Lsi11G007760 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G007760
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S acidic ribosomal protein P3
Location	chr11: 8908489 .. 8909906 (+)
RNA-Seq Expression	Lsi11G007760
Synteny	Lsi11G007760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAACAAAGGCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCATCTGTCAACATAAAAACCACATACAATCCGCAGAAGAGAGCCGTCCACTCCCAACTCTCTCCATTTTCTTCTTCGCAATTCTCTTCAAGCAAAATCCCGATTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTACTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTATTCAGCGTTTTCTCTGTTATTCCGGTTTTTTATTCCTCTCGATCTGATGCGTTTACTCTTCAATCTTTTATTATAAACTCGCGTACTTAGTGTTTGTGTTATTGCTTAGTCTGGTTAGTAATGTTATTGTATGTATGGATACGTAACTTTTCCTTTGCTGTGCAATGAGGGTCGACTGTTTTTCTAGTTTTTCCATCTTTAGCGTATGTTTGAACTTTTGGCTTTTGTTTGATATTTAGTTTGGTGTTTTAACAATTACGATTATGGTTTCTGGGTACACGATCGATTAAGCAGCTATTGATTACGGGAATTCGCCAATTATATGGTCTTATAATGAATTAAAGCATTGTTGGTGATCATTCTTGTAGTATGTTCATTGTTGAGTTCCTTGATTAGTTTATAACCTATCTACATTAACTCATTGAATTTAACCTTCTTTGGATAAGAAGATCTAACATATTTCAAGAAGAATGTGTCTTCCGGGTTTGCAGAGATATTTGGAAGAACTTGGTTGAGGGTCTTTTTCGTCTTCACTCTATTTATGATTTATGATATCTCCTCAACTGGCTTCCTCCTTGCTTGCCTATTGTTATCTGTTGTGTGTGCCTAGTTTAAACATTAGTTTTTCAGGTGATCGTTGGCGGTGGCGGTGGAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAGTTGGTATAATTACTCGTTATTGTTATTAACCTCAGAGGTTTTAGCACTCAGGTTTTCTTTTCAGGAAATTATGTCTATGCATTTACTTGAATTTGCAAGTTCAGTTGCTATTCTTGTTAAGGACGTAAAATTTTGTTAATGACCTTTGTCAAATGGTTGAGAATTAGATGTGTTATTTTGGAATTGTGTTTGGGAAGCTCGATTATCCGTCATAGATACTATTTGTTGTTGAAGAGATTCTAAGCTAGGGGTGGG

mRNA sequence

ATTTAACAAAGGCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCATCTGTCAACATAAAAACCACATACAATCCGCAGAAGAGAGCCGTCCACTCCCAACTCTCTCCATTTTCTTCTTCGCAATTCTCTTCAAGCAAAATCCCGATTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTACTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTGATCGTTGGCGGTGGCGGTGGAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAGTTGGTATAATTACTCGTTATTGTTATTAACCTCAGAGGTTTTAGCACTCAGGTTTTCTTTTCAGGAAATTATGTCTATGCATTTACTTGAATTTGCAAGTTCAGTTGCTATTCTTGTTAAGGACGTAAAATTTTGTTAATGACCTTTGTCAAATGGTTGAGAATTAGATGTGTTATTTTGGAATTGTGTTTGGGAAGCTCGATTATCCGTCATAGATACTATTTGTTGTTGAAGAGATTCTAAGCTAGGGGTGGG

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTACTCCGGTGACCTTGAAGGCTCTGCCGACTCCACCTACGAGCTCCAGAGGAAGCTCGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGTGTTCAGTCATCTTTCTCTCTCATTACTCCCACCTCCGCCGTTTTCCAGGTGATCGTTGGCGGTGGCGGTGGAGGCGGTTTCATTGGAGGTGGTGGAGCTGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTCTTTGATTAG

Protein sequence

MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITPTSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSLFD

Homology

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BLAST of Lsi11G007760 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-34
Identity = 81/121 (66.94%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVF V++GGGGGGGF  GGGAAA    GG+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 119

Query: 121 F 122
           F
Sbjct: 121 F 119

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BLAST of Lsi11G007760 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.5e-31
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGF   GGAA++    G+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGF-SAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

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BLAST of Lsi11G007760 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGV+TFVCRSSG +WTA Q  G+LE SA + YELQR+LV +A + DS+ GVQSSFS+++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAP--AEKKEEVKEESDDDDLGL 120
           +SAVFQVI+G  GGG  IGGG AA AA  G    AAAEAP   EKKEE KEES +DDLG 
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGG----AAAEAPKAEEKKEEEKEES-EDDLGF 119

Query: 121 SLFD 123
           SLFD
Sbjct: 121 SLFD 119

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BLAST of Lsi11G007760 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-29
Identity = 75/123 (60.98%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGV+TFVCR++GG+WTA Q+SG++E SA + YELQR+LV +A + DS  GVQSSFS++TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVIVGG-GGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLS 120
           +SAVFQVIVG  GGG   + GGG   AA +GG   AAAEAP E+K+E ++E  DDD+G S
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

Query: 121 LFD 123
           LFD
Sbjct: 121 LFD 120

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BLAST of Lsi11G007760 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Lsi11G007760 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Lsi11G007760 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIVGGG GGGF  GGG AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGG-AAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Lsi11G007760 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.0e-48
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Lsi11G007760 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 8.0e-48
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Lsi11G007760 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 218.0 bits (554), Expect = 4.5e-53
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 122

[Close]

BLAST of Lsi11G007760 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 3.2e-51
Identity = 118/122 (96.72%), Postives = 119/122 (97.54%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGFIGGG  AAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Lsi11G007760 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.5e-48
Identity = 114/122 (93.44%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFS ITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIVGGG GGGF  GGG AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGG-AAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Lsi11G007760 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.5 bits (506), Expect = 1.6e-47
Identity = 109/122 (89.34%), Postives = 114/122 (93.44%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS +TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GG  GGGFIGGGG AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Lsi11G007760 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 107/122 (87.70%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVCRSSG +WTA QYSGDLEGSA STYELQRKLVQ+AL+VDSSGGVQSSFS I+P
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVI+GGGGGGGFI GGGAAAAAP+GG AP AAEAPAEKKEE KEES DDDLGLSL
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAP-AAEAPAEKKEEEKEES-DDDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Lsi11G007760 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-35
Identity = 81/121 (66.94%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVF V++GGGGGGGF  GGGAAA    GG+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 119

Query: 121 F 122
           F
Sbjct: 121 F 119

[Close]

BLAST of Lsi11G007760 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-34
Identity = 81/121 (66.94%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVF V++GGGGGGGF  GGGAAA    GG+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of Lsi11G007760 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.4 bits (337), Expect = 6.1e-32
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFSL++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIVGGGGGGGFIGGGGAAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           TSAVFQVIVGGGGGGGF   GGAA++    G+A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGF-SAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of Lsi11G007760 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 127.1 bits (318), Expect = 9.7e-30
Identity = 63/82 (76.83%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSLITP 60
          MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFSL++P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQVIVGGGGGGGFIGGGG 83
          TSAVF V++GGGGGGGF  GGG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGG 82

The following BLAST results are available for this feature:

BLAST of Lsi11G007760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	2.8e-34	66.94	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
Q9SVZ6	8.5e-31	65.29	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
P56724	1.2e-29	65.32	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
O24413	2.1e-29	60.98	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]

BLAST of Lsi11G007760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNN6	1.6e-51	96.72	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	1.6e-51	96.72	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A0A0LJB2	1.2e-48	93.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A6J1KB28	8.0e-48	89.34	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	8.0e-48	89.34	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Lsi11G007760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889531.1	4.5e-53	97.54	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_008451467.1	3.2e-51	96.72	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_004148320.1	2.5e-48	93.44	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_022929782.1	1.6e-47	89.34	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]
XP_022153281.1	1.9e-43	87.70	60S acidic ribosomal protein P3-2 [Momordica charantia]	[more]

BLAST of Lsi11G007760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	2.0e-35	66.94	60S acidic ribosomal protein family	[more]
AT5G57290.3	3.8e-34	66.94	60S acidic ribosomal protein family	[more]
AT4G25890.1	6.1e-32	65.29	60S acidic ribosomal protein family	[more]
AT5G57290.2	9.7e-30	76.83	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 76..121 e-value: 8.7E-11 score: 42.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..122
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G007760.1	Lsi11G007760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome