Lsi11G008790 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G008790
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr11: 11468351 .. 11472981 (+)
RNA-Seq Expression	Lsi11G008790
Synteny	Lsi11G008790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGCAACGCTCCATCCAATCCAAATACGGTGGATCTCTATATTTCTCAACCAAACATCACAAATCAAACATCGACAAGAGAAATTGAAAATAATATAGAGGTCGAAAATGTGGAAGGTGGTCTAGAGCAACCATTTGACGATGAAGAGGAAAATTTGGACCAAGCTATTGCCACAAATTTAGAAGAAGTTGAAATAGATGATGATGAAAGTGATCTAGAGCAGCCATCTGACGGATTGTATGGTGTTCATGATGTTCCTAAAACCTTTAATGAGATAGACCTGAGTGACATTAATATTGAACTTGATTCAGTGATTGAGAGACAAAATATTGGATCTGATTCTTTGAGTAAAGGGATGGTATTTAACTCAAAGTTCGATATGAAAAATGCAGTGAAAAGTTATTCAATCAGTCGTCATCAAAATTTTGAAGTAGTTGAGTAAAGAGATACGGTAATGGTTGCACGTGGAGACTACATGCCTGCTGCCGTAAAAAACATGGTAAATTTGAAATTACACAATATAATGACCCTCATTCTTGTGTTTATGCAAAAATGAGTCAAGATCACAGTCAATTGGACTCCAATTTGATTGCAGCTGAAGTGGGTAGTATTGTTAAAAAAAAATCAATCTGTTAATGTTAGAACATTATATAATATTATATTACAAAAATATGGATATCCTGTTAGTTCTTGGAAAGTATGGGATGGAAGACGGAAAGCAATTGCCAATATATTTGGAGATTGGATTGAATCGTACAATTTGCTGCCTGCGTGGATGAATATATTAGAAATGACCAACCCTGGTACAATTTTCCACTGGAGGCTAAATGAGGTAGAGGGTGATGACAGGATTGTCATGTTCAACAGCGTGTTTTGGTCATTCGAACTCGTTATTGAGGGTTTCAAGCATTGCAACCACTACTTCAGATTGATGGAACGCATTTATATGGGAAGTACGAAGGGAAATTGTTGATAGCTACCTCAGTTGATGCAAATGGACACGTTTATCCAATTGTGTTTCCCATTGTACTAGAGGAAAGTGCTAATTCATGGGGATGGTTCTTGAAAAATATATGGGATCACGTGGTACATGGAAGGAAGGAAATGTGTCTGATTTCAGATAGACACAAGGGTATTATATCTACCCTGCGAAACCAAAACAAAAGTTGGGCAGATGCACAACACAGATTCTGCTTGCGACATGTTGCAAGTAATTCCAACGACAAATATAAGAATAATATGTTAAAGAACATGGTGGATCGTGCAGGATCAAAGTATCAAGTTCGGAAGTTCAATGATTGTATGGCCGAACTACAGAAAGCGAACTCTAACTGCGTAAGGCTTTTTGCTTCTATGGATCCTAAATAGTGGACCCAGTCACATGATGGTGGTCATCGTTATGGATAGATGACCACAAACGTAGTTGAATGTTATAATGTTGTTTTAAAAGGAGCCAGGAAGCTACCAATAACTGCACTAGTTCAAGCAACATTCTATCAGACTATCTCTTACTTTACTACTCGTCGTGTAGAAATAGAAGCTGCACTTGAGTTTGGAGAATGTTTCACGAGGTTAAGTATCCACCTATAAAATATTTTTAATGTTCGTATGGGCTATTAAATATAGTAAACAATTTTCATATATGTTATAGGTATGCAATTAAGAAGTTAACTTGTTGGGAAGGACGTGCAAATACACACGTAGTTAACATTTTTTATTAGAGGACAGGACTGTGTGATGTCACCATTGCAATTAATCCAATAATACTAAAGGGTGGAACCACACATCGAGTAAAATTGAGTGAAAAGATATGCACATGTAATAAATGACAAAGTTACGGAATCACATGTTCTCATGCCATTGCTGCATGTAAAAAAATTGGTCTTGATGACCTGTACTACATAGAAGAATACTACAAGACCCCCACTTATTTATCATGCTATTCACCTCAGTTTGAGCCTATACCTGATCGAAAGTGTTGGCCAGACCCAAACTTTCCTACTAAGACAAGGGTAAGAAATGTTGGAAGACCATGTACTTTCTGAATACACAATGAGATGGATTGGAGAGAGGCACCAGTGAAGTCACGGTGTGACATTTGCAGACAAGAAGGACATAATCGAAAAGGATGTCCCAACCGTGATCGTAATGCGACATAGTTAATTACTACACATGTTGAATGTAAATTATTTCTTTGATGGGTAATACAAATTAGTACACATGTTGAATGTAAATTTTTTTTTGATGAGCAATACAAATGAAATAGCTTTGTTCCAGTAATTATTAATATTAATTGTTACACCATATTAAATGTGTTTGTTAATTATAATATTATATTAATTATTTTTGTTAATTGTTGTGTTATGTAAATTACATTAGATGGACGAAGGTATTAGCACAGGACCGTATGATTATTCGATTTTAACCCTACAAGGTAATCATCGATCTCAAGCTGTTTGGCAAGACGAGCATATTGATGCTATGCATTGTCGACGTCGCTGTTGTTTGGAGGCAAGAAGACCCAGACCCTCGTATTTTCGATTATTTACGAGCATCTGGATTTTATGGAGTTGCATATATTAAATTTATACAATTAGACTGACATTTGATAACAGCATTAGTAGAACGGTGGCGACAAGAGACGCATACATTTCACCTGTTGCATGGAGAGTATACGATTACTCTAGAAGATGTAGCCATCCAGTTTGGATTTCCGATTAATGGACGAACATTGATCAGGTCACTTAATTATAACTGGGAACAAGTATGTTACAATCTGTTAGGAGTAACAACAAATGACAACGTTCTTAAAGGAGATCGTCTTAGTCTGCCATGACTATCCCAACAATTTAACAACTTCGCCCATCTACCAGCTGATGCTGATGAAGAGCAACTCCAACGATATGCTCGAGCTTATATTCTTACATTGATTGGAGGATTGATATTTCCTGATAAAACCAATAATAGAGTGCACCTGATGTATCTCCCCCTACTAGTAGATTTTTATGTTGCTGGGACATATAGTTGGGGGTTGGTTGTCTTGCATGGCTATATAGACAGTTATGCAAAAGTGCAGTTATCGATGCCAAAGACATAGTAAGTCCTCTTCTGATACTGCAAATTTGGGCATGGGATTAGTTTCCTCTTCTAGCACCTCGACGACTCCACCGATATGAAAACAATTTGGGTGATAGACCACTAGCAGTACGGTAATCATTTTTAACTCATTAACATTTAATCTTTATATTTTATATCGTGACTTCATAACCATTAATATTTGATTTCTATTTGTTGTAGGTGGAATGACGACTTTTCTGTTATCAGATCGCCTATGCATGTGTTAGTTCAATATAGATACATATTAGATACATTTGCCCCTAACCAAGTAAGATCATATTCTTTTATAACACATCTATTTATAATATTTCATTTTGTTGACTCACTCTTTGAATCTTAAACATATGCAGATTATTTGGGAGCTATATAACCATTTAATTCATAGATTGCCACCATACTGTCTCCAAGGTCATGAGATATGGACATCCAGGTGTCCACTCATATGTTTTTTTGTGGTAGAGTGGTATTACCCAGATCGTGTGATGCGCTAGTTTGGGAGGTTGCAACGAATTCCAGAACCTTGCGATACGGACAAACGACTACATTTGCACGATCTACGAGGCAGACATGAGCGAGATTGGATTTCATATTTGGCTCCTCAAATATCAATTTGGGAGAATCGACATAATTGGATTGTTAGTGGACCTCCCATTAACAATGGTATAGATATTGAGCCTGGATACATTGATTGATATTCTAATATTAGCAGGCGATACATAACGAAAACAGGAGCAGCGTATCACTTTTTGGTATGAGTTTCTTGTTTACTAGGATGATTTCATTTTATTCTTTAATTTCTATATTAAATGTTCTAATATATTTCAGCAATATTTTACAAATATGTCATTATCTGAAAGAACGGCTGCAATGGCTAGAATAGCTAAAACTGCCTTGCGTATAATCACATCGATATATAGAGTACGATATTTCGAAGGCGATGTCCCTGATGAAGAACAGGGTGATCCCGCTAGACATCAGGATGTTCCAATTCAACCTAATGTTCAAGATGAGTATCCGACAACTCCAGGCGATCATTTTACACCTGGTTCCATGATGCCAACACCATCAACATTTGAACTTTTTCCAACAACTCTCAATATGCTAAATATGGAAGAAGGCCAAACTTCGCAAGCTCCTCGTCAAGATGTTTATGATCAATATATGACATACCGACATCATAATGAGGATATACAATTTACAGACGAATGCCAACCATCAAATGTAAGAGGTCATGGAGATCGTGGACATTATATAACTCAACAAGGTCGATTTAGGCGTAACATGGGATCTTCTGCTGGACAAGAATAAACACATCGTAGTTGTATTCTAATATTGTTAAAGTTTGAACTGTATTTTTTATTTAATAATTGATTAGCCTTTTTAGCCATTAAGTCATATGAAAAATTAAGTAATCAAACCTTTGAATTTAGCAAACGTATTACACCTAATTCCAAACTCGAGTTACAACAATTGACATGTGTGGTCAAAAAGAATAAAATACATTAAAAG

mRNA sequence

ATGATGAGCAACGCTCCATCCAATCCAAATACGGTGGATCTCTATATTTCTCAACCAAACATCACAAATCAAACATCGACAAGAGAAATTGAAAATAATATAGAGGTCGAAAATGTGGAAGGTGGTCTAGAGCAACCATTTGACGATGAAGAGGAAAATTTGGACCAAGCTATTGCCACAAATTTAGAAGAAGTTGAAATAGATGATGATGAAAGTGATCTAGAGCAGCCATCTGACGGATTGTATGGTGTTCATGATGTTCCTAAAACCTTTAATGAGATAGACCTGAGTGACATTAATATTGAACTTGATTCAGTGATTGAGAGACAAAATATTGGATCTGATTCTTTGAGTAAAGGGATGGTGGAATGACGACTTTTCTGTTATCAGATCGCCTATGCATGTGTTAGTTCAATATAGATACATATTAGATACATTTGCCCCTAACCAAATTATTTGGGAGCTATATAACCATTTAATTCATAGATTGCCACCATACTGTCTCCAAGGTCATGAGATATGGACATCCAGGTGTCCACTCATATGTTTTTTTGTGGTAGAGTGGTATTACCCAGATCGTGTGATGCGCTAGTTTGGGAGGTTGCAACGAATTCCAGAACCTTGCGATACGGACAAACGACTACATTTGCACGATCTACGAGGCAGACATGAGCGAGATTGGATTTCATATTTGGCTCCTCAAATATCAATTTGGGAGAATCGACATAATTGGATTGTTAGTGGACCTCCCATTAACAATGGTATAGATATTGAGCCTGGATACATTGATTGATATTCTAATATTAGCAGGCGATACATAACGAAAACAGGAGCAGCGTATCACTTTTTGAACGGCTGCAATGGCTAGAATAGCTAAAACTGCCTTGCGTATAATCACATCGATATATAGAGTACGATATTTCGAAGGCGATGTCCCTGATGAAGAACAGGGTGATCCCGCTAGACATCAGGATGTTCCAATTCAACCTAATGTTCAAGATGAGTATCCGACAACTCCAGGCGATCATTTTACACCTGGTTCCATGATGCCAACACCATCAACATTTGAACTTTTTCCAACAACTCTCAATATGCTAAATATGGAAGAAGGCCAAACTTCGCAAGCTCCTCGTCAAGATGTTTATGATCAATATATGACATACCGACATCATAATGAGGATATACAATTTACAGACGAATGCCAACCATCAAATGTAAGAGGTCATGGAGATCGTGGACATTATATAACTCAACAAGGTCGATTTAGGCGTAACATGGGATCTTCTGCTGGACAAGAATAAACACATCGTAGTTGTATTCTAATATTGTTAAAGTTTGAACTGTATTTTTTATTTAATAATTGATTAGCCTTTTTAGCCATTAAGTCATATGAAAAATTAAGTAATCAAACCTTTGAATTTAGCAAACGTATTACACCTAATTCCAAACTCGAGTTACAACAATTGACATGTGTGGTCAAAAAGAATAAAATACATTAAAAG

Coding sequence (CDS)

ATGATGAGCAACGCTCCATCCAATCCAAATACGGTGGATCTCTATATTTCTCAACCAAACATCACAAATCAAACATCGACAAGAGAAATTGAAAATAATATAGAGGTCGAAAATGTGGAAGGTGGTCTAGAGCAACCATTTGACGATGAAGAGGAAAATTTGGACCAAGCTATTGCCACAAATTTAGAAGAAGTTGAAATAGATGATGATGAAAGTGATCTAGAGCAGCCATCTGACGGATTGTATGGTGTTCATGATGTTCCTAAAACCTTTAATGAGATAGACCTGAGTGACATTAATATTGAACTTGATTCAGTGATTGAGAGACAAAATATTGGATCTGATTCTTTGAGTAAAGGGATGGTGGAATGA

Protein sequence

MMSNAPSNPNTVDLYISQPNITNQTSTREIENNIEVENVEGGLEQPFDDEEENLDQAIATNLEEVEIDDDESDLEQPSDGLYGVHDVPKTFNEIDLSDINIELDSVIERQNIGSDSLSKGMVE

Homology

[Close]

BLAST of Lsi11G008790 vs. ExPASy TrEMBL
Match: A0A5D3D569 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00410 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 2   MSNAPSNPNTVDLYISQPNITNQTSTREIENNIEVENVEGGLEQPFDDEEENLDQAIATN 61
           MSNAP  P+ V+LYISQPN+++     E  N  +  N         +++ +  D  IATN
Sbjct: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCN---------NEQYDCFDPTIATN 60

Query: 62  LEEVEIDDDESDLEQPSDGLYGVHDVPKTFNEIDLSDINIELDSVIERQNIGSDSLSKGM 121
           +E  E+DDD+SD++QP   L+GVHDVP+ FN IDL+++N   D+ ++ +N+GS+ L   M
Sbjct: 61  VEVAEVDDDDSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEENLGSEHLMVDM 112

Query: 122 V 123
           +
Sbjct: 121 L 112

[Close]

BLAST of Lsi11G008790 vs. NCBI nr
Match: XP_038877923.1 (uncharacterized protein LOC120070133 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 2.5e-19
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 1   MMSNAPSNPNTVDLYISQPNITNQTSTREIENNIEVENVEGGLEQPFDDEEENLDQAIAT 60
           MMSNAP  PN V+LYISQP++ + TSTRE     EVE VE  LE     E+E+ D  IAT
Sbjct: 88  MMSNAPYPPNRVELYISQPSVPSPTSTRE-----EVETVE--LESHV-VEDEHYDPTIAT 147

Query: 61  NLEEVEIDDDESDLEQPSDGLYGVHDVPKTFNEIDLSDINIELDSVI-ERQNIGSDSLSK 120
           N EEV++DDD+ DL+Q S   YGVH+VP+TF EIDL+++  E DS   E  N+GSDSL K
Sbjct: 148 NDEEVKMDDDDIDLDQLSSQFYGVHEVPETFTEIDLNEMTTEPDSTTGEDSNMGSDSLLK 202

Query: 121 GMV 123
           GM+
Sbjct: 208 GMI 202

[Close]

BLAST of Lsi11G008790 vs. NCBI nr
Match: TYK18693.1 (hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-14
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 0


Query: 2   MSNAPSNPNTVDLYISQPNITNQTSTREIENNIEVENVEGGLEQPFDDEEENLDQAIATN 61
           MSNAP  P+ V+LYISQPN+++     E  N  +  N         +++ +  D  IATN
Sbjct: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCN---------NEQYDCFDPTIATN 60

Query: 62  LEEVEIDDDESDLEQPSDGLYGVHDVPKTFNEIDLSDINIELDSVIERQNIGSDSLSKGM 121
           +E  E+DDD+SD++QP   L+GVHDVP+ FN IDL+++N   D+ ++ +N+GS+ L   M
Sbjct: 61  VEVAEVDDDDSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEENLGSEHLMVDM 112

Query: 122 V 123
           +
Sbjct: 121 L 112

The following BLAST results are available for this feature:

BLAST of Lsi11G008790 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G008790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D569	2.0e-14	41.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lsi11G008790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877923.1	2.5e-19	56.10	uncharacterized protein LOC120070133 [Benincasa hispida]	[more]
TYK18693.1	4.1e-14	41.32	hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi11G008790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G008790.1	Lsi11G008790.1	mRNA