Lsi11G007720 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G007720
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	La-related protein 6 isoform 1
Location	chr11: 8838932 .. 8842853 (+)
RNA-Seq Expression	Lsi11G007720
Synteny	Lsi11G007720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGATTTATGATTAGTACAGAAAAATTGAAACCTCCGATGGGCAATTGAAATCGTTCCACGTGGAAAGCTTAGAGTCATGAAAATTTAGAAACAACAAAATCTTCTCCTTCCTTCTTCTTCCCCCATTCTCAAATTCCAAAAACCCCCCCAAAAAAAAAAAACCAAAAATCTCAAACCCTTCCAGACCGTTCCATTTCCTCCATTGAAGCAGCCTCCTCCATTTCTCCTCCACCATGTCATTAGCTTCATCGCAACTCAGCTTTCTCGCCACCGCCTTCTCCTTCTCCGTCTCCATCCGCAGCCCTCGGCGGACCGACAACCTTCTCCATTCTTCCAATGCCGTCGTCTCTTGCAAACTCCCTCCCGCTGCCGATGATCCCAAGTAAGTTCGATCGGCCGATTTCTTCGCCATTTCATTTCGGTTTTGAGTCAGTTTAGGTTTCTGATTGATTGAATCGATTGCTGATTTGTGATGTGTATTAGTGGATTATTAAAGAGGGGAAATGAAAATCGACTCGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGAGTTTTAACATTGGGATCGGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGCCAGGCTTTCCGTTCAGCGGCTCCTCGGCCTTCGTCGCCCAGAATCAACAATAATTCCAGGTAATATTTGGATTTGAATTTTCTTTTAGTTGGATTGAAGATTGGCTTCAACTTGGTTTGATTTATTTAATCAGTGAAAAATTAACTATGGAGATTAATATGGGTTTAAATACTATTTTGGCATGGAATTGCTCACTTTTAATCACTCTATTTTCAATAAATCTTAAATCTAGTTTCTCTAAGTTAAATTTTTTTAATCAAAATTGGTTAATGATAATAATCTTCATGCTACAAAATACAGTACGTGAATATGTTTTAAATATTTATATTGAAAATGTTAATGGATAAATAATATTTTCTTAAAACGCTATATTAAATGGCTGATTGACCCAAAAACTTAATCTAATAGATGGAGATATATTTAATATTATATCATCTAACAATTTTTTAGAAAAAAACGAACAATAAACTAAAACATAGACTAAATTTAAGATTTATTCAAATATAGAAACTAAAATTGGACATTTTAAAGTATATGGACTAAAATTGAACAAGTTTCAAAGTATTATAAACTTAAATATATTAAAAAAGACCTAACAATATTTTTTTCCTAGGTTGGACTTTAGTGTTTGTGTATGAACTTAGAGTCTGTTTGAATTGACTAGAGAAAAAGTAATTTTTTAAAAAAAAAAATTAAGCTTTTTTGATAAAAAAAATTGTTTAATATACACTTTAAAATTGTTTTAAAAACTATTTTGAGTGGTTGTTAAACACAAAAATTAAACCAAATACATCGTTAGTTTTTGACAAATTTCAAGTATAAGGATATTGGAGGTAGTTTATTTAGATAATTTAATTTCAATTTGGATCCTATAATTTTTTTAATCTTTAATTTAAGGGAACTTTTAAAAATAGAAAAATAAGAGAAACTATTTACACAAAATAACAAAATTTTTAAATAGTTGTGATAGACTCGATAGATGTTGATAGATGTCTATCAATGTCTATTAGAGATAGAAATGATAGAAGTCTATCACTGATAGATGCGAATAGAAGTCTATCAATGTCTATCAGTAATTTTTTTGCTATTTTCTATAAATAATTTGATATTTTTTCTATATATGAAAATTTCCCTTTAATTTAATACCTATGATCTGGACTTAGATTTTCATTTGGTCATAGCATTAAAATGGTGCCTATTATTATCATATTAAATAATTAACTTGTTTTTTTTATTTATGCCATCATGAGTAAGTATTTTCTATTTAACTTGTTATATTATTAGGTCATAAAGCTGAGTGAAAAATAAGAGAAACGAGGTCGGTAGAAAATAATTTAAGAATGATGAATAACCATACCAAACTATAGAAAACAACTTAACTTAGTAAATTATACAAAATTCAAGGATTAACAAAAAAAAAAAAAATTATAAAAGTTGAGGGACTAAAATAAAATATAGAAAGATCTAGAAATCAAAATAGAATTTAAATATTTCTCAAACAATTGAAATATTAGAGAGACTCACTTTTTTGGACTTCCCCTAAAGGCCAACCGACAACAATGATTTTAAATTATTGAGGCCTCGTGTCACGGGGCTAAACCCTTGTGACATTTCGTTGGATAACAATTTTGTTTTTAGTTTTTTATAATTATATTTGTTATATATATATATTTTTCTTTATTATGTTTTTCATCTTTCTTTGAAAATGATTTGAATTCTAAGTCAAATTTCGTAGATAAAAATATGATTTTAAAAACTACAGCCTTATTTGATAACCATTTAGATTTTTGTTCTTTGTATTTGAAAATTGTTATTGTTTTCTCACCATTTCTTTACAATGGTTTCATTTTTTTTTTTAACATTTGAATTCTTAACCAAATTATAAAACAAAAACAATTTTTTCAATCTTCTAAACTTAGCTTGAATTTGAAAACAACAACAAAACAAAGAAACTAGTAGGTAGAAATAGTATTTATAAACTTAATTTTAAAAAACCACATGGTTATTAAACAGGGTCAACTTTTTTTAATTCTCAACCTTGACTTGGATTTCCTAAACATTTTTAAGAACTAGATTACAAAACAGAAGTATCGTCTATAAACTTAATTTTCAAGAACCAAAAATCAAGGTCCCGTTTGGTAACCATTTGGGTTTTGGTTTTTGGTTTTTTTAAAATTAAACCTCTAAACACCCCTTTCATCTCTAAATTTATTGATTTGTTGTCTACTTTCTACCAATGTTTTCAAAAACCAAACTAATTTTCGAAAATTAGAAAAAAAAGTAGTTTTTGTTTTTTGGAATTTAGTTAAGAATTCGACTTTTCTTACTTAAGAAAGATGAAAACCATTGTAAGAAATTAAAAGGAAAGAGGCTTAATTTTTCAGAAACCGAAAATCAAAAACCAAATGATTACCAAAGGGGTCCAAATTGTTGTGAAACCAGGCTAATTATTTTACCACATACTTGAACTCATTTTAGATGATATTTACAAACATTTGAGGCACCTCTCACAGTTTTCAAATGCAAAGGAATAGATTCTATAATACTTCAGGTTAAGATTAGAATTTAAACGTTTTTAAAAAGTAGTTTTTGATTTTGGAATTAAGCTAAGAATTCAACTCTCTTACTTAAGAAAGATGAAAACCATGATAAGAAATTGAGAGAAAATGACTTAATTTTCAAAACTCGAAAATCAAATAGTTACCAAACGGCCCAAAAATTAGTATGAAACAGGGCCTAAGTTTTCTACCACATACTTGAACTCATTTTAGAAGATATTTACAAACATTTCAAACCCTAACCCCAACAAGAAGGTCCATTTTTCACAAATTTCAAATGCAAAGGACTAGATTATGATATAGCTATGTTGATTTTGCAGGACAAATATCTACATAAATCCAAGAGTAGCACCTCCTTTAGTAGGTGGCTATGGGTTTGGGTATGGTGTACCATACTATGGTGGATGGGGATGGTCACCATTTTCGTTCTTTGCACCTTCCCCAACTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTTTTCTCTTCATTTTGCTTGGTACTGTTGCAGCTTTTGTAAGGAAATTCTTTGGAAGAAGGGAAGAAGATGATGATGATTATTAATAATAGCACCCAAATCCTTGGAATGGGATGTTGGATTCATACGTTGTATTCACACTTTTGAACCTAGCTTTTTAGTGGGAGAGGTTTTCTTCAGGGTCAAACTTGTCACACAATGTATTTGTATAAGGTGAGATACTATGTAATTACAAAGCTTAATGTATAAAATGTATAGTTGTTTGTGT

mRNA sequence

ATTGATTTATGATTAGTACAGAAAAATTGAAACCTCCGATGGGCAATTGAAATCGTTCCACGTGGAAAGCTTAGAGTCATGAAAATTTAGAAACAACAAAATCTTCTCCTTCCTTCTTCTTCCCCCATTCTCAAATTCCAAAAACCCCCCCAAAAAAAAAAAACCAAAAATCTCAAACCCTTCCAGACCGTTCCATTTCCTCCATTGAAGCAGCCTCCTCCATTTCTCCTCCACCATGTCATTAGCTTCATCGCAACTCAGCTTTCTCGCCACCGCCTTCTCCTTCTCCGTCTCCATCCGCAGCCCTCGGCGGACCGACAACCTTCTCCATTCTTCCAATGCCGTCGTCTCTTGCAAACTCCCTCCCGCTGCCGATGATCCCAATGGATTATTAAAGAGGGGAAATGAAAATCGACTCGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGAGTTTTAACATTGGGATCGGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGCCAGGCTTTCCGTTCAGCGGCTCCTCGGCCTTCGTCGCCCAGAATCAACAATAATTCCAGGACAAATATCTACATAAATCCAAGAGTAGCACCTCCTTTAGTAGGTGGCTATGGGTTTGGGTATGGTGTACCATACTATGGTGGATGGGGATGGTCACCATTTTCGTTCTTTGCACCTTCCCCAACTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTTTTCTCTTCATTTTGCTTGGTACTGTTGCAGCTTTTGTAAGGAAATTCTTTGGAAGAAGGGAAGAAGATGATGATGATTATTAATAATAGCACCCAAATCCTTGGAATGGGATGTTGGATTCATACGTTGTATTCACACTTTTGAACCTAGCTTTTTAGTGGGAGAGGTTTTCTTCAGGGTCAAACTTGTCACACAATGTATTTGTATAAGGTGAGATACTATGTAATTACAAAGCTTAATGTATAAAATGTATAGTTGTTTGTGT

Coding sequence (CDS)

ATGTCATTAGCTTCATCGCAACTCAGCTTTCTCGCCACCGCCTTCTCCTTCTCCGTCTCCATCCGCAGCCCTCGGCGGACCGACAACCTTCTCCATTCTTCCAATGCCGTCGTCTCTTGCAAACTCCCTCCCGCTGCCGATGATCCCAATGGATTATTAAAGAGGGGAAATGAAAATCGACTCGCGAAGCTTGCGATTGTTACTCTGGCGGCTGGAGTTTTAACATTGGGATCGGTTCATGATGCTTCCGCCGCCAAGACTGGCGGCCGAGTCGGCGGCCAGGCTTTCCGTTCAGCGGCTCCTCGGCCTTCGTCGCCCAGAATCAACAATAATTCCAGGACAAATATCTACATAAATCCAAGAGTAGCACCTCCTTTAGTAGGTGGCTATGGGTTTGGGTATGGTGTACCATACTATGGTGGATGGGGATGGTCACCATTTTCGTTCTTTGCACCTTCCCCAACTGTTGCTGTTGGCATTGGAGGAGGTTTTGATGTTCTTTTTCTCTTCATTTTGCTTGGTACTGTTGCAGCTTTTGTAAGGAAATTCTTTGGAAGAAGGGAAGAAGATGATGATGATTATTAA

Protein sequence

MSLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAFVRKFFGRREEDDDDY

Homology

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BLAST of Lsi11G007720 vs. ExPASy TrEMBL
Match: A0A5A7U097 (La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1484G00020 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.7e-82
Identity = 167/196 (85.20%), Postives = 175/196 (89.29%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDN--LLHSSNAVVSCKLPPAADDPNGLLKRGNE 60
           MSL SSQLSFL+TAFSFS    SP R  N  LL+SS+AVVSCKLPPA+DDP     +GNE
Sbjct: 1   MSLPSSQLSFLSTAFSFSF---SPPRAHNLRLLYSSSAVVSCKLPPASDDP-----KGNE 60

Query: 61  NRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI 120
           NR+AKLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI
Sbjct: 61  NRVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI 120

Query: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAA 180
           NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGG DVLF FILLG+VAA
Sbjct: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAA 180

Query: 181 FVRKFFGRREEDDDDY 195
           FVRK  GRRE DDDDY
Sbjct: 181 FVRKILGRREADDDDY 188

[Close]

BLAST of Lsi11G007720 vs. ExPASy TrEMBL
Match: A0A1S3BRQ8 (uncharacterized protein LOC103492785 OS=Cucumis melo OX=3656 GN=LOC103492785 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.7e-82
Identity = 167/196 (85.20%), Postives = 175/196 (89.29%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDN--LLHSSNAVVSCKLPPAADDPNGLLKRGNE 60
           MSL SSQLSFL+TAFSFS    SP R  N  LL+SS+AVVSCKLPPA+DDP     +GNE
Sbjct: 1   MSLPSSQLSFLSTAFSFSF---SPPRAHNLRLLYSSSAVVSCKLPPASDDP-----KGNE 60

Query: 61  NRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI 120
           NR+AKLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI
Sbjct: 61  NRVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI 120

Query: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAA 180
           NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGG DVLF FILLG+VAA
Sbjct: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAA 180

Query: 181 FVRKFFGRREEDDDDY 195
           FVRK  GRRE DDDDY
Sbjct: 181 FVRKILGRREADDDDY 188

[Close]

BLAST of Lsi11G007720 vs. ExPASy TrEMBL
Match: A0A6J1I348 (uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 1.3e-79
Identity = 163/195 (83.59%), Postives = 177/195 (90.77%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENR 60
           MSLASSQLSFL+T  SFS S  +PRR++N+LHS + +++ KLPP AD+PNG L+RGNENR
Sbjct: 1   MSLASSQLSFLSTTLSFS-SAPTPRRSNNILHSFHPIIASKLPPPADNPNG-LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDDDY 195
           VR+F G REEDDDDY
Sbjct: 181 VRRFLGGREEDDDDY 191

[Close]

BLAST of Lsi11G007720 vs. ExPASy TrEMBL
Match: A0A6J1FDE3 (uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC111444353 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.2e-79
Identity = 162/195 (83.08%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENR 60
           MSLASSQLSFL+T  SFS S  +PRR++N+LHS + +++ KLPP ADDPNG L+RGNENR
Sbjct: 1   MSLASSQLSFLSTTLSFS-SAPTPRRSNNILHSFHPIIASKLPPPADDPNG-LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDDDY 195
           VR+F G R EDDDDY
Sbjct: 181 VRRFLGGRGEDDDDY 191

[Close]

BLAST of Lsi11G007720 vs. ExPASy TrEMBL
Match: A0A6J1DIH1 (uncharacterized protein LOC111020818 OS=Momordica charantia OX=3673 GN=LOC111020818 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.4e-78
Identity = 161/199 (80.90%), Postives = 171/199 (85.93%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFS--FSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKR--- 60
           M+LASSQ SFL    S   + + R PRR   LLHSSNA VS KLPP ADDP+G   +   
Sbjct: 1   MALASSQQSFLTNVLSAAAAAAARCPRRMRKLLHSSNAAVSSKLPP-ADDPDGFSFKSGS 60

Query: 61  GNENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTN 120
           GNENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTN
Sbjct: 61  GNENRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTN 120

Query: 121 IYINPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGT 180
           IYINP VAPPLVGGYGFGYGVPYYGGWGWSPFSFFAP P+VAVGIGGGFD+LFLFI LG+
Sbjct: 121 IYINPPVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPGPSVAVGIGGGFDLLFLFIFLGS 180

Query: 181 VAAFVRKFFGRREEDDDDY 195
           VAA VR+FFG RE+DDDDY
Sbjct: 181 VAAVVRRFFGTREDDDDDY 198

[Close]

BLAST of Lsi11G007720 vs. NCBI nr
Match: XP_038889537.1 (uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida])

HSP 1 Score: 354.0 bits (907), Expect = 8.3e-94
Identity = 179/192 (93.23%), Postives = 187/192 (97.40%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENR 60
           MSLASSQLSFL+TAFSFS S+R+PRRT+NLLHSSNA VSCKLPPAADDPNGLL RG+ENR
Sbjct: 1   MSLASSQLSFLSTAFSFSFSVRTPRRTNNLLHSSNAGVSCKLPPAADDPNGLLNRGSENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAFV 180
           RVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSP VAVGIGGGFD+LFLFILLGTVAAFV
Sbjct: 121 RVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAFV 180

Query: 181 RKFFGRREEDDD 193
           R+FFGRRE+DDD
Sbjct: 181 RRFFGRREDDDD 192

[Close]

BLAST of Lsi11G007720 vs. NCBI nr
Match: XP_038889538.1 (uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida])

HSP 1 Score: 338.6 bits (867), Expect = 3.6e-89
Identity = 174/192 (90.62%), Postives = 183/192 (95.31%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENR 60
           MSLASSQLSFL+TAFSFS S+R+PRRT+NLLHSSNA VSCKLPPAADDP     +G+ENR
Sbjct: 1   MSLASSQLSFLSTAFSFSFSVRTPRRTNNLLHSSNAGVSCKLPPAADDP-----KGSENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAFV 180
           RVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSP VAVGIGGGFD+LFLFILLGTVAAFV
Sbjct: 121 RVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPAVAVGIGGGFDLLFLFILLGTVAAFV 180

Query: 181 RKFFGRREEDDD 193
           R+FFGRRE+DDD
Sbjct: 181 RRFFGRREDDDD 187

[Close]

BLAST of Lsi11G007720 vs. NCBI nr
Match: XP_008451528.1 (PREDICTED: uncharacterized protein LOC103492785 [Cucumis melo] >KAA0048618.1 La-related protein 6 isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 314.7 bits (805), Expect = 5.6e-82
Identity = 167/196 (85.20%), Postives = 175/196 (89.29%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDN--LLHSSNAVVSCKLPPAADDPNGLLKRGNE 60
           MSL SSQLSFL+TAFSFS    SP R  N  LL+SS+AVVSCKLPPA+DDP     +GNE
Sbjct: 1   MSLPSSQLSFLSTAFSFSF---SPPRAHNLRLLYSSSAVVSCKLPPASDDP-----KGNE 60

Query: 61  NRLAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI 120
           NR+AKLAIVTL AG+LTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI
Sbjct: 61  NRVAKLAIVTLMAGILTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYI 120

Query: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAA 180
           NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGG DVLF FILLG+VAA
Sbjct: 121 NPRVAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGLDVLFFFILLGSVAA 180

Query: 181 FVRKFFGRREEDDDDY 195
           FVRK  GRRE DDDDY
Sbjct: 181 FVRKILGRREADDDDY 188

[Close]

BLAST of Lsi11G007720 vs. NCBI nr
Match: XP_022969609.1 (uncharacterized protein LOC111468585 [Cucurbita maxima])

HSP 1 Score: 305.8 bits (782), Expect = 2.6e-79
Identity = 163/195 (83.59%), Postives = 177/195 (90.77%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENR 60
           MSLASSQLSFL+T  SFS S  +PRR++N+LHS + +++ KLPP AD+PNG L+RGNENR
Sbjct: 1   MSLASSQLSFLSTTLSFS-SAPTPRRSNNILHSFHPIIASKLPPPADNPNG-LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDDDY 195
           VR+F G REEDDDDY
Sbjct: 181 VRRFLGGREEDDDDY 191

[Close]

BLAST of Lsi11G007720 vs. NCBI nr
Match: XP_022938204.1 (uncharacterized protein LOC111444353 [Cucurbita moschata] >KAG6586091.1 hypothetical protein SDJN03_18824, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303.5 bits (776), Expect = 1.3e-78
Identity = 162/195 (83.08%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 1   MSLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENR 60
           MSLASSQLSFL+T  SFS S  +PRR++N+LHS + +++ KLPP ADDPNG L+RGNENR
Sbjct: 1   MSLASSQLSFLSTTLSFS-SAPTPRRSNNILHSFHPIIASKLPPPADDPNG-LERGNENR 60

Query: 61  LAKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINP 120
           LAKLAIVTLAAGVL+LGSVHDASAAKTGGRVGGQAFRSAAPR SSPRINNNSRTNIYINP
Sbjct: 61  LAKLAIVTLAAGVLSLGSVHDASAAKTGGRVGGQAFRSAAPRSSSPRINNNSRTNIYINP 120

Query: 121 RVAPPLVGGYGFGYGVPYY-GGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAF 180
           RVAPPLVGGY  GYGVPYY GGWGWSPFSFFAP+P+VAVGIGGGFDVL LFI LGTVAAF
Sbjct: 121 RVAPPLVGGY--GYGVPYYGGGWGWSPFSFFAPTPSVAVGIGGGFDVLVLFIFLGTVAAF 180

Query: 181 VRKFFGRREEDDDDY 195
           VR+F G R EDDDDY
Sbjct: 181 VRRFLGGRGEDDDDY 191

[Close]

BLAST of Lsi11G007720 vs. TAIR 10
Match: AT5G57345.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-52
Identity = 115/195 (58.97%), Postives = 141/195 (72.31%), Query Frame = 0


Query: 2   SLASSQLSFLATAFSFSVSIRSPRRTDNLLHSSNAVVSCKLPPAADDPNGLLKRGNENRL 61
           ++ASS+ SFL+  FSF  S + P+   NL   ++  + CK     D+ +    R NEN+L
Sbjct: 5   AIASSRQSFLSNNFSFQHSFK-PKSNVNLTRPNS--ICCKSSHHDDETDS--SRKNENQL 64

Query: 62  AKLAIVTLAAGVLTLGSVHDASAAKTGGRVGGQAFRSAAPRPSSPRINNNSRTNIYINPR 121
           AKLAI TLA GVL LGSV DA AAK+GGR+GGQAFRS+APRP  PRINN SRTNIY+NP+
Sbjct: 65  AKLAIATLAVGVLALGSVGDAFAAKSGGRIGGQAFRSSAPRP-PPRINNRSRTNIYVNPQ 124

Query: 122 VAPPLVGGYGFGYGVPYYGGWGWSPFSFFAPSPTVAVGIGGGFDVLFLFILLGTVAAFVR 181
           VAPPL+GGYG+G     YGG+GWSPFSFFAP P VAVG+GGGFD+L LF+  G  +A  R
Sbjct: 125 VAPPLIGGYGYG-----YGGYGWSPFSFFAPGPAVAVGVGGGFDLLLLFMFFGAASAVAR 184

Query: 182 KFFGRR--EEDDDDY 195
            FF  R  E+D+DDY
Sbjct: 185 NFFRSRNDEDDEDDY 188

The following BLAST results are available for this feature:

BLAST of Lsi11G007720 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G007720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U097	2.7e-82	85.20	La-related protein 6 isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BRQ8	2.7e-82	85.20	uncharacterized protein LOC103492785 OS=Cucumis melo OX=3656 GN=LOC103492785 PE=...	[more]
A0A6J1I348	1.3e-79	83.59	uncharacterized protein LOC111468585 OS=Cucurbita maxima OX=3661 GN=LOC111468585...	[more]
A0A6J1FDE3	6.2e-79	83.08	uncharacterized protein LOC111444353 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]
A0A6J1DIH1	2.4e-78	80.90	uncharacterized protein LOC111020818 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Lsi11G007720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889537.1	8.3e-94	93.23	uncharacterized protein LOC120079434 isoform X1 [Benincasa hispida]	[more]
XP_038889538.1	3.6e-89	90.63	uncharacterized protein LOC120079434 isoform X2 [Benincasa hispida]	[more]
XP_008451528.1	5.6e-82	85.20	PREDICTED: uncharacterized protein LOC103492785 [Cucumis melo] >KAA0048618.1 La-...	[more]
XP_022969609.1	2.6e-79	83.59	uncharacterized protein LOC111468585 [Cucurbita maxima]	[more]
XP_022938204.1	1.3e-78	83.08	uncharacterized protein LOC111444353 [Cucurbita moschata] >KAG6586091.1 hypothet...	[more]

BLAST of Lsi11G007720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57345.1	1.3e-52	58.97	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..111
None	No IPR available	PANTHER	PTHR37768:SF2	OS06G0694800 PROTEIN	coord: 1..194
None	No IPR available	PANTHER	PTHR37768	OS06G0694800 PROTEIN	coord: 1..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G007720.1	Lsi11G007720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071470	cellular response to osmotic stress
biological_process	GO:0034599	cellular response to oxidative stress
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane