Lsi11G006460 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G006460
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr11: 6810494 .. 6810841 (+)
RNA-Seq Expression	Lsi11G006460
Synteny	Lsi11G006460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTAAAGCGACGGATTCGAAGGCGGTGGTGACGGACCAGACGAGTTCGTCGACGATCGGAATGTTGAGAAGGCCGCGAGGCCAGCGGCGGAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACGTCGGTCCACCGGAATATGGAGGATCTGAGGGAAAATTCGAATTCCATCCAACGGAATGCCGATCTCGGTGACCTGCCCGCCATTGTTGCTCTTTCGCCTTCCTGTAACTCTGGCGAGATTATAGAGAGAGAGACTATGTGGGCGGGGGACCGGGCTTATAAAACTTGGATACAGTGGGAATTATTAGGTGTGGCCGCGTATAGATAG

mRNA sequence

ATGGAGACTAAAGCGACGGATTCGAAGGCGGTGGTGACGGACCAGACGAGTTCGTCGACGATCGGAATGTTGAGAAGGCCGCGAGGCCAGCGGCGGAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACGTCGGTCCACCGGAATATGGAGGATCTGAGGGAAAATTCGAATTCCATCCAACGGAATGCCGATCTCGGTGACCTGCCCGCCATTGTTGCTCTTTCGCCTTCCTGTAACTCTGGCGAGATTATAGAGAGAGAGACTATGTGGGCGGGGGACCGGGCTTATAAAACTTGGATACAGTGGGAATTATTAGGTGTGGCCGCGTATAGATAG

Coding sequence (CDS)

ATGGAGACTAAAGCGACGGATTCGAAGGCGGTGGTGACGGACCAGACGAGTTCGTCGACGATCGGAATGTTGAGAAGGCCGCGAGGCCAGCGGCGGAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACGTCGGTCCACCGGAATATGGAGGATCTGAGGGAAAATTCGAATTCCATCCAACGGAATGCCGATCTCGGTGACCTGCCCGCCATTGTTGCTCTTTCGCCTTCCTGTAACTCTGGCGAGATTATAGAGAGAGAGACTATGTGGGCGGGGGACCGGGCTTATAAAACTTGGATACAGTGGGAATTATTAGGTGTGGCCGCGTATAGATAG

Protein sequence

METKATDSKAVVTDQTSSSTIGMLRRPRGQRRNQAELQFHEKSEERTSVHRNMEDLRENSNSIQRNADLGDLPAIVALSPSCNSGEIIERETMWAGDRAYKTWIQWELLGVAAYR

Homology

[Close]

BLAST of Lsi11G006460 vs. ExPASy TrEMBL
Match: A0A5A7U3P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001510 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.7e-26
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  METKATDSKAVVTDQTSSSTIGMLRRPRGQRRNQA-ELQFHEKSEERTSVHRNMEDLREN 60
          METKATDSKAVVTDQ +SST+ MLRRPR QRRNQA ELQFHEKSEER SVHRNMEDL+EN
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 SNSIQRNADLGDLPAIVALSPSCNSG 86
          SNS+QRNADLGD+PAI ALS S NSG
Sbjct: 61 SNSVQRNADLGDVPAI-ALSASGNSG 85

[Close]

BLAST of Lsi11G006460 vs. ExPASy TrEMBL
Match: A0A0A0LGJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  METKATDSKAVVTDQTSSSTIGMLRRPRGQRRNQA-ELQFHEKSEERTSVHRNM 54
          METKATDSKAVVTDQ +SS +  LRRPR QRRNQA E+QFHEKSEER+ + R +
Sbjct: 1  METKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERSLLLRKV 54

[Close]

BLAST of Lsi11G006460 vs. NCBI nr
Match: KAA0048079.1 (hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 9.8e-26
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = 0


Query: 1  METKATDSKAVVTDQTSSSTIGMLRRPRGQRRNQA-ELQFHEKSEERTSVHRNMEDLREN 60
          METKATDSKAVVTDQ +SST+ MLRRPR QRRNQA ELQFHEKSEER SVHRNMEDL+EN
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 SNSIQRNADLGDLPAIVALSPSCNSG 86
          SNS+QRNADLGD+PAI ALS S NSG
Sbjct: 61 SNSVQRNADLGDVPAI-ALSASGNSG 85

The following BLAST results are available for this feature:

BLAST of Lsi11G006460 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G006460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3P7	4.7e-26	84.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LGJ2	1.3e-07	72.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1	[more]

BLAST of Lsi11G006460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048079.1	9.8e-26	84.88	hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi11G006460 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G006460.1	Lsi11G006460.1	mRNA