Lsi11G008650 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G008650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	GDT1 family protein
Location	chr11: 11135663 .. 11140258 (+)
RNA-Seq Expression	Lsi11G008650
Synteny	Lsi11G008650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAAGAAAACGCTTTTAATTCACCACTTTCTAACCCGTTGGTCAAAACATTTACTCTGAAAAAAATATATTTAAATAAATATAAAAAAGCTTCCATGATTTTGGCTATGGTGGATCTCTAGCTTCGAAGAAGGATCTCCCTTTCTCTTTATCTCTGTATCGCGAATTCAAGTTGTGGTGGTGTAAAATTGCAGCAAAGCAATGCAGATCTGATCTTCCCTTTTCAATTGAGAGATCCCACCCTCTCAATTTCTTCTCCGATTCAGATCCCCGTCTCTCTACAAACAACTAACTCCATCCACTATCTTCTTAATCCCTTTTTCTTCAATGGGTTTGCGTTCAAACCCTACTGCAAACCTCTCTTTCTCTCCTTCTTTTCTCCTCCTTTTGCTTCTTCTTTCTCTCTTTGCCTCCCTTCAGGTACTCATCTAACATTTCTCTTCCTTTTCTTTCTTTCTTTATTGCCTTCTTATGTGGGGTTTGATTTCTATTCTTTGTTGGGTGTTTTTAAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTCGGTCGACGTAGCAAGGTGAGTACGATTCATTATCTTTCTTGTTATGTTTTGTATAAATTGGTTTTATGGTGATTGTGAAATTCTTGGTGGATTGTGAATCTGCGGTGCCGGCCATGGCAGGAGGGGGTTTTGGGGTTATATTCAGATTGAGATCTTTGTGCTTTTTCACTTAATTGTTTTCCTTCTTGTACATTGTAAATATAACCATTGAGATACACTCTTGAACGTTGTAGACTTTTTACTACCTGTTTATGTATGAAAGGGAAAAAAAAAAACAATTGTAATTCCAGGGGGCTGTGAGGAAGATGGCATTGTGATATTTTGTGCCATGTAGCTAATACCGTTTAACTTTGCGTGTATTGATTTCACTAGGTGGTGCTGGTTCTGTTTTGAAGAACTTGAAGAAGGCCAACTGACTTGGGTTTAGGATTTTTTAGGAGCTTGTTGGGAGTGTTTCCAGAATGTGACTTTTTTAGAGTCGTGTTCAATTTTAAAAGCTGTTTGAAACATATTTATTCATATGTTTTCACTTATATTTATCTATATTAACTTGAAAAAATGTCATTGGTTACGTTACTTTATACTTAAAATGCAATTAGTAATTGCATATGGAGTATAATATGCAGAACTACTGAGAAAATATTTGAAATTATATTTTCTGATATTCCTTCTTTAAAAAGTTATGTTACAGGCATGTTTTGTTAGCCAGAAATTAGGGAATTTTAGTAAAACTTCCAAACAGTCTAAGCAACTAGCAACATAAACAAATTATTAGGGATTTAATAACCTTGATTGTTTGCTCCTTTTTTCTTGGGTATTGGCTTCTATTTTTACTAGCCCAAATTGATCATTTTCTTTTTCTTTTCTTTTTTAAATTCTAGTTTTCATGATGTTATTCTCGTCTGTATTTCCCTTCATTAGATTTCTTGGAGCAACGGTGACACAGTTGCTGCAAAAAAGGATGTTGTTGACTCAGAAGATCTTAATCTTGACATAGACTCCATTGGTCTTGGAGTTTTTGACGCATTTTTTGCGAGTTTGTCCATGATAATTGTCAGTGAGGTAGGTGTAGTTGATTCTATCCTCACTTAATACTTTATGTGAACTTTTTCAGAAAAATTGGGTCCATTTCCAAAATGCACTTGGGTGAATTTGTGCAGTATCAGTTCAATCGAGTTATCAACATGGAAGTTTTTGACCTAAATGCTTATTTGTTCAAGTTCAATCATTTTAACTTTTCTGGAATAATTGTTTGTAGATTGGAGATGAGACATTTATAATTGCTGCACTTATGGCTATGCGCCACCCCAAGTCCATTGTTTTATCTGGTGCGCTCGCTGCCCTGATTGTAATGACAGTAAGTTGAATAAATCTTTCATTTTCATGTAGCCCCTAGGATAATAATTTATTTTAAGTTTCCAGCTTATTTTTATAGTATGGTTCTGTATTTGTTTTTTTTGGATTGTTTAGCAACTGCATTCCAATATTCTTACTCTGGTGAATAAGAGTAGAACTATTTCCATGTCCATTAGGTACTCTCAACTGGTTTAGGTAGGATAGTGCCGAATTTGATATCAAGGAAACATACCAACAATGCTGCAACAGGTACATACATAGTGTCTTACTCTTTTTGGAGAATATCTATTTGTAGAGTACTGTATGGTGCTATTCATTCTATTTTGACTATCTTTTGGGAGTATCTTTTCTAATATATATTTCCTGATTAATCGTTACCTTTTGATATCCCTACTGTTGTAACTCCATTCACACAAAGGGTTGATACATTTGATCATTTTCTTCTGTTATTTCACCGCCCCTATTAGTTGTCACTTTTCTCTTCACTACAATTCAAAGAAAAAGAAAAAGAAAAAAAATCTTAAGATTCACCTAGTTTTTGTGGTATCTATATGTATCATTTAATAAGCTAAACTTCTATAGATAGAATGCAGAAGATGGGTTGAATATGGAATCCTGACTTCAAATTTTCTACCTATGCACAAGGCTTGCTACCAAGAGAAAAGCCTTCTAAAAGCATCTCTACCTCAAAGGAAGGAGTTGAATTGAAGAGTAAAGAGTCACTAATATCCCTACCGTCTGTAGCAATAAGAGTTGGTGATTTTATCATCTGAGTGAGACCAAACGATCTGGATTTTTTATGTAGTTTTGGTTCAAACCAAAGGGAATTGACCTTAATAAACATGGTTAAATTTTTGAAAAATACCTTTTTGGTCCCTAGGTTTTGGGTTTAGTTTCCATTTTGGTCTCTAAGTTTTAAAATGTTACACTTTTACCCTAAGTTTTGAGTTTAATTTTTACAACTGACGAACTTAACACGCTTAGTGAATTCAAACCATGGTTAAGATAAAACTTTTTAGCAGTCGTGCATCAATTTAACAACTTAATATAAACCTGGGGTCGGTTTAATCTGTTGTCTTTTTGATCCTGCACTTTATGTACATTCACATATTAAATTTAAATTGATGCATCACTTTAGCAACTACTGCTTGTCATTTTGGGCTGTTGTTGTAATGGTACTTTCTTTCCAGATGATGAGACTACATTTATTATTTTACTTGTTAACTGTGACTCTGTCTAAGTTGCATACTTCTGCTAGAGTTTTTATTTTTGTTTGTTTCTTCTGATATCAATTATAGTGTTGTCAGCCTACGTCTTAATATTGTTTTCTGCAGTTCTGTATGCATTTTTTGGATTGCGGTTACTTTACATTGCTTGGAGATCCAAATCAGATTCAAAATCTTCAACGAAAAAGGAAATGGAAGAAGTATGCTATCCTTCTTATCTTTTTGCAGTTTGATGCTTGTTCACCTTTATTTTGTATGATTCATGTCTGCATTTTCCTTTGTTGTCTGGTATTGATTTTTATTCTTGAAGCTCTTTTGGACGTTTTTTTTATAGAAGATTTGATGATTGATGATCTATTACATGAAGACAATTATAATACAGATGTCTTTGGTAGTTTATCTTATAATACAGATGTCTTTGGTAGTTTATCTTATAATACAGATGTCTTTGGTAGTTTATCTTATAATACAGATGTCTTTGGTAGTTTTTCCTTTTCCCTTGTTTTTAATAGCATTTATTTGAGGCATTTTTCTGTTATTTAATAAATGGAAATACAGGGTGAAAACAGATAAATAGCTAGTTCAATACTGGAGGGCCTTGTTTAGTTTGCCTGATTGCAATGTTTACATGGACTGTTATATTCCTTATATATACGTTTCTATATTTTCAACCTTTTCCCATGTCTAGATTGATTCATACAACGTTCTAAATGTGAGATTACCTGAAAGAATATTTCATGTTTGATAGTGATATTAATTGCTATCTGCTATTCATTGACTTGGATTTATAAACTTTTGTTCTCTACACTATATTTCTCCTTGTGGTGTCATAAAAATATTTAGAACCATTCTGAATATTGTTACTTGTCTTTTGTGCCTTGAGTGAATTTGATTAATATATCTATAATTCATATGTCCCCATCTTGTTATCTCACTTTTAAGAAAGCATGTGGCTGTTTTAGCTACATATGGAATTTAATCTTCAGGATCATGAATTTATATCGTCTATTGATTAGCCTTTCCTCATTTGTTAGTATCGGTTGATGATCTTTGTTCAGTCAATGTGAGAATGGCTTCTTGTGTACTCTTACGCTAAATTGACTTCTAATCATGTGTTCAGGTAGAGGAGAAACTTGAGGCTGGACAATCCAAGACGACCTTCCGCCGCTTCTTTCTGCGGTTTTGTACACCCATATTCTTGGAGGTCCACAAACTACTATAACACTGATTTAACAATAAAATTTTCAGACTGGCTGCGTGTCTAACATTATTATTCTGTCTTTTATCTTTCCTCATTCTTCCATTAGTTTCATATATATAATTCCTAAGCTGATTTTGGTGATTGTTTTGGCTTTGCAGTCATTTATTTTGACATTTCTTGCTGAATGGGGAGATCGGAGTCAGATAGCAACAATTGCAGTAAGTTCTTTCATAGAATCGTCTATTTAG

mRNA sequence

GAAAAAAGAAAACGCTTTTAATTCACCACTTTCTAACCCGTTGGTCAAAACATTTACTCTGAAAAAAATATATTTAAATAAATATAAAAAAGCTTCCATGATTTTGGCTATGGTGGATCTCTAGCTTCGAAGAAGGATCTCCCTTTCTCTTTATCTCTGTATCGCGAATTCAAGTTGTGGTGGTGTAAAATTGCAGCAAAGCAATGCAGATCTGATCTTCCCTTTTCAATTGAGAGATCCCACCCTCTCAATTTCTTCTCCGATTCAGATCCCCGTCTCTCTACAAACAACTAACTCCATCCACTATCTTCTTAATCCCTTTTTCTTCAATGGGTTTGCGTTCAAACCCTACTGCAAACCTCTCTTTCTCTCCTTCTTTTCTCCTCCTTTTGCTTCTTCTTTCTCTCTTTGCCTCCCTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTCGGTCGACGTAGCAAGATTTCTTGGAGCAACGGTGACACAGTTGCTGCAAAAAAGGATGTTGTTGACTCAGAAGATCTTAATCTTGACATAGACTCCATTGGTCTTGGAGTTTTTGACGCATTTTTTGCGAGTTTGTCCATGATAATTGTCAGTGAGATTGGAGATGAGACATTTATAATTGCTGCACTTATGGCTATGCGCCACCCCAAGTCCATTGTTTTATCTGGTGCGCTCGCTGCCCTGATTGTAATGACAGTACTCTCAACTGGTTTAGGTAGGATAGTGCCGAATTTGATATCAAGGAAACATACCAACAATGCTGCAACAGTTCTGTATGCATTTTTTGGATTGCGGTTACTTTACATTGCTTGGAGATCCAAATCAGATTCAAAATCTTCAACGAAAAAGGAAATGGAAGAAGTAGAGGAGAAACTTGAGGCTGGACAATCCAAGACGACCTTCCGCCGCTTCTTTCTGCGGTTTTGTACACCCATATTCTTGGAGTCATTTATTTTGACATTTCTTGCTGAATGGGGAGATCGGAGTCAGATAGCAACAATTGCAGTAAGTTCTTTCATAGAATCGTCTATTTAG

Coding sequence (CDS)

ATGGGTTTGCGTTCAAACCCTACTGCAAACCTCTCTTTCTCTCCTTCTTTTCTCCTCCTTTTGCTTCTTCTTTCTCTCTTTGCCTCCCTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGAGTTGGATGGACCTAAAGATCTCGGTCGACGTAGCAAGATTTCTTGGAGCAACGGTGACACAGTTGCTGCAAAAAAGGATGTTGTTGACTCAGAAGATCTTAATCTTGACATAGACTCCATTGGTCTTGGAGTTTTTGACGCATTTTTTGCGAGTTTGTCCATGATAATTGTCAGTGAGATTGGAGATGAGACATTTATAATTGCTGCACTTATGGCTATGCGCCACCCCAAGTCCATTGTTTTATCTGGTGCGCTCGCTGCCCTGATTGTAATGACAGTACTCTCAACTGGTTTAGGTAGGATAGTGCCGAATTTGATATCAAGGAAACATACCAACAATGCTGCAACAGTTCTGTATGCATTTTTTGGATTGCGGTTACTTTACATTGCTTGGAGATCCAAATCAGATTCAAAATCTTCAACGAAAAAGGAAATGGAAGAAGTAGAGGAGAAACTTGAGGCTGGACAATCCAAGACGACCTTCCGCCGCTTCTTTCTGCGGTTTTGTACACCCATATTCTTGGAGTCATTTATTTTGACATTTCTTGCTGAATGGGGAGATCGGAGTCAGATAGCAACAATTGCAGTAAGTTCTTTCATAGAATCGTCTATTTAG

Protein sequence

MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGDTVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSSFIESSI

Homology

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BLAST of Lsi11G008650 vs. ExPASy Swiss-Prot
Match: Q93Y38 (GDT1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g36290 PE=2 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.6e-71
Identity = 159/245 (64.90%), Postives = 185/245 (75.51%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELD----GPKDLGRRSKISW 60
           MGL SNPT         +L+  +  L +S+    + VE +E        K+LGRR  +  
Sbjct: 1   MGLISNPT-------RLILVATIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGT 60

Query: 61  S--NGDTVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAM 120
                DTV    D + +  LNLD+D+    VFDA F+S SMI+V+EIGDETFIIAALMAM
Sbjct: 61  ERIGVDTVV---DNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAM 120

Query: 121 RHPKSIVLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRS 180
           RHPK+ VLSGAL+AL VMT+LSTGLGRIVPNLISRKHTN+AATVLYAFFGLRLLYIAWRS
Sbjct: 121 RHPKATVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRS 180

Query: 181 KSDSKSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIAT 240
            +DSKS+ KKEMEEVEEKLE+GQ KT FRR F RFCTPIFLESFILTFLAEWGDRSQIAT
Sbjct: 181 -TDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIAT 234

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BLAST of Lsi11G008650 vs. ExPASy Swiss-Prot
Match: A2ZE50 (GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.9e-70
Identity = 156/226 (69.03%), Postives = 178/226 (78.76%), Query Frame = 0


Query: 14  SPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGDTVAAKKDVVDSED 73
           +P  L+LL+LL+  A++ V  AE  +        LGRR     + G     KK+ V   D
Sbjct: 4   NPRLLILLVLLAFSATVAV--AEDGESTGGSKVSLGRR-----AGGFLHGLKKEAVVEGD 63

Query: 74  LNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMT 133
             + +D +G G+FDA FASLSMI+VSEIGDETFIIAALMAMRHPKSIVLSGAL+AL VMT
Sbjct: 64  HGVALDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMT 123

Query: 134 VLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKSSTKKEMEEVEEKL 193
           VLSTGLGRIVPNLISRKHTN+AATVLY FFGLRLLYIAW  KSD K S KKEMEEVEEKL
Sbjct: 124 VLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAW--KSDPKGSQKKEMEEVEEKL 183

Query: 194 EAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           E+GQ K+T RRFF RFCTPIFLE+FILTFLAEWGDRSQIATIA+++
Sbjct: 184 ESGQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALAT 220

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BLAST of Lsi11G008650 vs. ExPASy Swiss-Prot
Match: Q2R4J1 (GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=2 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.9e-70
Identity = 156/226 (69.03%), Postives = 178/226 (78.76%), Query Frame = 0


Query: 14  SPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGDTVAAKKDVVDSED 73
           +P  L+LL+LL+  A++ V  AE  +        LGRR     + G     KK+ V   D
Sbjct: 4   NPRLLILLVLLAFSATVAV--AEDGESTGGSKVSLGRR-----AGGFLHGLKKEAVVEGD 63

Query: 74  LNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMT 133
             + +D +G G+FDA FASLSMI+VSEIGDETFIIAALMAMRHPKSIVLSGAL+AL VMT
Sbjct: 64  HGVALDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMT 123

Query: 134 VLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKSSTKKEMEEVEEKL 193
           VLSTGLGRIVPNLISRKHTN+AATVLY FFGLRLLYIAW  KSD K S KKEMEEVEEKL
Sbjct: 124 VLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAW--KSDPKGSQKKEMEEVEEKL 183

Query: 194 EAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           E+GQ K+T RRFF RFCTPIFLE+FILTFLAEWGDRSQIATIA+++
Sbjct: 184 ESGQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALAT 220

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BLAST of Lsi11G008650 vs. ExPASy Swiss-Prot
Match: Q6ZIB9 (GDT1-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0528500 PE=2 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.2e-69
Identity = 155/225 (68.89%), Postives = 180/225 (80.00%), Query Frame = 0


Query: 20  LLLLLSLFASLQVYSAEVEKDELDGPKD-----LGRRSKISWSNGDTVAAKKDVVDSEDL 79
           LLLLL L A+    +A  ++++  G  D     L RR+K+        AA+     S+  
Sbjct: 10  LLLLLLLVAAAAAAAAAGDQEDPRGGGDNGTARLDRRTKMFLH-----AARA----SDGG 69

Query: 80  NLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMTV 139
              ++  GLG+FDAFFASLSMI+VSEIGDETFIIAALMAMRHPKS VLSGAL+AL+VMT+
Sbjct: 70  ATGMEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTI 129

Query: 140 LSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKSSTKKEMEEVEEKLE 199
           LSTGLGRIVPNLISRKHTN+AATVLYAFFGLRLLYIAWR  SDSK+S KKE+EEVEEKLE
Sbjct: 130 LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWR--SDSKASQKKEIEEVEEKLE 189

Query: 200 AGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           AGQ K+TFRR F RFCTPIFLESF+LTFLAEWGDRSQIATIA+++
Sbjct: 190 AGQGKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALAT 223

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BLAST of Lsi11G008650 vs. ExPASy Swiss-Prot
Match: A2YXC7 (GDT1-like protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29993 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.2e-69
Identity = 155/224 (69.20%), Postives = 179/224 (79.91%), Query Frame = 0


Query: 20  LLLLLSLFASLQVYSAEVEKDEL----DGPKDLGRRSKISWSNGDTVAAKKDVVDSEDLN 79
           LLLLL L A+    +A  ++D      +G   L RR+K+        AA+     S+   
Sbjct: 10  LLLLLLLVAAAAAAAAGDQEDPRGGGDNGTARLDRRTKMFLH-----AARA----SDGGA 69

Query: 80  LDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMTVL 139
             ++  GLG+FDAFFASLSMI+VSEIGDETFIIAALMAMRHPKS VLSGAL+AL+VMT+L
Sbjct: 70  TGMEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTIL 129

Query: 140 STGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKSSTKKEMEEVEEKLEA 199
           STGLGRIVPNLISRKHTN+AATVLYAFFGLRLLYIAWR  SDSK+S KKE+EEVEEKLEA
Sbjct: 130 STGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWR--SDSKASQKKEIEEVEEKLEA 189

Query: 200 GQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           GQ K+TFRR F RFCTPIFLESF+LTFLAEWGDRSQIATIA+++
Sbjct: 190 GQGKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALAT 222

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BLAST of Lsi11G008650 vs. ExPASy TrEMBL
Match: A0A6J1KA70 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111492492 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.2e-115
Identity = 223/239 (93.31%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT NLSFSPS +LLLLL+SLFAS+QVYSAEVEK+ELDGPKDLGRRSKISW+N D
Sbjct: 1   MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVYSAEVEKEELDGPKDLGRRSKISWNNVD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           T+AAKKDVVDSEDLNLD+DS+GLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TIAAKKDVVDSEDLNLDLDSVGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGAL+ALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSK+DSKS
Sbjct: 121 VLSGALSALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKADSKS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 239

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BLAST of Lsi11G008650 vs. ExPASy TrEMBL
Match: A0A5A7U3P6 (GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00130 PE=3 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.3e-113
Identity = 226/239 (94.56%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT  LSFSPSFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSKISWSN D
Sbjct: 1   MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKISWSNSD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           TVAAKKD VDSEDLNLD+DSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TVAAKKDGVDSEDLNLDMDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKS+ KS
Sbjct: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSE-KS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 238

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BLAST of Lsi11G008650 vs. ExPASy TrEMBL
Match: A0A1S3B4E3 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103485889 PE=3 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.3e-113
Identity = 226/239 (94.56%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT  LSFSPSFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSKISWSN D
Sbjct: 1   MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKISWSNSD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           TVAAKKD VDSEDLNLD+DSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TVAAKKDGVDSEDLNLDMDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKS+ KS
Sbjct: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSE-KS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 238

[Close]

BLAST of Lsi11G008650 vs. ExPASy TrEMBL
Match: A0A6J1EPP7 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita moschata OX=3662 GN=LOC111436248 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.7e-113
Identity = 221/239 (92.47%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT NLSFSPS +LLLLL+SLFAS+QV+SAEVEK+ELD PKDLGRRSKISW+N D
Sbjct: 1   MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVFSAEVEKEELDVPKDLGRRSKISWNNVD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           T+AAKKDVVDSEDLNLD+DS+GLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TIAAKKDVVDSEDLNLDLDSVGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGAL+ALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSK+DSKS
Sbjct: 121 VLSGALSALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKADSKS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 239

[Close]

BLAST of Lsi11G008650 vs. ExPASy TrEMBL
Match: A0A0A0LMQ4 (GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.5e-111
Identity = 222/239 (92.89%), Postives = 230/239 (96.23%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPTA LSFS SFLL LL LSLFAS QVYSAEVEKD+LDGPKDLGRRSK+SWSN D
Sbjct: 1   MGLRSNPTATLSFSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMSWSNSD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           TVA KKD VDSEDLNLD+DSIGLGVFDAFFASLSMI+VSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TVATKKDGVDSEDLNLDMDSIGLGVFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKS+ KS
Sbjct: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSE-KS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 238

[Close]

BLAST of Lsi11G008650 vs. NCBI nr
Match: XP_022997610.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 223/239 (93.31%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT NLSFSPS +LLLLL+SLFAS+QVYSAEVEK+ELDGPKDLGRRSKISW+N D
Sbjct: 1   MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVYSAEVEKEELDGPKDLGRRSKISWNNVD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           T+AAKKDVVDSEDLNLD+DS+GLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TIAAKKDVVDSEDLNLDLDSVGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGAL+ALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSK+DSKS
Sbjct: 121 VLSGALSALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKADSKS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 239

[Close]

BLAST of Lsi11G008650 vs. NCBI nr
Match: XP_038889550.1 (GDT1-like protein 4 [Benincasa hispida])

HSP 1 Score: 421.4 bits (1082), Expect = 5.4e-114
Identity = 228/239 (95.40%), Postives = 234/239 (97.91%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPTANLSFS SFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSN D
Sbjct: 1   MGLRSNPTANLSFSSSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNSD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           T+AAKKD VD EDLNLD+DSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TIAAKKDGVDPEDLNLDMDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKS+ KS
Sbjct: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSE-KS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 238

[Close]

BLAST of Lsi11G008650 vs. NCBI nr
Match: XP_023545881.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 420.6 bits (1080), Expect = 9.1e-114
Identity = 221/239 (92.47%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT NLSFSPS +LLLLL+SLFAS+QV+SAEVEK+ELDGPKDLGRRSKISW+N D
Sbjct: 1   MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVFSAEVEKEELDGPKDLGRRSKISWNNID 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           T+AA+KDVVDSEDLNLD+DS+GLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TIAARKDVVDSEDLNLDLDSVGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGAL+ALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSK+DSKS
Sbjct: 121 VLSGALSALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKADSKS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 239

[Close]

BLAST of Lsi11G008650 vs. NCBI nr
Match: XP_008441858.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo])

HSP 1 Score: 419.1 bits (1076), Expect = 2.7e-113
Identity = 226/239 (94.56%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT  LSFSPSFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSKISWSN D
Sbjct: 1   MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKISWSNSD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           TVAAKKD VDSEDLNLD+DSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TVAAKKDGVDSEDLNLDMDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKS+ KS
Sbjct: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSE-KS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 238

[Close]

BLAST of Lsi11G008650 vs. NCBI nr
Match: KAA0049878.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK07616.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 419.1 bits (1076), Expect = 2.7e-113
Identity = 226/239 (94.56%), Postives = 232/239 (97.07%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELDGPKDLGRRSKISWSNGD 60
           MGLRSNPT  LSFSPSFLL LLLLSLFAS+QVYSAE EKDELDGPKDLGRRSKISWSN D
Sbjct: 1   MGLRSNPTTTLSFSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKISWSNSD 60

Query: 61  TVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120
           TVAAKKD VDSEDLNLD+DSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI
Sbjct: 61  TVAAKKDGVDSEDLNLDMDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSI 120

Query: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKS 180
           VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKS+ KS
Sbjct: 121 VLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKSE-KS 180

Query: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIA+++
Sbjct: 181 STKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALAT 238

[Close]

BLAST of Lsi11G008650 vs. TAIR 10
Match: AT5G36290.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 268.5 bits (685), Expect = 5.4e-72
Identity = 159/245 (64.90%), Postives = 185/245 (75.51%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELD----GPKDLGRRSKISW 60
           MGL SNPT         +L+  +  L +S+    + VE +E        K+LGRR  +  
Sbjct: 1   MGLISNPT-------RLILVATIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGT 60

Query: 61  S--NGDTVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAM 120
                DTV    D + +  LNLD+D+    VFDA F+S SMI+V+EIGDETFIIAALMAM
Sbjct: 61  ERIGVDTVV---DNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAM 120

Query: 121 RHPKSIVLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRS 180
           RHPK+ VLSGAL+AL VMT+LSTGLGRIVPNLISRKHTN+AATVLYAFFGLRLLYIAWRS
Sbjct: 121 RHPKATVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRS 180

Query: 181 KSDSKSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIAT 240
            +DSKS+ KKEMEEVEEKLE+GQ KT FRR F RFCTPIFLESFILTFLAEWGDRSQIAT
Sbjct: 181 -TDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIAT 234

[Close]

BLAST of Lsi11G008650 vs. TAIR 10
Match: AT5G36290.2 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 268.5 bits (685), Expect = 5.4e-72
Identity = 159/245 (64.90%), Postives = 185/245 (75.51%), Query Frame = 0


Query: 1   MGLRSNPTANLSFSPSFLLLLLLLSLFASLQVYSAEVEKDELD----GPKDLGRRSKISW 60
           MGL SNPT         +L+  +  L +S+    + VE +E        K+LGRR  +  
Sbjct: 1   MGLISNPT-------RLILVATIFFLVSSISGQDSVVENNERQESEGSGKELGRRGMVGT 60

Query: 61  S--NGDTVAAKKDVVDSEDLNLDIDSIGLGVFDAFFASLSMIIVSEIGDETFIIAALMAM 120
                DTV    D + +  LNLD+D+    VFDA F+S SMI+V+EIGDETFIIAALMAM
Sbjct: 61  ERIGVDTVV---DNIGALGLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAM 120

Query: 121 RHPKSIVLSGALAALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRS 180
           RHPK+ VLSGAL+AL VMT+LSTGLGRIVPNLISRKHTN+AATVLYAFFGLRLLYIAWRS
Sbjct: 121 RHPKATVLSGALSALFVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRS 180

Query: 181 KSDSKSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIAT 240
            +DSKS+ KKEMEEVEEKLE+GQ KT FRR F RFCTPIFLESFILTFLAEWGDRSQIAT
Sbjct: 181 -TDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIAT 234

[Close]

BLAST of Lsi11G008650 vs. TAIR 10
Match: AT1G25520.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 118.2 bits (295), Expect = 9.0e-27
Identity = 72/171 (42.11%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 85  VFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMTVLSTGLGRIVP 144
           V   F  SL+M  VSEIGD+TF  AA++AMR+P+ +VL+G L+ALIVMT+LS  LG   P
Sbjct: 4   VLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAP 63

Query: 145 NLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKSSTKKEMEEVEEKLEA--------- 204
           NLISRK T++  T+L+  FGL  L+  ++          +E+ EVE +L+A         
Sbjct: 64  NLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGG----SEELAEVEAELDADLKANGKSP 123

Query: 205 -------GQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
                   ++K   R F  +F +PIFL++F + F  EWGD+SQ+ATI +++
Sbjct: 124 KDSSKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAA 170

[Close]

BLAST of Lsi11G008650 vs. TAIR 10
Match: AT1G68650.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 115.5 bits (288), Expect = 5.9e-26
Identity = 71/170 (41.76%), Postives = 103/170 (60.59%), Query Frame = 0


Query: 85  VFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMTVLSTGLGRIVP 144
           +   F  SL+M  +SEIGD+TF  AA++AMR+P+ +VL+G L+ALIVMT+LS  LG   P
Sbjct: 4   LLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAP 63

Query: 145 NLISRKHTNNAATVLYAFFGLRLLYIAWRSKSDSKSSTKKEMEEVEEKLEAGQSKTT--- 204
           NLISRK T++  T L+  FGL  L+  ++    S     +E+ EVE +L++   KT    
Sbjct: 64  NLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGS-----EELAEVEAELDSDLKKTNDQS 123

Query: 205 ------------FRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
                        R F   F +PIFL++F + F  EWGD+SQ+ATI +++
Sbjct: 124 KNSKIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAA 168

[Close]

BLAST of Lsi11G008650 vs. TAIR 10
Match: AT4G13590.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-17
Identity = 62/159 (38.99%), Postives = 94/159 (59.12%), Query Frame = 0


Query: 89  FFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALAALIVMTVLSTGLGRIVPNLIS 148
           F A+ S+I VSEIGD+TF IAAL+AM++ K++VL G++ AL +MT+LS  +G+I  ++ +
Sbjct: 146 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIGKIFQSVPA 205

Query: 149 RKHT-----NNAATVLYAFFGLRLLYIAW---RSKSDSKSSTKKEMEEVEEKLEAGQSKT 208
           +  T       AA  L  FFGL+ +  AW     ++ +   T  E+ E  E  E  + K 
Sbjct: 206 QFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSEAEELVKEKA 265

Query: 209 TFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIAVSS 240
           + +   L     I  +SF L F AEWGDRS +AT+A+ +
Sbjct: 266 SKK---LTNPLEILWKSFSLVFFAEWGDRSMLATVALGA 301

The following BLAST results are available for this feature:

BLAST of Lsi11G008650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93Y38	7.6e-71	64.90	GDT1-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g36290 PE=2 SV=1	[more]
A2ZE50	2.9e-70	69.03	GDT1-like protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_36063 PE=3 SV=...	[more]
Q2R4J1	2.9e-70	69.03	GDT1-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0472500 PE=...	[more]
Q6ZIB9	3.2e-69	68.89	GDT1-like protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0528500 PE=...	[more]
A2YXC7	4.2e-69	69.20	GDT1-like protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_29993 PE=3 SV=...	[more]

BLAST of Lsi11G008650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA70	5.2e-115	93.31	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi...	[more]
A0A5A7U3P6	1.3e-113	94.56	GDT1 family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G...	[more]
A0A1S3B4E3	1.3e-113	94.56	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23...	[more]
A0A6J1EPP7	1.7e-113	92.47	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita mosc...	[more]
A0A0A0LMQ4	3.5e-111	92.89	GDT1 family protein OS=Cucumis sativus OX=3659 GN=Csa_2G074220 PE=3 SV=1	[more]

BLAST of Lsi11G008650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997610.1	1.1e-114	93.31	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima...	[more]
XP_038889550.1	5.4e-114	95.40	GDT1-like protein 4 [Benincasa hispida]	[more]
XP_023545881.1	9.1e-114	92.47	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita pepo s...	[more]
XP_008441858.1	2.7e-113	94.56	PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro...	[more]
KAA0049878.1	2.7e-113	94.56	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ...	[more]

BLAST of Lsi11G008650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36290.1	5.4e-72	64.90	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.2	5.4e-72	64.90	Uncharacterized protein family (UPF0016)	[more]
AT1G25520.1	9.0e-27	42.11	Uncharacterized protein family (UPF0016)	[more]
AT1G68650.1	5.9e-26	41.76	Uncharacterized protein family (UPF0016)	[more]
AT4G13590.1	1.0e-17	38.99	Uncharacterized protein family (UPF0016)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 179..199
None	No IPR available	PANTHER	PTHR12608:SF9	GDT1-LIKE PROTEIN 3	coord: 18..238
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 216..238 e-value: 3.9E-5 score: 23.9 coord: 91..164 e-value: 2.8E-18 score: 66.0
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 18..238

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G008650.1	Lsi11G008650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
biological_process	GO:0051028	mRNA transport
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity
molecular_function	GO:0008270	zinc ion binding