Lsi11G006260 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G006260
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Antigenic heat-stable 120 kDa protein
Location	chr11: 6644303 .. 6647140 (+)
RNA-Seq Expression	Lsi11G006260
Synteny	Lsi11G006260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCATTTGTATATTACATATCTTTTGAGAACCCGAGTTAGAAGAAAGAAGAAGAAGCTCTCATCGGAATAAACCAACGAGCAGGTGCGAAAGATCCGTTCGATTCTCAAATCACATTGAAATAACCCATTTACTTCAATCATTTAGAACACTTCTGTAAGATTTCATCTCTTCTATTCTCTTCCGTGTTTGTTTCAATCGAAAATTTTGTTTCCGCAGCGGAATTTTTGCTTTTTCGAAACATTTGAAACCATGGGGTTTCATGATTATGTCTGCTCTTTTCTGGGTAGGAAACATTTTGGCGAAAAAAATTATAGTTTGAAGAATTTGGGTTGTTATTTTGAACTTATTGTTCTGAATTTTTCTGTTCTAATTGTGGTTTTAAGACTGATTAACATCGCTGTTGTGATTTTGAAGTGAAGAGAAAAAAGTTTGAAGAGAAAGATTCATGAGTTCTTCTTCAGTAATAACTCCGGAAGACGTGCTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTCAGGTTGAAGATCATTAACCAGCTCAAAGCCAATGTCAGTATCGCTCCCTCTCCATAATCCTATCTTGTTTCCTTTGAGTTTTAAATTGGTACTATTGAATTCAACTATGTAGTGCCCGGATTAGAATGGCTTTTCAAGTGTTTAAAAACGCTTCTTTTAACATTTAAACTCGATTTCAAGCCTCTAGAAAGTCATTTCAAATATGTCCATAGTATCTAGCTCGCAATAAAGAATGACACACAAAGGGATGTTTCACTCGTGGTTCCTTTTAATTCAATAAAAAGTGTTAGATAATATGATATTAAATTTGTCTTCACCAACCTTAAGCTTCTGGGTCAATCGGCAATTTAACATGGTATCAGAGCAGGTGGTCTAGGGAGGTTTTGTGTTCAAGCCACTTTAATGTTATTTATTCTCCAATTAATATTGATTTCCATTTGTTGGGTCTTCTTTATATGTTAAGCCCACAAGTACAGGGAAGTGTTAGATGATATGATATTAAATTTATATAACGTGAGTTTATGTAGTTGGTTGGAGTAACTAACTCGTAGTATAAGCAAAGCTCACCATACCAAACATAGAATGGTCTTTGAGCCTTTCTTTTCTGGCTTGGCGTTTGAAGTCTCTCTTATGTGTATTTGTCTTGTTGCAGGAGGAGCTTAAGAATACCACCATTAAAATGGTTGAACAAAGCAAAGTCCTCAATACTCCTGGGGCAGAGAAACAGACCAAAAGGGAGCTATTCGATGCTCTTCGACAGGAACTCGAGTTAGTATTATTTCTACTTCACTGTTTAAATGTCTCTTACCTCCCCACTCCTCTTCTTTGTTCACTATTATTTGAACTGAAAGCAACACGAGGAAACACTTTTAAATTTCATTACACCATGTCTTTTCAATTTGTTGTAAGGATTGCACACTTAGAACTGAATCAAATGACGTTGTTTTTGGTTTTCTATTTTGAAAATTGTGTTGTTTTTCTCCCAATTTCTTTACTATGGTTTTCACCTCGCTTAAAAAAATATTTGAATTCTTTGTAAAATTCCAAATTCCAATAACGCTCTTTTAAAAACTACTCTTCTTAGTTAAACAAAAAAAACTCACAAATGAAAGTAGTATTTATAATAATTTTTAAAACTCAAATAATTATTAAAACGGAGCCTGAGCTTTTTGTTTTTCCATCTTGTGAGGTCTGTGGTTGAAGCATACTCATGTTCCTGCGAATACATATATTTGAATGAGCACAAGTTCTTTGTTTTCATCAGGACCAAAAACTTCATTAACAATAAATGTTCTCAAAGTAATTCTTACAAATTAGTTGAAGATAATACATCATCCAGAAGTCTAAAGAAAAGAAGATTATGCATCCTCTTATGTGTTCATAATTTCATAATGTTGTACCACATCTGGAATGTTCATGATAATTGTTTAAGAGAATTCCTCTCTCTCTCTCTCTCTCTCTTCTTTTTTCCCTTTTTCTTGTTCTACTAAATTGTGCATCTGTTTGAACCCTTTGCTGAAGATGTAAGTGAACAAATGACTTGATACATGTTTAAGTTCCTGACAATTGAATTATTCTTGGTTGTTATGCAGAGCACCAGTACTTGAGAAAGCCTCTAAATCTGTTTGGGAATTAATTTTGGACAACAATGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGATTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTCAAAATGGGGATATTGCATTAGTAAAAGAAACTGAGAACGAGAAAGGCAAGGGAAAAGAACCTGAAGATAATTATCACAAGGAGAAATCACACTCTGTTAGGAAAAGGAGTTTCAATGACATGAATGGCAAAGAGGAAAACACTGTTGCAGATGGAGCTGGAGAAAATCTAGCTGTACCTGAAGAACATAGTAGGTCACCTTAGTTGAGTTTGAAGACATAAACATGTCATGAACCTCAATGACGACGGATCTCGCAGGTATACAATGCGATCATTGGTTCAAGCTCTTTCAAATTAATCTGATGAGCATGGCCCGTGTCAAACACACGAAATTTGCCACACACACAACTGATTGGAGTCCAAAATTTTGTTTGTGTGGATGTAGAAGAACACTTCTTTGATCTTTAATGTTCCCATTAACTTTATGTTTAGGAAATAGGGTGGTTAGTGGTAAAAGACTAATTTTTGTAATCTAATCTATCTACCCATGTCAATGCTGTGAAAAGCCATATAAATACTGATTGGCCTTGTTGTGCAGTACTCAGAAGACTATATAGATGAAGCTTTCCAGAATTTTCTTTGTTC

mRNA sequence

AGCATTTGTATATTACATATCTTTTGAGAACCCGAGTTAGAAGAAAGAAGAAGAAGCTCTCATCGGAATAAACCAACGAGCAGGTGCGAAAGATCCGTTCGATTCTCAAATCACATTGAAATAACCCATTTACTTCAATCATTTAGAACACTTCTTGAAGAGAAAAAAGTTTGAAGAGAAAGATTCATGAGTTCTTCTTCAGTAATAACTCCGGAAGACGTGCTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTCAGGTTGAAGATCATTAACCAGCTCAAAGCCAATGAGGAGCTTAAGAATACCACCATTAAAATGGTTGAACAAAGCAAAGTCCTCAATACTCCTGGGGCAGAGAAACAGACCAAAAGGGAGCTATTCGATGCTCTTCGACAGGAACTCGAAGCACCAGTACTTGAGAAAGCCTCTAAATCTGTTTGGGAATTAATTTTGGACAACAATGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGATTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTCAAAATGGGGATATTGCATTAGTAAAAGAAACTGAGAACGAGAAAGGCAAGGGAAAAGAACCTGAAGATAATTATCACAAGGAGAAATCACACTCTGTTAGGAAAAGGAGTTTCAATGACATGAATGGCAAAGAGGAAAACACTGTTGCAGATGGAGCTGGAGAAAATCTAGCTGTACCTGAAGAACATAGTAGGTCACCTTAGTTGAGTTTGAAGACATAAACATGTCATGAACCTCAATGACGACGGATCTCGCAGGTATACAATGCGATCATTGGTTCAAGCTCTTTCAAATTAATCTGATGAGCATGGCCCGTGTCAAACACACGAAATTTGCCACACACACAACTGATTGGAGTCCAAAATTTTGTTTGTGTGGATGTAGAAGAACACTTCTTTGATCTTTAATGTTCCCATTAACTTTATGTTTAGGAAATAGGGTGGTTAGTGGTAAAAGACTAATTTTTGTAATCTAATCTATCTACCCATGTCAATGCTGTGAAAAGCCATATAAATACTGATTGGCCTTGTTGTGCAGTACTCAGAAGACTATATAGATGAAGCTTTCCAGAATTTTCTTTGTTC

Coding sequence (CDS)

ATGAGTTCTTCTTCAGTAATAACTCCGGAAGACGTGCTGGAGTCGCTGATGAATGATGGTACTATCGATTCTCTCAGGTTGAAGATCATTAACCAGCTCAAAGCCAATGAGGAGCTTAAGAATACCACCATTAAAATGGTTGAACAAAGCAAAGTCCTCAATACTCCTGGGGCAGAGAAACAGACCAAAAGGGAGCTATTCGATGCTCTTCGACAGGAACTCGAAGCACCAGTACTTGAGAAAGCCTCTAAATCTGTTTGGGAATTAATTTTGGACAACAATGGATTGGGCAAAGAAATAAATGACACAGTCGAAAAAGTATTTTGTCGATTGAGTGGCAAGGAACCTCCATTGTTTCCTCCTCAAAATGGGGATATTGCATTAGTAAAAGAAACTGAGAACGAGAAAGGCAAGGGAAAAGAACCTGAAGATAATTATCACAAGGAGAAATCACACTCTGTTAGGAAAAGGAGTTTCAATGACATGAATGGCAAAGAGGAAAACACTGTTGCAGATGGAGCTGGAGAAAATCTAGCTGTACCTGAAGAACATAGTAGGTCACCTTAG

Protein sequence

MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEKQTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFPPQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAVPEEHSRSP

Homology

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BLAST of Lsi11G006260 vs. ExPASy TrEMBL
Match: A0A1S3BWQ6 (uncharacterized protein LOC103494285 OS=Cucumis melo OX=3656 GN=LOC103494285 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.5e-90
Identity = 179/188 (95.21%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+  VKETE EKGKGKEPEDNYHKEKS  VRKRSFNDMNGKEEN VADGAGE+LAV
Sbjct: 121 PQNGDMPPVKETELEKGKGKEPEDNYHKEKSQPVRKRSFNDMNGKEENAVADGAGESLAV 180

Query: 181 PEEHSRSP 189
           PEEHSRSP
Sbjct: 181 PEEHSRSP 188

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BLAST of Lsi11G006260 vs. ExPASy TrEMBL
Match: A0A5D3BAZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001180 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.5e-90
Identity = 179/188 (95.21%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+  VKETE EKGKGKEPEDNYHKEKS  VRKRSFNDMNGKEEN VADGAGE+LAV
Sbjct: 121 PQNGDMPPVKETELEKGKGKEPEDNYHKEKSQPVRKRSFNDMNGKEENAVADGAGESLAV 180

Query: 181 PEEHSRSP 189
           PEEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of Lsi11G006260 vs. ExPASy TrEMBL
Match: A0A0A0LGM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G033970 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.5e-90
Identity = 177/188 (94.15%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+  VKETE+EKGKGKEPEDNYHKEKS  +RKRSFNDMNGKEE+T+ADGAGE+LAV
Sbjct: 121 PQNGDMPPVKETEHEKGKGKEPEDNYHKEKSQPLRKRSFNDMNGKEESTIADGAGESLAV 180

Query: 181 PEEHSRSP 189
           PEEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of Lsi11G006260 vs. ExPASy TrEMBL
Match: A0A6J1DQE8 (uncharacterized protein LOC111023270 OS=Momordica charantia OX=3673 GN=LOC111023270 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.4e-89
Identity = 174/188 (92.55%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSS+ITPEDVL+SLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSIITPEDVLQSLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFD+LRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSG+EPPLFP
Sbjct: 61  QTKRELFDSLRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGREPPLFP 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+A VKE ENEKGKGKEPED+Y KEKSHSVRKRSFNDMNG+EEN VA+GAGENLA+
Sbjct: 121 PQNGDMASVKEPENEKGKGKEPEDDYLKEKSHSVRKRSFNDMNGREENNVANGAGENLAL 180

Query: 181 PEEHSRSP 189
           PEE SRSP
Sbjct: 181 PEELSRSP 188

[Close]

BLAST of Lsi11G006260 vs. ExPASy TrEMBL
Match: A0A6J1FDE9 (uncharacterized protein LOC111444361 OS=Cucurbita moschata OX=3662 GN=LOC111444361 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.2e-88
Identity = 174/188 (92.55%), Postives = 178/188 (94.68%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNGGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           P+NGDI  VKETEN+KGKGKEPED+YHKEKS  VRKRSF DMNGK+EN V DGAGENLA 
Sbjct: 121 PENGDIPSVKETENDKGKGKEPEDDYHKEKSQPVRKRSFIDMNGKDENNVVDGAGENLAA 180

Query: 181 PEEHSRSP 189
            EEHSRSP
Sbjct: 181 TEEHSRSP 188

[Close]

BLAST of Lsi11G006260 vs. NCBI nr
Match: XP_038890481.1 (uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida] >XP_038890483.1 uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida] >XP_038890484.1 uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida])

HSP 1 Score: 349.0 bits (894), Expect = 2.6e-92
Identity = 180/188 (95.74%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           M SSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MGSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+  VKETENEKGKGKEPEDNYHKEKSH +RKRSFNDMNGKEEN VADGAGE+LAV
Sbjct: 121 PQNGDMPSVKETENEKGKGKEPEDNYHKEKSHPIRKRSFNDMNGKEENIVADGAGESLAV 180

Query: 181 PEEHSRSP 189
           PEEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of Lsi11G006260 vs. NCBI nr
Match: XP_004144753.1 (uncharacterized protein LOC101204620 [Cucumis sativus] >KGN60993.1 hypothetical protein Csa_021141 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 9.2e-90
Identity = 177/188 (94.15%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+  VKETE+EKGKGKEPEDNYHKEKS  +RKRSFNDMNGKEE+T+ADGAGE+LAV
Sbjct: 121 PQNGDMPPVKETEHEKGKGKEPEDNYHKEKSQPLRKRSFNDMNGKEESTIADGAGESLAV 180

Query: 181 PEEHSRSP 189
           PEEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of Lsi11G006260 vs. NCBI nr
Match: XP_008453632.1 (PREDICTED: uncharacterized protein LOC103494285 [Cucumis melo] >XP_008453640.1 PREDICTED: uncharacterized protein LOC103494285 [Cucumis melo] >KAA0048063.1 uncharacterized protein E6C27_scaffold385G001320 [Cucumis melo var. makuwa] >TYJ96473.1 uncharacterized protein E5676_scaffold546G001180 [Cucumis melo var. makuwa])

HSP 1 Score: 340.5 bits (872), Expect = 9.2e-90
Identity = 179/188 (95.21%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLF 
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFL 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+  VKETE EKGKGKEPEDNYHKEKS  VRKRSFNDMNGKEEN VADGAGE+LAV
Sbjct: 121 PQNGDMPPVKETELEKGKGKEPEDNYHKEKSQPVRKRSFNDMNGKEENAVADGAGESLAV 180

Query: 181 PEEHSRSP 189
           PEEHSRSP
Sbjct: 181 PEEHSRSP 188

[Close]

BLAST of Lsi11G006260 vs. NCBI nr
Match: XP_022156356.1 (uncharacterized protein LOC111023270 [Momordica charantia] >XP_022156357.1 uncharacterized protein LOC111023270 [Momordica charantia] >XP_022156358.1 uncharacterized protein LOC111023270 [Momordica charantia] >XP_022156359.1 uncharacterized protein LOC111023270 [Momordica charantia])

HSP 1 Score: 336.3 bits (861), Expect = 1.7e-88
Identity = 174/188 (92.55%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSS+ITPEDVL+SLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSIITPEDVLQSLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFD+LRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSG+EPPLFP
Sbjct: 61  QTKRELFDSLRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGREPPLFP 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           PQNGD+A VKE ENEKGKGKEPED+Y KEKSHSVRKRSFNDMNG+EEN VA+GAGENLA+
Sbjct: 121 PQNGDMASVKEPENEKGKGKEPEDDYLKEKSHSVRKRSFNDMNGREENNVANGAGENLAL 180

Query: 181 PEEHSRSP 189
           PEE SRSP
Sbjct: 181 PEELSRSP 188

[Close]

BLAST of Lsi11G006260 vs. NCBI nr
Match: XP_022938214.1 (uncharacterized protein LOC111444361 [Cucurbita moschata] >KAG6586223.1 hypothetical protein SDJN03_18956, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 334.0 bits (855), Expect = 8.6e-88
Identity = 174/188 (92.55%), Postives = 178/188 (94.68%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK
Sbjct: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELEAPVLEKASKSVWELILDN GLGKEINDTVEKVFCRLSGKEPPLFP
Sbjct: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNGGLGKEINDTVEKVFCRLSGKEPPLFP 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGKEENTVADGAGENLAV 180
           P+NGDI  VKETEN+KGKGKEPED+YHKEKS  VRKRSF DMNGK+EN V DGAGENLA 
Sbjct: 121 PENGDIPSVKETENDKGKGKEPEDDYHKEKSQPVRKRSFIDMNGKDENNVVDGAGENLAA 180

Query: 181 PEEHSRSP 189
            EEHSRSP
Sbjct: 181 TEEHSRSP 188

[Close]

BLAST of Lsi11G006260 vs. TAIR 10
Match: AT1G56420.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-51
Identity = 117/192 (60.94%), Postives = 141/192 (73.44%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           MSSSSVI PEDVLE LMNDGTID+LRL+IINQLKANEELK+TTIKM E+SKVLNTPGAEK
Sbjct: 1   MSSSSVIKPEDVLEHLMNDGTIDALRLRIINQLKANEELKSTTIKMAEESKVLNTPGAEK 60

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLSGKEPPLFP 120
           QTKRELFDALRQELE PVLEKASKSVW+LI++ +GLGKEIN+TVE+VFC LSG+EPP + 
Sbjct: 61  QTKRELFDALRQELEGPVLEKASKSVWDLIIEKDGLGKEINETVERVFCHLSGQEPPFYS 120

Query: 121 PQNGDIALVKETENEKGKGKEPEDNYHKEKSHSVRKRSFNDMNGK----EENTVADGAGE 180
             N     V++T  E  K  E +D+         +KRS +++N      E  T     G+
Sbjct: 121 SSN-----VEKTPMEIDKETEVKDS----SKTKPKKRSLSEVNSSEGIDEVATTKKKQGD 180

Query: 181 NLAVPEEHSRSP 189
           +  V  E  ++P
Sbjct: 181 SSTVTLESRKTP 183

[Close]

BLAST of Lsi11G006260 vs. TAIR 10
Match: AT1G12530.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56420.1); Has 54 Blast hits to 53 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-16
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 0


Query: 1   MSSSSVITPEDVLESLMNDGTIDSLRLKIINQLKANEELKNTTIKMVEQSKVLNTPGAEK 60
           M  +  I+ E+V+E L +DG  D LRLKII +LK NE+L+N  I +V++S  L   GA+ 
Sbjct: 2   MGMARKISKEEVVEKLKDDGDFDRLRLKIIRRLKENEDLRNNMISVVKESTSLKRHGAQN 61

Query: 61  QTKRELFDALRQELEAPVLEKASKSVWELILDNNGLGKEINDTVEKVFCRLS 113
              R+L DA+ +E+ + +L + S  +W +I   +G+  EI +TV+ V+  LS
Sbjct: 62  MKTRQLSDAIFEEVGSKMLSQLSDGLWGIIRSEDGMKNEIRETVQSVYATLS 113

The following BLAST results are available for this feature:

BLAST of Lsi11G006260 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G006260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BWQ6	4.5e-90	95.21	uncharacterized protein LOC103494285 OS=Cucumis melo OX=3656 GN=LOC103494285 PE=...	[more]
A0A5D3BAZ9	4.5e-90	95.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LGM0	4.5e-90	94.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G033970 PE=4 SV=1	[more]
A0A6J1DQE8	8.4e-89	92.55	uncharacterized protein LOC111023270 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1FDE9	4.2e-88	92.55	uncharacterized protein LOC111444361 OS=Cucurbita moschata OX=3662 GN=LOC1114443...	[more]

BLAST of Lsi11G006260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890481.1	2.6e-92	95.74	uncharacterized protein LOC120080024 isoform X1 [Benincasa hispida] >XP_03889048...	[more]
XP_004144753.1	9.2e-90	94.15	uncharacterized protein LOC101204620 [Cucumis sativus] >KGN60993.1 hypothetical ...	[more]
XP_008453632.1	9.2e-90	95.21	PREDICTED: uncharacterized protein LOC103494285 [Cucumis melo] >XP_008453640.1 P...	[more]
XP_022156356.1	1.7e-88	92.55	uncharacterized protein LOC111023270 [Momordica charantia] >XP_022156357.1 uncha...	[more]
XP_022938214.1	8.6e-88	92.55	uncharacterized protein LOC111444361 [Cucurbita moschata] >KAG6586223.1 hypothet...	[more]

BLAST of Lsi11G006260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G56420.1	1.1e-51	60.94	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G12530.1	1.4e-16	39.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..188
None	No IPR available	PANTHER	PTHR34356	ANTIGENIC HEAT-STABLE PROTEIN	coord: 1..186
None	No IPR available	PANTHER	PTHR34356:SF1	ANTIGENIC HEAT-STABLE PROTEIN	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G006260.1	Lsi11G006260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006415	translational termination
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0016149	translation release factor activity, codon specific