGGATGGGTGGGATGCATGAGTTTGATGAAACGTCGCCCACCCCATCATACGCTGGCGCTGATTTGCACGCACTTAGTTCACTGGGTGGGCAGCCCAGCCATGGGCCGCTGTTGGTGCATCTGTAAGCACTTTGACTTCCATCACCTTGAGAGGTTAAGCAAGACCTTGGAAATTATGAAGGATACAAGTGTCTTGCCCAAGGGTTGGTCTCCTTCCAACCATTGTAACTGTGAATTGCCCTTCTTTTGCCATCGACGATCCCTTGTAGACTTGGCTAGCGTCAATCTTAGTTTGCCGTTTCCTTTTGGTCCCTTGATCTGACCCGATCCCTTCATCATGGAGTTACTCAAAATATTTATGGGTTGAAGGTCTAACAAGCGATCCCAAGGTTTGTCACAAAGGTTTGTCATGGACCGAATATTGAGACTCCTTGACAGAGAGTACTTAGCCAAGATTCAAAGACTTGCTCCATACTTACAATTTTGGGAACCTCGTAAGATCTTCAGGATCTTGGCTATGTATACTGTTAAAGACTTTATATGATGACAAGAAGGATGGTGTGGTTCATTTGTTACATCCGAAATAAATATATTTGTTCTATATTGTCTTTTGAATCTTGGCAACATCCGCCAACTTTTGAGTAAAGAGATTGGTTGACTAGTTTTGATGGCTGATCTGATGAGAGAGTTACTTTGTTTAGTTAGTACTTGGCAACTTGTTAATACATCAAAATTTCAACTGCATGTATTAATCTCTAGATTTTGTCATTGTTAGTTTCACAGTGGTCCTTTTCAACTTTTAGAGCTAATTTCATTTTCTACCCTCATTCAATATATTATGCTTAAAGTGTACTTTATTCATGTCAACACAGGCAATACAAGGAGGACTCCTCACTTGTTTGTACACGATGCTAGATTATGCACAGACCGGATTAATTGCAGCAGTATTTTTCTTCAAAGTGAGTCCTTGATCTGTCCAATATCGTATGAGTTGCTTTTAAATATCTGTTATAAAAGTGACAAACCCTTATATGAAAAATAATATGTAACTTTGAATTTTGATTAATACAATAACACAATTATTTTTATCATCCACTTGTCATTTTTTTCAATCTAATTATAATTATATACATAATACAAGAGTGATCTTGGATCTTTTTATTTTTGTTTCAGAAGTCTTGATTTGAATGCCGCTAGAATGTGTTTGCTTTTAGCATTTATTGATTATTGATAGTATGAATTGCTTATTTTGATCATTTTTACATTGCATAATGACTTTATGACGTAATCTGATTAGATGATGGAGTGGTGGTACCAATCTGCTGAAGAACGAATGTCTGCACCAACTGTATACCCCCCCCCACCTCCTCCTCCTCCTCCAAAGGTGAAGTACTTTTTCCTTAATATCACAGGGTTTTGTGCTCTTTTATGATAATACATATTTGTATTTATGTGTGTATTACCTATTCAAATACAAACCCTTAAGTGTTGATATAAACAGGTAGCCAAGGAAGGGATTCCACTGCCGCCCAACAGAACAATTTGCCCTTTGTGCTCAGAGAAACGAGCCAATCCGTCAGTTGTCACTGTTTCTGGCTTTGTCTTTTGTTACACCTGCATCTTCAAGTATATTTCACAGGTATGCCCTTAACTACTGTCAACTCTAAACATCTATTTAACTTTTTTCCCCCCTTGTACTTTGTCCTTTCCGTATTGGAATCTTGTTTGAGGAGTAATTTGACTGCTGCGTAGCAGTGATATTGGTTTGGTTTTCTTCGGTTTTAGGCTAAACTGAGTACCAAACCAAACCAATTAGTTTAGTTAAAATAGGAATCAAATTAATGTCCAATAAAGGTAAAACAGTCGGTTCGGTCATATGAGGTTTTAAAATTATGGTTTTGTCCATTTTTCCTATTTATAACCAAACTTCCTTAACAAACTACTTAACTAATTATTAATATACCTTTAATATCCCTCTAACACCCTTCCTATCACAATAATAATAATAAAGCATGGCAACTATCATTTGATCTGTTCTCTTTCCAATTTCAAATACATTTTTGATATTCTATTCAAAATTTGAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAATACAAATCACGGGTGTTCAAAACTTGTCTAAATTTCAGTTAGTAACCACTCAATGGAAAAAACAATAGACTTTATAAGCATCATTTCAAGAACACAACATAATGGACAAAATTGTTATCAAACGAGACTTTAGTAACTGAAGTAAAAATTGCTTCCATGATATATAAGATGAACTCTGTCTTTTAACGGCGCTACTTGTTTACTTGGGTGAAATGCATCTAATGGTTGTAATCTTGTGTTTATTTATGCATTGGACCAGTACAAGCGCTGCCCAATCACATTAATGCCTGCAAATGCTGATCACATTAGGAGGCTCTTCCATGATATGTGAAGAACTTGAGGGACATAATAATTCAAGGATTAATGGCTGCCATCTTCTCAAAGATCTAGGAGACTTCTTGTTGGCAAATCTGCAGACTTGAGGAAATAAACTTTACAATTGTTCATTATGTAGTTTATAATAATTCTTGATGGTTGAAACTATCTATCTATAGAGTATAGGATATGAAATCACTAGTTATATAGTTCTTAGTAATATGCTGTTTAGGATTATAACAAGGTTTCAATTTTTTTGAAATATCAAAGAATATATCAGATGTTGTAAAAAAAATTTATGAAAACCAAGATGCATCTATAAATTCGATTAACAAATGATGATATTACACAT

mRNA sequence

ATGGGAGTCGAAGGACTTGCAGGTGTAATTTATGGAGTTGTACAGGGTCCATACTATTCTCGTATTCCAGCAGTCATCAACGGAGTGGAGGCATATTTAGTTTTGGAGAGCGGGGCGTGGATGGGTGGGATGCATGAGTTTGATGAAACGTCGCCCACCCCATCATACGCTGGCGCTGATTTGCACGCACTTAGTTCACTGGGTGGGCAGCCCAGCCATGGGCCGCTGTTGGTAGCCAAGGAAGGGATTCCACTGCCGCCCAACAGAACAATTTGCCCTTTGTGCTCAGAGAAACGAGCCAATCCGTCAGTTGTCACTGTTTCTGGCTTTGTCTTTTGTTACACCTGCATCTTCAAGTATATTTCACAGTACAAGCGCTGCCCAATCACATTAATGCCTGCAAATGCTGATCACATTAGGAGGCTCTTCCATGATATGTGAAGAACTTGAGGGACATAATAATTCAAGGATTAATGGCTGCCATCTTCTCAAAGATCTAGGAGACTTCTTGTTGGCAAATCTGCAGACTTGAGGAAATAAACTTTACAATTGTTCATTATGTAGTTTATAATAATTCTTGATGGTTGAAACTATCTATCTATAGAGTATAGGATATGAAATCACTAGTTATATAGTTCTTAGTAATATGCTGTTTAGGATTATAACAAGGTTTCAATTTTTTTGAAATATCAAAGAATATATCAGATGTTGTAAAAAAAATTTATGAAAACCAAGATGCATCTATAAATTCGATTAACAAATGATGATATTACACAT

Coding sequence (CDS)

ATGGGAGTCGAAGGACTTGCAGGTGTAATTTATGGAGTTGTACAGGGTCCATACTATTCTCGTATTCCAGCAGTCATCAACGGAGTGGAGGCATATTTAGTTTTGGAGAGCGGGGCGTGGATGGGTGGGATGCATGAGTTTGATGAAACGTCGCCCACCCCATCATACGCTGGCGCTGATTTGCACGCACTTAGTTCACTGGGTGGGCAGCCCAGCCATGGGCCGCTGTTGGTAGCCAAGGAAGGGATTCCACTGCCGCCCAACAGAACAATTTGCCCTTTGTGCTCAGAGAAACGAGCCAATCCGTCAGTTGTCACTGTTTCTGGCTTTGTCTTTTGTTACACCTGCATCTTCAAGTATATTTCACAGTACAAGCGCTGCCCAATCACATTAATGCCTGCAAATGCTGATCACATTAGGAGGCTCTTCCATGATATGTGA

Protein sequence

MGVEGLAGVIYGVVQGPYYSRIPAVINGVEAYLVLESGAWMGGMHEFDETSPTPSYAGADLHALSSLGGQPSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADHIRRLFHDM
Homology
[Close]
BLAST of Lsi11G008900 vs. ExPASy Swiss-Prot
Match: Q9M841 (Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana OX=3702 GN=PEX12 PE=1 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-27
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 78  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANAD 137
           +AKEGIPLPP+R++C LC +KRANPSVVTVSGFVFCY+C+FKY+S+YKRCP+TL+PA+ D
Sbjct: 325 MAKEGIPLPPDRSLCALCLQKRANPSVVTVSGFVFCYSCVFKYVSKYKRCPVTLIPASVD 384

Query: 138 HIRRLFHD 146
            IRRLF D
Sbjct: 385 QIRRLFQD 392

[Close]
BLAST of Lsi11G008900 vs. ExPASy Swiss-Prot
Match: Q19189 (Putative peroxisome assembly protein 12 OS=Caenorhabditis elegans OX=6239 GN=prx-12 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 33/73 (45.21%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P H  ++   E + L  N+  CP+C +KR N + + VSG+VFCYTCI +Y++ Y +CP+T
Sbjct: 288 PPHKMIISESEILSLDTNK--CPICLKKRVNDTALFVSGYVFCYTCINQYVNTYNKCPVT 347

Query: 131 LMPANADHIRRLF 144
             PAN  H+ RLF
Sbjct: 348 GCPANVQHLIRLF 358

[Close]
BLAST of Lsi11G008900 vs. ExPASy Swiss-Prot
Match: Q54N40 (Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum OX=44689 GN=pex12 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 28/65 (43.08%), Postives = 48/65 (73.85%), Query Frame = 0 

Query: 79  AKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANADH 138
           A  G+ +P ++ +CPLC ++R NP++   SGFVFCY CIF Y++++ +CPIT +P N + 
Sbjct: 393 APGGLEIPRDKRLCPLCLKERTNPTICG-SGFVFCYPCIFGYVNEHSKCPITFLPTNTEQ 452

Query: 139 IRRLF 144
           +R+++
Sbjct: 453 LRKIY 456

[Close]
BLAST of Lsi11G008900 vs. ExPASy Swiss-Prot
Match: Q8VC48 (Peroxisome assembly protein 12 OS=Mus musculus OX=10090 GN=Pex12 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-12
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 56  YAGADLHALSSLGGQPSHGP---LLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVF 115
           Y+  +  A+ SL   P+  P   L    +   LP  +T+CPLC + R N +V+  SG+VF
Sbjct: 265 YSSENQEAIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVF 324

Query: 116 CYTCIFKYISQYKRCPITLMPANADHIRRLF 144
           CY C+F Y+  ++ CPIT  P    H+ +L+
Sbjct: 325 CYRCVFNYVRSHQACPITGYPTEVQHLIKLY 355

[Close]
BLAST of Lsi11G008900 vs. ExPASy Swiss-Prot
Match: A4FUD4 (Peroxisome assembly protein 12 OS=Bos taurus OX=9913 GN=PEX12 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-12
Identity = 32/91 (35.16%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 56  YAGADLHALSSLGGQPSHGP---LLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVF 115
           Y+  +   + SL   P+  P   L    +   LP  +T+CPLC + R N +V+  SG+VF
Sbjct: 265 YSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKNRVNDTVLATSGYVF 324

Query: 116 CYTCIFKYISQYKRCPITLMPANADHIRRLF 144
           CY C+F Y+  ++ CPIT  P    H+ +L+
Sbjct: 325 CYRCVFHYVRSHQACPITGYPTEVQHLIKLY 355

[Close]
BLAST of Lsi11G008900 vs. ExPASy TrEMBL
Match: A0A6J1K3G6 (Peroxisome biogenesis protein 12 OS=Cucurbita maxima OX=3661 GN=LOC111492029 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.9e-33
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPIT
Sbjct: 317 PPPPPPKVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYVSQYKRCPIT 376

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 377 LMPANVDHIRRLFHDM 392

[Close]
BLAST of Lsi11G008900 vs. ExPASy TrEMBL
Match: A0A6J1EV91 (Peroxisome biogenesis protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111436261 PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.9e-33
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPIT
Sbjct: 317 PPPPPPKVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYVSQYKRCPIT 376

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 377 LMPANVDHIRRLFHDM 392

[Close]
BLAST of Lsi11G008900 vs. ExPASy TrEMBL
Match: A0A0A0LJL9 (Peroxisome biogenesis protein 12 OS=Cucumis sativus OX=3659 GN=Csa_2G075430 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.7e-33
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCS+KRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT
Sbjct: 318 PPPPPPKVAKEGIPLPPNRTICPLCSDKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 377

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DH+RRLFHDM
Sbjct: 378 LMPANVDHVRRLFHDM 393

[Close]
BLAST of Lsi11G008900 vs. ExPASy TrEMBL
Match: A0A1S3B4B4 (Peroxisome biogenesis protein 12 OS=Cucumis melo OX=3656 GN=LOC103485872 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 8.7e-33
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCS+KRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT
Sbjct: 318 PPPPPPKVAKEGIPLPPNRTICPLCSDKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 377

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DH+RRLFHDM
Sbjct: 378 LMPANVDHVRRLFHDM 393

[Close]
BLAST of Lsi11G008900 vs. ExPASy TrEMBL
Match: A0A6J1D9B7 (Peroxisome biogenesis protein 12 OS=Momordica charantia OX=3673 GN=LOC111018219 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.1e-32
Identity = 68/76 (89.47%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKR NPSV+TVSGFVFCYTCIFKYISQYKRCPIT
Sbjct: 258 PPPPPPKVAKEGIPLPPNRTICPLCSEKRVNPSVITVSGFVFCYTCIFKYISQYKRCPIT 317

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 318 LMPANVDHIRRLFHDM 333

[Close]
BLAST of Lsi11G008900 vs. NCBI nr
Match: KAG6598946.1 (Peroxisome biogenesis protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 8.0e-33
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPIT
Sbjct: 301 PPPPPPKVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYVSQYKRCPIT 360

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 361 LMPANVDHIRRLFHDM 376

[Close]
BLAST of Lsi11G008900 vs. NCBI nr
Match: XP_022996952.1 (peroxisome biogenesis protein 12 [Cucurbita maxima])

HSP 1 Score: 151.0 bits (380), Expect = 8.0e-33
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPIT
Sbjct: 317 PPPPPPKVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYVSQYKRCPIT 376

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 377 LMPANVDHIRRLFHDM 392

[Close]
BLAST of Lsi11G008900 vs. NCBI nr
Match: KAG7029900.1 (Peroxisome biogenesis protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 8.0e-33
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPIT
Sbjct: 367 PPPPPPKVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYVSQYKRCPIT 426

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 427 LMPANVDHIRRLFHDM 442

[Close]
BLAST of Lsi11G008900 vs. NCBI nr
Match: XP_022929775.1 (peroxisome biogenesis protein 12 [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 8.0e-33
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPIT
Sbjct: 317 PPPPPPKVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYVSQYKRCPIT 376

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 377 LMPANVDHIRRLFHDM 392

[Close]
BLAST of Lsi11G008900 vs. NCBI nr
Match: XP_023546945.1 (peroxisome biogenesis protein 12 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.0 bits (380), Expect = 8.0e-33
Identity = 69/76 (90.79%), Postives = 70/76 (92.11%), Query Frame = 0 

Query: 71  PSHGPLLVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPIT 130
           P   P  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKY+SQYKRCPIT
Sbjct: 317 PPPPPPKVAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYVSQYKRCPIT 376

Query: 131 LMPANADHIRRLFHDM 147
           LMPAN DHIRRLFHDM
Sbjct: 377 LMPANVDHIRRLFHDM 392

[Close]
BLAST of Lsi11G008900 vs. TAIR 10
Match: AT3G04460.1 (peroxin-12 )

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-28
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 78  VAKEGIPLPPNRTICPLCSEKRANPSVVTVSGFVFCYTCIFKYISQYKRCPITLMPANAD 137
           +AKEGIPLPP+R++C LC +KRANPSVVTVSGFVFCY+C+FKY+S+YKRCP+TL+PA+ D
Sbjct: 325 MAKEGIPLPPDRSLCALCLQKRANPSVVTVSGFVFCYSCVFKYVSKYKRCPVTLIPASVD 384

Query: 138 HIRRLFHD 146
            IRRLF D
Sbjct: 385 QIRRLFQD 392

The following BLAST results are available for this feature:
BLAST of Lsi11G008900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M8414.0e-2775.00Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana OX=3702 GN=PEX12 PE=1 S... [more]
Q191891.5e-1345.21Putative peroxisome assembly protein 12 OS=Caenorhabditis elegans OX=6239 GN=prx... [more]
Q54N401.5e-1343.08Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum OX=44689 GN=... [more]
Q8VC481.6e-1236.26Peroxisome assembly protein 12 OS=Mus musculus OX=10090 GN=Pex12 PE=1 SV=1[more]
A4FUD44.8e-1235.16Peroxisome assembly protein 12 OS=Bos taurus OX=9913 GN=PEX12 PE=2 SV=1[more]
BLAST of Lsi11G008900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K3G63.9e-3390.79Peroxisome biogenesis protein 12 OS=Cucurbita maxima OX=3661 GN=LOC111492029 PE=... [more]
A0A6J1EV913.9e-3390.79Peroxisome biogenesis protein 12 OS=Cucurbita moschata OX=3662 GN=LOC111436261 P... [more]
A0A0A0LJL98.7e-3389.47Peroxisome biogenesis protein 12 OS=Cucumis sativus OX=3659 GN=Csa_2G075430 PE=3... [more]
A0A1S3B4B48.7e-3389.47Peroxisome biogenesis protein 12 OS=Cucumis melo OX=3656 GN=LOC103485872 PE=3 SV... [more]
A0A6J1D9B71.1e-3289.47Peroxisome biogenesis protein 12 OS=Momordica charantia OX=3673 GN=LOC111018219 ... [more]
BLAST of Lsi11G008900 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598946.18.0e-3390.79Peroxisome biogenesis protein 12, partial [Cucurbita argyrosperma subsp. sororia... [more]
XP_022996952.18.0e-3390.79peroxisome biogenesis protein 12 [Cucurbita maxima][more]
KAG7029900.18.0e-3390.79Peroxisome biogenesis protein 12, partial [Cucurbita argyrosperma subsp. argyros... [more]
XP_022929775.18.0e-3390.79peroxisome biogenesis protein 12 [Cucurbita moschata][more]
XP_023546945.18.0e-3390.79peroxisome biogenesis protein 12 [Cucurbita pepo subsp. pepo][more]
BLAST of Lsi11G008900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G04460.12.9e-2875.00peroxin-12 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 80..143
e-value: 3.2E-7
score: 32.0
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 92..129
e-value: 6.1E-7
score: 29.2
NoneNo IPR availablePANTHERPTHR12888:SF3PEROXISOME BIOGENESIS PROTEIN 12coord: 77..145
NoneNo IPR availableCDDcd16451mRING_PEX12coord: 92..133
e-value: 1.95444E-19
score: 74.1489
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 91..142
IPR017375Peroxisome assembly protein 12PANTHERPTHR12888PEROXISOME ASSEMBLY PROTEIN 12 PEROXIN-12coord: 77..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G008900.1Lsi11G008900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006513 protein monoubiquitination
biological_process GO:0006625 protein targeting to peroxisome
cellular_component GO:0005779 integral component of peroxisomal membrane
cellular_component GO:1990429 peroxisomal importomer complex
molecular_function GO:0008022 protein C-terminus binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding