Lsi11G007550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G007550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Syntaxin-6_N domain-containing protein
Location	chr11: 8488111 .. 8490016 (+)
RNA-Seq Expression	Lsi11G007550
Synteny	Lsi11G007550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGCCTTGTAAAAAGAAAGGTGGGGAATTGTGGAAGAAAGAATCAACAACAGAGAGAGCTCCATCTCTGTCTCATGGTTGTGTGAGCTTTGCCTCTTTGTATTCATCTCTCTTCTTGCTTCTCTCAAGCAACCAACACACCAATTACTCAACAATCAAACCCTTTTACCTTCCCATTTCTTCCATCAAACCAACATTTCATTTTCCCATTTTGATGATCTTTGATTTCTAAACCTCGCTCTTCCTTCTTTCATATTTTCATAATCTCTGCTCTGTTTTCCCCTCTTTATCCACAATGTTAGTTGCAAATAGTTTCGATTTGTGGAAGAAGGATGGGTTCTTTTCTGCCGCCGAGCAGGTCCAAGAATCTGCCGATACGTACGTTTCTTTTACTATTCCTTTGATTTGAGTTTTTTTTTTTTCTCGCTCTCCATGTTTGATTGAGTTTTATTTCGATTTGTTGTTGAATTTATTGGGTTCTTTTCTGGGTTAGTTTTATTTGAGTCTGTGATGATCTGTTTGTGGGTGTTTTGTTCTTCTCTCTTTGTATTTTTCCTTTTCAAGATGCTTAAGCTTATGTTCTCTGTTTTCGTTGGATGAGTTTAGTGATGGTTCAAGAACCTAAAATTTATCCCCCAAAGAGGTTTTCTTTTCTGTGTGCTGCATTTGGAAAGCTGCTCTGAATTCTATAAGTTTATATGCTTAATGGGGTTTGGAGGGATTCTACTGCTTTCTTCATTTGTTGACCATTTCTTAGGCCATTAAACTTCAGTTAGTCAAAGATGTTTCTATTGCCTTTTTCTTCTATATTGATTCTTCTATTGATTTTTTATTTCAGAATGGAGTTTGCATATAGGACATGGATAAGAGAGAAAAGAGAAGGGCTAAGTCCAGGTGATTTGGACGAACTCCGTCGAGAGGTGCAAACGGCTCTTGGCACAGCCAAATGGCAGGTAGGATACTGAATTGAACTAATAAATGCATCTGTTCTATTTCTTATTGTCATGAAAATAGAAGATATTTCTTCCAAAATCTAATGGAATGCTTAATTAGGATTCTTAGATGATAATCCAGATGTATAACTAGAGTGACAACTTACAATGGGTCATGTTTGATAGTCAAGCTATATTTATGCATTGATTTATTTGGACCTATAATTCTACTTTTTACAAACCACAAACATGAATGTTGTTTTTTCTGTTGACAATTAGCTGGAAGAGTTTGAGAAAGCTGTTAGAGTTAGCTATCGTTCCAGAAGTGAAGAACATTTGTTGGAAAGACATAGACTATTTATTGCAGCCATTGGAAATCAAATTTCCCATGTTGAAGCTGCTTTAAGAAAATCTTATGACAAAGAGGGCAAGCAGCCACTTCGATGGGTAAATCTAAATGAGGAAGAATGCAATGATTTGGCTACATTTCTCTCTGGCATATCGCAAGTACCACGAAGTGCAAAAACCGAATCTTCTGTGTGTAGGTCTTCAGCAAAAAGTTCTATATCTGAGAATCATGAACGATTAGTGGCAGATATGAATCTTACTTCTACCTGTAGCTTGAGTAATTCCTCTAAAATGAAGGGCAGTGAATATGTTAATGCAGTAGATATAGATTCACTGAAAGTCAAAGATCTGGAAGTGAAAGAAAGTTTTAGAAGAGTAGATGATGCACTATGCGAAATGGATAGATCAGCAAAGGCAAGGAGAGCAAATCCGCCAACTGCTCCTGACCTGCAAATTGTAATTCTGGATGAAAATCAAGAGAGAAAACAGTCTATTACAAGTTTAGAAGTTTCAAGAAAAGGAAAATCGGGATCAATCTTCTGGAAACACGGATGTGGAAATTTTTCTCAGGTGAGCATTGCAGGGAACTGCTTCAATCTGGTAGACTTGGTTTTGTTTGTCTTTTAG

mRNA sequence

TAGCCTTGTAAAAAGAAAGGTGGGGAATTGTGGAAGAAAGAATCAACAACAGAGAGAGCTCCATCTCTGTCTCATGGTTGTGTGAGCTTTGCCTCTTTGTATTCATCTCTCTTCTTGCTTCTCTCAAGCAACCAACACACCAATTACTCAACAATCAAACCCTTTTACCTTCCCATTTCTTCCATCAAACCAACATTTCATTTTCCCATTTTGATGATCTTTGATTTCTAAACCTCGCTCTTCCTTCTTTCATATTTTCATAATCTCTGCTCTGTTTTCCCCTCTTTATCCACAATGTTAGTTGCAAATAGTTTCGATTTGTGGAAGAAGGATGGGTTCTTTTCTGCCGCCGAGCAGGTCCAAGAATCTGCCGATACAATGGAGTTTGCATATAGGACATGGATAAGAGAGAAAAGAGAAGGGCTAAGTCCAGGTGATTTGGACGAACTCCGTCGAGAGGTGCAAACGGCTCTTGGCACAGCCAAATGGCAGCTGGAAGAGTTTGAGAAAGCTGTTAGAGTTAGCTATCGTTCCAGAAGTGAAGAACATTTGTTGGAAAGACATAGACTATTTATTGCAGCCATTGGAAATCAAATTTCCCATGTTGAAGCTGCTTTAAGAAAATCTTATGACAAAGAGGGCAAGCAGCCACTTCGATGGGTAAATCTAAATGAGGAAGAATGCAATGATTTGGCTACATTTCTCTCTGGCATATCGCAAGTACCACGAAGTGCAAAAACCGAATCTTCTGTGTGTAGGTCTTCAGCAAAAAGTTCTATATCTGAGAATCATGAACGATTAGTGGCAGATATGAATCTTACTTCTACCTGTAGCTTGAGTAATTCCTCTAAAATGAAGGGCAGTGAATATGTTAATGCAGTAGATATAGATTCACTGAAAGTCAAAGATCTGGAAGTGAAAGAAAGTTTTAGAAGAGTAGATGATGCACTATGCGAAATGGATAGATCAGCAAAGGCAAGGAGAGCAAATCCGCCAACTGCTCCTGACCTGCAAATTGTAATTCTGGATGAAAATCAAGAGAGAAAACAGTCTATTACAAGTTTAGAAGTTTCAAGAAAAGGAAAATCGGGATCAATCTTCTGGAAACACGGATGTGGAAATTTTTCTCAGGTGAGCATTGCAGGGAACTGCTTCAATCTGGTAGACTTGGTTTTGTTTGTCTTTTAG

Coding sequence (CDS)

ATGTTAGTTGCAAATAGTTTCGATTTGTGGAAGAAGGATGGGTTCTTTTCTGCCGCCGAGCAGGTCCAAGAATCTGCCGATACAATGGAGTTTGCATATAGGACATGGATAAGAGAGAAAAGAGAAGGGCTAAGTCCAGGTGATTTGGACGAACTCCGTCGAGAGGTGCAAACGGCTCTTGGCACAGCCAAATGGCAGCTGGAAGAGTTTGAGAAAGCTGTTAGAGTTAGCTATCGTTCCAGAAGTGAAGAACATTTGTTGGAAAGACATAGACTATTTATTGCAGCCATTGGAAATCAAATTTCCCATGTTGAAGCTGCTTTAAGAAAATCTTATGACAAAGAGGGCAAGCAGCCACTTCGATGGGTAAATCTAAATGAGGAAGAATGCAATGATTTGGCTACATTTCTCTCTGGCATATCGCAAGTACCACGAAGTGCAAAAACCGAATCTTCTGTGTGTAGGTCTTCAGCAAAAAGTTCTATATCTGAGAATCATGAACGATTAGTGGCAGATATGAATCTTACTTCTACCTGTAGCTTGAGTAATTCCTCTAAAATGAAGGGCAGTGAATATGTTAATGCAGTAGATATAGATTCACTGAAAGTCAAAGATCTGGAAGTGAAAGAAAGTTTTAGAAGAGTAGATGATGCACTATGCGAAATGGATAGATCAGCAAAGGCAAGGAGAGCAAATCCGCCAACTGCTCCTGACCTGCAAATTGTAATTCTGGATGAAAATCAAGAGAGAAAACAGTCTATTACAAGTTTAGAAGTTTCAAGAAAAGGAAAATCGGGATCAATCTTCTGGAAACACGGATGTGGAAATTTTTCTCAGGTGAGCATTGCAGGGAACTGCTTCAATCTGGTAGACTTGGTTTTGTTTGTCTTTTAG

Protein sequence

MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTALGTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPLRWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTSTCSLSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAPDLQIVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQVSIAGNCFNLVDLVLFVF

Homology

[Close]

BLAST of Lsi11G007550 vs. ExPASy TrEMBL
Match: A0A0A0LMD6 (Syntaxin-6_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G058690 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 2.2e-139
Identity = 256/279 (91.76%), Postives = 269/279 (96.42%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPL 120
           GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+QPL
Sbjct: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGRQPL 120

Query: 121 RWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTSTCS 180
           RWVNLNEEECNDLATFLSG+S+VP+SAKTESSVCRSSAKSSI ENHER+VADMN TSTCS
Sbjct: 121 RWVNLNEEECNDLATFLSGVSEVPQSAKTESSVCRSSAKSSIYENHERVVADMNPTSTCS 180

Query: 181 LSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAPDLQ 240
           LSNSSKMKG++YV+AVDIDS KVKDLEVKESFRRVDDALC+MDRS K RRA+PPT PDLQ
Sbjct: 181 LSNSSKMKGNKYVDAVDIDSPKVKDLEVKESFRRVDDALCKMDRSTKVRRASPPTVPDLQ 240

Query: 241 IVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQ 280
           IVI+DENQERKQSITSLE SRKGKS S+FWK GCGNFSQ
Sbjct: 241 IVIVDENQERKQSITSLEASRKGKSASVFWKRGCGNFSQ 279

[Close]

BLAST of Lsi11G007550 vs. ExPASy TrEMBL
Match: A0A1S3BS56 (uncharacterized protein LOC103492935 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492935 PE=4 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 1.3e-136
Identity = 251/280 (89.64%), Postives = 268/280 (95.71%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPL 120
           GTAKWQLEEFEKAVRV+ RSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+QPL
Sbjct: 61  GTAKWQLEEFEKAVRVNCRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGRQPL 120

Query: 121 RWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTSTCS 180
           RWVNLNEEECNDLATFLSG+S+VP+SAKTESS+CRSSAKSSI ENHER+VADMN TSTCS
Sbjct: 121 RWVNLNEEECNDLATFLSGVSEVPQSAKTESSLCRSSAKSSIYENHERVVADMNPTSTCS 180

Query: 181 LSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAPDLQ 240
           LSNSSKMKG++YV+AVDIDS KVKDLEVKE+F RVDDALC+MDRS K RRA+PPT PDLQ
Sbjct: 181 LSNSSKMKGNKYVDAVDIDSSKVKDLEVKENFGRVDDALCKMDRSTKVRRASPPTVPDLQ 240

Query: 241 IVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQV 281
           IVI+DENQERKQSITSLEVSRKGKSG +FWK GCG FSQ+
Sbjct: 241 IVIVDENQERKQSITSLEVSRKGKSGPVFWKRGCGKFSQL 280

[Close]

BLAST of Lsi11G007550 vs. ExPASy TrEMBL
Match: A0A1S4E2P4 (uncharacterized protein LOC103492935 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492935 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.5e-135
Identity = 251/283 (88.69%), Postives = 268/283 (94.70%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQ---LEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGK 120
           GTAKWQ   LEEFEKAVRV+ RSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+
Sbjct: 61  GTAKWQVGYLEEFEKAVRVNCRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGR 120

Query: 121 QPLRWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTS 180
           QPLRWVNLNEEECNDLATFLSG+S+VP+SAKTESS+CRSSAKSSI ENHER+VADMN TS
Sbjct: 121 QPLRWVNLNEEECNDLATFLSGVSEVPQSAKTESSLCRSSAKSSIYENHERVVADMNPTS 180

Query: 181 TCSLSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAP 240
           TCSLSNSSKMKG++YV+AVDIDS KVKDLEVKE+F RVDDALC+MDRS K RRA+PPT P
Sbjct: 181 TCSLSNSSKMKGNKYVDAVDIDSSKVKDLEVKENFGRVDDALCKMDRSTKVRRASPPTVP 240

Query: 241 DLQIVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQV 281
           DLQIVI+DENQERKQSITSLEVSRKGKSG +FWK GCG FSQ+
Sbjct: 241 DLQIVIVDENQERKQSITSLEVSRKGKSGPVFWKRGCGKFSQL 283

[Close]

BLAST of Lsi11G007550 vs. ExPASy TrEMBL
Match: A0A1S4E2P6 (uncharacterized protein LOC103492935 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492935 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.5e-135
Identity = 251/283 (88.69%), Postives = 268/283 (94.70%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQ---LEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGK 120
           GTAKWQ   LEEFEKAVRV+ RSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+
Sbjct: 61  GTAKWQVGYLEEFEKAVRVNCRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGR 120

Query: 121 QPLRWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTS 180
           QPLRWVNLNEEECNDLATFLSG+S+VP+SAKTESS+CRSSAKSSI ENHER+VADMN TS
Sbjct: 121 QPLRWVNLNEEECNDLATFLSGVSEVPQSAKTESSLCRSSAKSSIYENHERVVADMNPTS 180

Query: 181 TCSLSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAP 240
           TCSLSNSSKMKG++YV+AVDIDS KVKDLEVKE+F RVDDALC+MDRS K RRA+PPT P
Sbjct: 181 TCSLSNSSKMKGNKYVDAVDIDSSKVKDLEVKENFGRVDDALCKMDRSTKVRRASPPTVP 240

Query: 241 DLQIVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQV 281
           DLQIVI+DENQERKQSITSLEVSRKGKSG +FWK GCG FSQ+
Sbjct: 241 DLQIVIVDENQERKQSITSLEVSRKGKSGPVFWKRGCGKFSQL 283

[Close]

BLAST of Lsi11G007550 vs. ExPASy TrEMBL
Match: A0A5A7UMT3 (Syntaxin-6_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G00570 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 5.0e-120
Identity = 223/252 (88.49%), Postives = 240/252 (95.24%), Query Frame = 0


Query: 29  MEFAYRTWIREKREGLSPGDLDELRREVQTALGTAKWQLEEFEKAVRVSYRSRSEEHLLE 88
           MEFAYRTWIRE+REGLSP DLDELRREVQTALGTAKWQLEEFEKAVRV+ RSRSEEHLLE
Sbjct: 75  MEFAYRTWIRERREGLSPDDLDELRREVQTALGTAKWQLEEFEKAVRVNCRSRSEEHLLE 134

Query: 89  RHRLFIAAIGNQISHVEAALRKSYDKEGKQPLRWVNLNEEECNDLATFLSGISQVPRSAK 148
           RHRLFIAAIGNQISHVEAALRKSYDKEG+QPLRWVNLNEEECNDLATFLSG+S+VP+SAK
Sbjct: 135 RHRLFIAAIGNQISHVEAALRKSYDKEGRQPLRWVNLNEEECNDLATFLSGVSEVPQSAK 194

Query: 149 TESSVCRSSAKSSISENHERLVADMNLTSTCSLSNSSKMKGSEYVNAVDIDSLKVKDLEV 208
           TESS+CRSSAKSSI ENHER+VADMN TSTCSLSNSSKMKG++YV+AVDIDS KVKDLEV
Sbjct: 195 TESSLCRSSAKSSIYENHERVVADMNPTSTCSLSNSSKMKGNKYVDAVDIDSSKVKDLEV 254

Query: 209 KESFRRVDDALCEMDRSAKARRANPPTAPDLQIVILDENQERKQSITSLEVSRKGKSGSI 268
           KE+F RVDDALC+MDRS K RRA+PPT PDLQIVI+DENQERKQSITSLEVSRKGKSG +
Sbjct: 255 KENFGRVDDALCKMDRSTKVRRASPPTVPDLQIVIVDENQERKQSITSLEVSRKGKSGPV 314

Query: 269 FWKHGCGNFSQV 281
           FWK GCG FSQ+
Sbjct: 315 FWKRGCGKFSQL 326

[Close]

BLAST of Lsi11G007550 vs. NCBI nr
Match: XP_031737289.1 (uncharacterized protein LOC101213145 [Cucumis sativus] >KGN61136.1 hypothetical protein Csa_021232 [Cucumis sativus])

HSP 1 Score: 505.0 bits (1299), Expect = 4.5e-139
Identity = 256/279 (91.76%), Postives = 269/279 (96.42%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPL 120
           GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+QPL
Sbjct: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGRQPL 120

Query: 121 RWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTSTCS 180
           RWVNLNEEECNDLATFLSG+S+VP+SAKTESSVCRSSAKSSI ENHER+VADMN TSTCS
Sbjct: 121 RWVNLNEEECNDLATFLSGVSEVPQSAKTESSVCRSSAKSSIYENHERVVADMNPTSTCS 180

Query: 181 LSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAPDLQ 240
           LSNSSKMKG++YV+AVDIDS KVKDLEVKESFRRVDDALC+MDRS K RRA+PPT PDLQ
Sbjct: 181 LSNSSKMKGNKYVDAVDIDSPKVKDLEVKESFRRVDDALCKMDRSTKVRRASPPTVPDLQ 240

Query: 241 IVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQ 280
           IVI+DENQERKQSITSLE SRKGKS S+FWK GCGNFSQ
Sbjct: 241 IVIVDENQERKQSITSLEASRKGKSASVFWKRGCGNFSQ 279

[Close]

BLAST of Lsi11G007550 vs. NCBI nr
Match: XP_038891183.1 (uncharacterized protein LOC120080557 [Benincasa hispida])

HSP 1 Score: 504.2 bits (1297), Expect = 7.6e-139
Identity = 257/280 (91.79%), Postives = 269/280 (96.07%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREG+SP DLDELRREVQ AL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGISPDDLDELRREVQMAL 60

Query: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPL 120
           GTAKWQLEEF KAVRVSYRSR+EEHLLERH LFIAAIGNQISHVEAALRKSYDKEGKQPL
Sbjct: 61  GTAKWQLEEFTKAVRVSYRSRNEEHLLERHGLFIAAIGNQISHVEAALRKSYDKEGKQPL 120

Query: 121 RWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTSTCS 180
           RWVNLNEEEC+DLATFLSGISQVP+SAKTESSVCRSSAK+SI ENHER+VADM LTSTCS
Sbjct: 121 RWVNLNEEECDDLATFLSGISQVPQSAKTESSVCRSSAKNSIYENHERVVADMKLTSTCS 180

Query: 181 LSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAPDLQ 240
            SNSSKMKG+EY NAVDIDS KVKDLEVKESFRRVDDALC+MDRS KARRA+PPTAPDLQ
Sbjct: 181 SSNSSKMKGTEYANAVDIDSQKVKDLEVKESFRRVDDALCKMDRSTKARRASPPTAPDLQ 240

Query: 241 IVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQV 281
           IVI+DENQERKQSITSLEVSRKGKSGS+FWK GCGNFSQ+
Sbjct: 241 IVIVDENQERKQSITSLEVSRKGKSGSVFWKRGCGNFSQL 280

[Close]

BLAST of Lsi11G007550 vs. NCBI nr
Match: XP_008451732.1 (PREDICTED: uncharacterized protein LOC103492935 isoform X3 [Cucumis melo])

HSP 1 Score: 495.7 bits (1275), Expect = 2.7e-136
Identity = 251/280 (89.64%), Postives = 268/280 (95.71%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPL 120
           GTAKWQLEEFEKAVRV+ RSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+QPL
Sbjct: 61  GTAKWQLEEFEKAVRVNCRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGRQPL 120

Query: 121 RWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTSTCS 180
           RWVNLNEEECNDLATFLSG+S+VP+SAKTESS+CRSSAKSSI ENHER+VADMN TSTCS
Sbjct: 121 RWVNLNEEECNDLATFLSGVSEVPQSAKTESSLCRSSAKSSIYENHERVVADMNPTSTCS 180

Query: 181 LSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAPDLQ 240
           LSNSSKMKG++YV+AVDIDS KVKDLEVKE+F RVDDALC+MDRS K RRA+PPT PDLQ
Sbjct: 181 LSNSSKMKGNKYVDAVDIDSSKVKDLEVKENFGRVDDALCKMDRSTKVRRASPPTVPDLQ 240

Query: 241 IVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQV 281
           IVI+DENQERKQSITSLEVSRKGKSG +FWK GCG FSQ+
Sbjct: 241 IVIVDENQERKQSITSLEVSRKGKSGPVFWKRGCGKFSQL 280

[Close]

BLAST of Lsi11G007550 vs. NCBI nr
Match: XP_016902501.1 (PREDICTED: uncharacterized protein LOC103492935 isoform X2 [Cucumis melo])

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-134
Identity = 251/283 (88.69%), Postives = 268/283 (94.70%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQ---LEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGK 120
           GTAKWQ   LEEFEKAVRV+ RSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+
Sbjct: 61  GTAKWQVGYLEEFEKAVRVNCRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGR 120

Query: 121 QPLRWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTS 180
           QPLRWVNLNEEECNDLATFLSG+S+VP+SAKTESS+CRSSAKSSI ENHER+VADMN TS
Sbjct: 121 QPLRWVNLNEEECNDLATFLSGVSEVPQSAKTESSLCRSSAKSSIYENHERVVADMNPTS 180

Query: 181 TCSLSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAP 240
           TCSLSNSSKMKG++YV+AVDIDS KVKDLEVKE+F RVDDALC+MDRS K RRA+PPT P
Sbjct: 181 TCSLSNSSKMKGNKYVDAVDIDSSKVKDLEVKENFGRVDDALCKMDRSTKVRRASPPTVP 240

Query: 241 DLQIVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQV 281
           DLQIVI+DENQERKQSITSLEVSRKGKSG +FWK GCG FSQ+
Sbjct: 241 DLQIVIVDENQERKQSITSLEVSRKGKSGPVFWKRGCGKFSQL 283

[Close]

BLAST of Lsi11G007550 vs. NCBI nr
Match: XP_016902497.1 (PREDICTED: uncharacterized protein LOC103492935 isoform X1 [Cucumis melo])

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-134
Identity = 251/283 (88.69%), Postives = 268/283 (94.70%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRE+REGLSP DLDELRREVQTAL
Sbjct: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIRERREGLSPDDLDELRREVQTAL 60

Query: 61  GTAKWQ---LEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGK 120
           GTAKWQ   LEEFEKAVRV+ RSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEG+
Sbjct: 61  GTAKWQVGYLEEFEKAVRVNCRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGR 120

Query: 121 QPLRWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTS 180
           QPLRWVNLNEEECNDLATFLSG+S+VP+SAKTESS+CRSSAKSSI ENHER+VADMN TS
Sbjct: 121 QPLRWVNLNEEECNDLATFLSGVSEVPQSAKTESSLCRSSAKSSIYENHERVVADMNPTS 180

Query: 181 TCSLSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRANPPTAP 240
           TCSLSNSSKMKG++YV+AVDIDS KVKDLEVKE+F RVDDALC+MDRS K RRA+PPT P
Sbjct: 181 TCSLSNSSKMKGNKYVDAVDIDSSKVKDLEVKENFGRVDDALCKMDRSTKVRRASPPTVP 240

Query: 241 DLQIVILDENQERKQSITSLEVSRKGKSGSIFWKHGCGNFSQV 281
           DLQIVI+DENQERKQSITSLEVSRKGKSG +FWK GCG FSQ+
Sbjct: 241 DLQIVIVDENQERKQSITSLEVSRKGKSGPVFWKRGCGKFSQL 283

[Close]

BLAST of Lsi11G007550 vs. TAIR 10
Match: AT4G30240.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 185.7 bits (470), Expect = 5.6e-47
Identity = 115/287 (40.07%), Postives = 171/287 (59.58%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           M+VANSFDLW+KD FFSAAE+VQESAD ME AYR W +EKR+G    + DEL +E+Q AL
Sbjct: 1   MMVANSFDLWQKDVFFSAAEEVQESADIMESAYRLWFKEKRDGRVSVESDELCKELQAAL 60

Query: 61  GTAKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPL 120
            TAKWQLEEFE+AV +S+ +  ++  L RH+ F+ AI NQI  VE+ L +S  + GKQPL
Sbjct: 61  STAKWQLEEFERAVSLSHGNCRDDTTLTRHKQFVTAIENQIYQVESTLLESLSENGKQPL 120

Query: 121 RWVNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSSISENHERLVADMNLTSTCS 180
           RWV+LN+EE +DLA FLSG SQ   S  ++S   R S+ SS++EN   +           
Sbjct: 121 RWVDLNKEERDDLAMFLSGSSQTSESLNSDSINLRDSSTSSVAENPRGI----------- 180

Query: 181 LSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRA-NPPTAPDL 240
              + + +G  Y ++ D   + + D+   ES           D+    RR  + P  P++
Sbjct: 181 ---NGRREGRCYGDSPDC-VIDIDDIGSPES----------ADKKGGTRRTWSSPNVPNI 240

Query: 241 QIVILD-----ENQERKQSITSLEVSRKGKSGS-IFWKHGCGNFSQV 281
             + ++     + +ER++ ++ +E + K K    +FW   C +++Q+
Sbjct: 241 SALRINVPVNAKEEEREKFLSHIEDTPKEKGAKPMFWLQRCRDYNQL 262

[Close]

BLAST of Lsi11G007550 vs. TAIR 10
Match: AT2G18860.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 173.7 bits (439), Expect = 2.2e-43
Identity = 123/316 (38.92%), Postives = 174/316 (55.06%), Query Frame = 0


Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTAL 60
           M+V NSFDLW+KD FFSAAE+VQ+S D ME AYR WIREK+        DE+ +E+Q AL
Sbjct: 1   MMVVNSFDLWQKDVFFSAAEEVQKSTDIMESAYRLWIREKK--------DEICKELQAAL 60

Query: 61  GTAKWQLEEFEKAVRVSY-RSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQP 120
           GTAKWQLEEFEKAVR+S+ R    +    RH+ F+ AI NQI  VE +L+++Y + GK+P
Sbjct: 61  GTAKWQLEEFEKAVRLSHKRCGDNDSSSTRHKQFVTAIENQIHRVETSLQEAYSENGKKP 120

Query: 121 LRWVNLNEEECNDLATFLSGISQVPRSAKTESSV-CRSSAKSSISENHERLVADMNLTST 180
           LRWV+LNEEE +DLA FLSG S+  +S   ESS+  R S  SS+ EN   + A +     
Sbjct: 121 LRWVDLNEEERDDLAMFLSGSSRTSQSFSGESSIKSRESTNSSLVENVMEVSAKVTF--- 180

Query: 181 CSLSNSSKMKGSEYVNAVDIDSLKVKDLEVKESFRRVDDALCEMDRSAKARRA-NPPTAP 240
                 +K+ G      +DI+              RV     + ++S   RR  + P   
Sbjct: 181 ----KKAKVYGDGSECVIDIE-------------ERVTPG--QAEKSVGLRRIWSSPNFN 240

Query: 241 DLQIVIL--DENQERKQSITSLEVSRKGK-SGSIFWKHGCGNFSQVSIAGNCFN------ 298
            L+I++   D  +E++  +  +E + K K + S+ W     + +Q+     CF       
Sbjct: 241 SLRIIVPGGDNEEEKETLVAQIEATPKVKGTKSVLWMQRLPDHNQLFDKTGCFQNPIRLP 286

[Close]

BLAST of Lsi11G007550 vs. TAIR 10
Match: AT1G27700.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 136.0 bits (341), Expect = 5.1e-32
Identity = 71/159 (44.65%), Postives = 104/159 (65.41%), Query Frame = 0


Query: 3   VANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWIREKREGLSPGDLDELRREVQTALGT 62
           +  S D W+KD FF AAE+VQESAD ME AYRTW+  KR+     D ++L R++  ALGT
Sbjct: 1   MTTSLDRWEKDPFFPAAEEVQESADRMESAYRTWLNGKRDSSKVWDSEQLHRDLHAALGT 60

Query: 63  AKWQLEEFEKAVRVSYRSRSEEHLLERHRLFIAAIGNQISHVEAALRKSYDKEGKQPLRW 122
            KWQL+EF+KAV+ SY +R  +   +RHR F   +  Q+S +E +L+++   +GK   RW
Sbjct: 61  TKWQLDEFQKAVKSSYDNRLSDETRDRHREFTFVMEAQVSKIEKSLKEAAQSDGKGTPRW 120

Query: 123 VNLNEEECNDLATFLSGISQVPRSAKTESSVCRSSAKSS 162
           V L+E++ N+LA FL+G S+   SAK   +  R +A ++
Sbjct: 121 VRLDEDDRNELALFLTGPSE---SAKANPNGHRRTASAA 156

[Close]

BLAST of Lsi11G007550 vs. TAIR 10
Match: AT2G18860.2 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 132.1 bits (331), Expect = 7.3e-31
Identity = 103/288 (35.76%), Postives = 150/288 (52.08%), Query Frame = 0


Query: 29  MEFAYRTWIREKREGLSPGDLDELRREVQTALGTAKWQLEEFEKAVRVSY-RSRSEEHLL 88
           ME AYR WIREK+        DE+ +E+Q ALGTAKWQLEEFEKAVR+S+ R    +   
Sbjct: 10  MESAYRLWIREKK--------DEICKELQAALGTAKWQLEEFEKAVRLSHKRCGDNDSSS 69

Query: 89  ERHRLFIAAIGNQISHVEAALRKSYDKEGKQPLRWVNLNEEECNDLATFLSGISQVPRSA 148
            RH+ F+ AI NQI  VE +L+++Y + GK+PLRWV+LNEEE +DLA FLSG S+  +S 
Sbjct: 70  TRHKQFVTAIENQIHRVETSLQEAYSENGKKPLRWVDLNEEERDDLAMFLSGSSRTSQSF 129

Query: 149 KTESSV-CRSSAKSSISENHERLVADMNLTSTCSLSNSSKMKGSEYVNAVDIDSLKVKDL 208
             ESS+  R S  SS+ EN   + A +           +K+ G      +DI+       
Sbjct: 130 SGESSIKSRESTNSSLVENVMEVSAKVTF-------KKAKVYGDGSECVIDIE------- 189

Query: 209 EVKESFRRVDDALCEMDRSAKARRA-NPPTAPDLQIVIL--DENQERKQSITSLEVSRKG 268
                  RV     + ++S   RR  + P    L+I++   D  +E++  +  +E + K 
Sbjct: 190 ------ERVTPG--QAEKSVGLRRIWSSPNFNSLRIIVPGGDNEEEKETLVAQIEATPKV 249

Query: 269 K-SGSIFWKHGCGNFSQVSIAGNCFN-------------LVDLVLFVF 298
           K + S+ W     + +Q+     CF              +V L+L VF
Sbjct: 250 KGTKSVLWMQRLPDHNQLFDKTGCFQNPIRLPFNHPIKFIVSLLLMVF 267

The following BLAST results are available for this feature:

BLAST of Lsi11G007550 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G007550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMD6	2.2e-139	91.76	Syntaxin-6_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G05869...	[more]
A0A1S3BS56	1.3e-136	89.64	uncharacterized protein LOC103492935 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E2P4	5.5e-135	88.69	uncharacterized protein LOC103492935 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4E2P6	5.5e-135	88.69	uncharacterized protein LOC103492935 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7UMT3	5.0e-120	88.49	Syntaxin-6_N domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of Lsi11G007550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737289.1	4.5e-139	91.76	uncharacterized protein LOC101213145 [Cucumis sativus] >KGN61136.1 hypothetical ...	[more]
XP_038891183.1	7.6e-139	91.79	uncharacterized protein LOC120080557 [Benincasa hispida]	[more]
XP_008451732.1	2.7e-136	89.64	PREDICTED: uncharacterized protein LOC103492935 isoform X3 [Cucumis melo]	[more]
XP_016902501.1	1.1e-134	88.69	PREDICTED: uncharacterized protein LOC103492935 isoform X2 [Cucumis melo]	[more]
XP_016902497.1	1.1e-134	88.69	PREDICTED: uncharacterized protein LOC103492935 isoform X1 [Cucumis melo]	[more]

BLAST of Lsi11G007550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30240.1	5.6e-47	40.07	Syntaxin/t-SNARE family protein	[more]
AT2G18860.1	2.2e-43	38.92	Syntaxin/t-SNARE family protein	[more]
AT1G27700.1	5.1e-32	44.65	Syntaxin/t-SNARE family protein	[more]
AT2G18860.2	7.3e-31	35.76	Syntaxin/t-SNARE family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015260	Syntaxin 6, N-terminal	PFAM	PF09177	Syntaxin-6_N	coord: 13..105 e-value: 5.7E-18 score: 65.3
None	No IPR available	GENE3D	1.20.58.90		coord: 11..112 e-value: 6.5E-15 score: 57.1
None	No IPR available	PANTHER	PTHR34949:SF3	SYNTAXIN/T-SNARE FAMILY PROTEIN	coord: 1..289
None	No IPR available	PANTHER	PTHR34949	OS05G0443700 PROTEIN	coord: 1..289
IPR010989	SNARE	SUPERFAMILY	47661	t-snare proteins	coord: 12..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G007550.1	Lsi11G007550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane