Lsi11G006110 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G006110
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPre-mRNA-splicing factor 38
Locationchr11: 6513770 .. 6521967 (-)
RNA-Seq ExpressionLsi11G006110
SyntenyLsi11G006110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAACTCGTAATTTAATCTAATTAAAAATAGCTTTAGGGCATGGAATTAAATATAATTGGAGCATTACCCCGAGTTTTCAGTTCTTTTCTCCCACTCGTAATTCGTATGTCGTATGACTCATTTCGCCATCCTCACCCCGTCCGGCGTCAGACTTAGGGTTCCGATCAATCTCCTCCGTCGATTTCCGTGGACCGACACGGATATCGCTGTTCTATAGCCGGTAGTTATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATCAGGGGAACGAACCCGCAGAATCTGGTGGAGAAGATTCTTCGCTCAAAGATCTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTGACGGCGGAGACATTGGTGGATAAAGCCATGGAGCTCGATCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCTACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTAATCGAGTTCATCAAGAACGAAGACTACAAGTAATTGTTCTTGTCATTTTGGTTTTCATTAAACAGAACTCTGAATTTTGGTTACCTAGAAGCGTTTAGGAGTAGGGTTAATTGGAAGGAATATTTCAATTGTTTGTTTTATGGAGTTTAAAGAAACCATGGTTTTGGGAACTTACTGCGAAACTTATGAAAACTAAATACTTGTAGGTGAGAGAGTTTTTGCAGTTGATCAGTGAATCGGAAATTAGGATAGTGAATAAGTTTAGAATTTCTTGATGGGCACCCTCTTTGTTAATTGTGATTTTATAAGCAAAAGAAATGGATGGACTATTAAGCTTATGGTTGAGCTAACTGAAGTACATTGCAAATGCGTTCTGTATCTCGTGGTTTTCTATCGTTCTTAAAGTTGTTGCTCACTCGCCTTAGCTTGAGATGATTGCTTTGCTTTTATACTGTATGGTCTTGAAAATGCCTTTTCTGCTTGGATCTTAATCATTTGTCTGTCAAATAATAACTACGTTGTCTTAGTGAAAACTCTCTCTCTCGTAATTTCCTGAGAATGGTATGTTTGTTTTCTAGCCTTTTTCAAGCATACTTTTGAAGTTACATTTTTCTTTTGTGACATAGATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAACCTCTGTACAATGACTATCGGAAATTGAGGAGAAAATTACCTGATGGATGTAAGCTTCTGGGCCTTTTTTTAAAAAACTTTATCTTACTAGTTATTAGGAAAACTAATTGATTTTACATTCTTGTTACTATAATGTATTTCTAGTTATATCTCCTCTCTAAAAAGAAGTTACAAACTCGATCTTATTTTTATTAGGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGACATAGCGCTGCCACGTGTCAAAAAGAGGTATGGTACTGATTGCTCATGTGGCTATTTTCAGTCGATTTATTTTTCAAGCGGAAGTTGATAATCTATTATAAAAATCAGGGCATTAGGAGAAATATGCATTATTCATTGTTTGACAAACAGAAGTACATGGATCACAAGTTCTACATATTGCCAGTGTTCAGTTTTGAATGTGATGCTTCTTTTGAAGTAACCTAAATAAGATACACTTTGTAATGGCAGATGGACCCTTGAATCTTCTGGATCATTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGAGGTTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGTGAAGGTATAAACACATTCTCTGTTTGCATGCAAAAGAATCTAGTCTGCATTTTCTTATTCTTGGCAACCTGTTTGATACCTTGCATCTGCAGAATTATTATCGAGGGAGGAGTCCTGTGCGGGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGTCTGATCCCCCGTCTTCTGTTTTTGTTTTTTTCATTTCTTCTCCCTCCTTTGCCTAAACATTCACAAATTCAGAAAGAGCTTCACAGTTGCATGGCATCCATAAAAATGAGAGGCAAGGGAGGGTGTCATTATTTGATATCTCCACTCTATTAGTTGCCTTCATTTTGTAAATCACATAATTTTTTGTTGAATGTGAATAATGATGTCCGAGGCCAAAATCAACAATCTTGAAGTCAAAATTTGTGTTTTACGTTTTACTCTAGTCTTTTTGTTGCCAATTCAATTCTCTTAGTAGAGTTGGTGTTGATGAACGTTGAACAATTAGATTGAACAAAATTAGGAGATGAATGGGAGAATGGATGTCGTGGTGTGGCATGAAGTTGTTAGCTTGGTCTGGAAAAATCCAAACTCTTGCCTATCTTGGGATTGGGTTTAGTTGCTTCAACCTTCTAAGATCTTTGCCCTTTTGACCACCATGTGTAGGTCAAGCTGAGTCCTAAGTTGGTTGGTTTTTGACCATGCTACTTCTGTGAGTGTTACGTTGATTTTGGTGTTTGACAACATGCCTTCTTTGAGAACAAAGATATTATTTTCTTTTTGTTTCTGACATGATAGGTTATTTAAATAAAATGAATCCTGATTTGATCTGGCTCTTTTTAAACTGATTTTGATGCACTCTGGGGAAAAAATCAGTCTTGTTTTGTTTTGTTCTTTTTTTTTTTCTAAATTACTTAGCTGGAAGCAGTTGGATCTGTTATTCTTGGATTACTATATCCTTACTGGTCAATTAACATTCGCATGTTTTTCTGTCACAACCATGGTATTTCAAGCCACTGGTTGCTTGCTGCTTCCTACAGTAAATTCTCAAGATCCTGCCAGGTTTCTCTGTACTGACAGTGTGCAGCTGAGAAGTATGATGGATCGTACATATATTTGTCATAGTGATCTCATTTTTACTTTTTACCACATCGAAAAATTATCTTTGGTGACTATAGCTGAGAACTACTCATATGCTTTTCCATTTATATTTTCCTTTAGCTTTTTGGTGAAAAAGCTAATTTGATTCTTTTTCCAGGCACCACCGAGTTTATATATGGTGTTCTTCCTAAACGTTAAGCCTTTCTGCCACTTCTGCTTTTTCTATGAGATTACTTGTTTATGCATTCAGCATAGGATAATACATTATTCTCCATCTTTTGATCCTGAAACTCTTGTCTATGATGCGTTACTTAGATGCATTTATGAGCTGTCTTACTACATGCATTGAGGGAAAAATATTGATCTCTCGACACACCACACTTTCTTTTGTTTAATCACAGGGACCGAGACAATGATAGAGACCGGGACTATGACAGAGACTATGATAGAGATCGGGGACGTGGAAGAGATAGAGATAGAGATCGAGAAAGGGATCGGGATCGGGATAGAGATCGAGATCGAGATCGGGACAGGGACAGAGATAGGGATAGGGACAGGGATCGCTATCGCCTGAGGGATGAGAAGGAATATGGAAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGACAGAGATCGTGGTAGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCCTTAGTCCTAGAAGAAGGGATGGAGCGGAGGATAGAGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAGGAAGCTGGAGCAGGCGAGGAAGATCCCGAGATCGCCGAATGGAATAGGATTCGTGCATCTCTTGGATTGGCACCTCTCAAGTAGAGGGTTTTCTCTTCTTCAGTTTGATCTATATGTGAACCTGTTTCATAAGTGAAGTTGGAGCTTGTAATCCATATCAGTTTGAGTTTTGGGGTCCTTAGAGAGGTTTAAGGTTCTGATTTCTGTATAATATTTCTTTGCTGCTATGCTATTACAGTCTTTTTGTTGAATGATAGCATAAATCAAATTTGGAAATATTGCAGTGCCTGCTTCTCCTTTACTTGGATTCTAAAAATTCATTTACATTAACACACTTCTGGGTTTGGGTAGTTATATTCAATATCGAGTTTTGGATTCTTGTTAATACGAGTTTGAAATGTATTTTAATGATATTTCTTACATAGAATTATGGTAACATTTTCTACTTGCATTTGATTATTTATATGGTTTTAAAATGCCAAACTTGTCATCTAACTAACTACTTCATGACAATTGTGGTACCATTTGAGTCGCTGTTTCTAAACTCCACATTTTAACTCTCGAGTCTTGAGGTTGATAACATTTTAATTTTTCATTAATTAAAGAAAGATGACGTGACATTCTATTTTAATAATTTTTTTTAAAGAGTTTAGAAGTATTTTTGCAACAAGGTTTTATAGTTTTTATTCATATATTTACAGTAAAGGTATATTTGAACTTTTCTTTAAGGTTCGAGTATGTTTTGAACTTTTGAAAGTTTAAGGATATATTTAAAGCAAAACAATAAAAGTTTCCATCCAAAATTAACAGTGAGAGTATTTTTTAAAGTTCAAGGGTGTTTTTGAAACTTTTGAAAGTTTAAGGATATTTTTGACACAAAGTGCAAAGTTCAATGATATTTTGTATAATTTAGCCTGATTTATTCGATCTAGTGAGAAAATCAAACTTTTGACTTGGAGATTGATGGTACAAATTTTATTCATTTTAGACTTATTTTGAAGTTAGTTAGATGCAACTACAAATGTATTTTTAAATAGATACTCCTTACTAAATTTGACCTAAATCATTGTTTCACTACTATAGAAATTATCGATGTATGTTTTAGTCTTTAAATTTGTCAGATTAAGGGAGCGTTTGGTCCACTGAGTGGAGTTGATAAGTCTGGAATTAATACGTTGCAGTTAGTAAGTTTGTGTTAGGGTGTAGAGTCATAAGATGAAGTTTTTTTATAATTGTGAAAAGTAGATTACGAGGGGAAGATGAAGTTCTTCAATAAATGTAAAAGATAGAAAAAGATGGAAAGATAGAGTTACTCGACAAATATGCAAACTTTACAAAAAGAATAGAAAAATATGGGATGATGGAGTTACTCAATAAATGTGCAATCTTCAACAGTATTTACTAAAAGTTAGTGGGCCAAACCACCCTTGAGAGTCTAAAAACTAGAGACAATTGCAGATATAGCAATTAGATTCAAAATATTAACACATATAACAATATTTAAAAAAAATTGTAAATATAACAAAGTCTATTGGTGATAGTCTTTTATCGCTATAGACTTTTATGATCTAGGTGGTCTATCAACAATTGAAGTCTATCACAGATAGATTTTGCTATATTTACAATTTAAAAAAAATATTACTATATACTTAGTTATTATGTCTAAAATTACTACTTATTACGATTACCATAAACTATCATATATTGCAATATTGAGCCCAGCCTAAAAATTTGCTGAAGGCCCAACAATGTTAATTCTGTCACATATAAATAGCTGATGGATATTTGCACGTAGATGCACCGTATGAGTCTACGACGGACCACCGCCGTCGCCGTCGTGCTCCGCCTTCCTATCGGCATCTCAGCCTCTCGGTTTTTCGCTTTTCACTACTTGCAACAAGCTTTTTGTTCGAAAACGAGTTCGATTGCTCAGAACTTCACCAAGCATTAAGACTTTCCCCGGTATTCTCATTCCTTTCATGTGTATCGTCTTCTAGCTGCTGTTGAACTACATCTCTTGATTGATCGATGAAAAAAATGCTTTTCGTCTAGCTAATAATCATAAATGTCTGAATATTTATCATCCGGAGAGTTCGTGTTTACCATTTCCTCTCTGGCTAGAGTTTCTAGAGCGAGTAGTGGCGTTTTCTAATTCCTGTTTGAAATCCACGAGGTTCTTGTTATTAGTTATCCTATAATTCAAAATATCTTAGTTTATAACTGTCATTTCTCATTACATATGTTTATGAGATTCTAGAGATTGTTTAAGTTAGCCTGATTTAGTTCGCCAGTAGATTTGAGCTTCAAGGAAATAGAATAATCTTAGTACGCATTATCGTCCGACATCTGGAACGCTTTGGCTATTTCTTTATTTGACTGTGAGTGCTGTTAGCCAGTTAGTCGTCCACCATGAAAGTTGATATTATTAATTACAAAGAATCCATATGTGGAAGCTGGAAGGTAATGAAAAAGCATTATGTTATAATTGGGATCTTTAATCACTGAGGAGAGATAGAGGCCATCCACTTTGAGAATTGGAAGCACCCAAAATTCAAAAGGCAACTTCGTACCAAAAAGATGTCTAAAAAAAGAAAGTGGGATACGGTGCATAGTTCTTTTGACAGCTGTTGGCTCCAATAACTTTGCCTTGTACAACAACCACCTGATATCAAGAATAGAAGATCAGGCAAAAGGTTCAAAAGTGAAAATAGAAGACTTGATCCATTGGAGAATTCTTTATCAGTTTGTCTTTAGTTTCTTATTGTGCTAATATCTTGCAGCTGTATCTTAGAATAAAATTCCAGCAACAAAATAAAGAACACAAGAATTTACGTGGTAAACTCCTAACTTTGAGAAAAAACACTGCCCGTTAGAAAGAAATCCACTATGTGAAAAATTGTTACAATCACACAGAATAATTCTCTTCTCCATCCCATTTACAAAGCACTATCTCAAGGCTTTTGTACCACTTACACTTTTTTTTCCACTCTTAACCTAGAGAATACATAAAGAGAATTTAACTATAGTTAGCACCCACGCTTAAAGTGTTTCTAACTTGAATGAATTGAAACCAAAGTCTTAGGCTCCTTTTATAGTGTTTGGAGTCCATCACTTTTTTGAACATTTTTAACACGGGACAACCACTCTTCTAACATTATGCCAAAACTCAACAGGTATGTCAATAGATATAATGAAATATTCAACTAGATTCTTTAGGCATATTGATATTGTAATTATCAGTTTAGTTTTTTTCTTTTGGATTGAGGTCTTTTGTGTACTTGGGCTTACTTTTTTTATGCCCTTGTATATTCTGCAATATATCTCAGCAATGAAAGCTTTGTTTCTTATAAAAAATTGATATATTGATATTCAACCTGGTGCTGGAAAATTTCTTGTTTTCTCTTTGCTGCTTGCTTTTCGTTGATGTTAGGACAAGAAATAGTAATAAATAAAGATGGGAAGGAAGCAAGGAAGAGGAGTAAGGAGAGGAGAATTCCCTCGAGGTCATATAGCTTGATTAGTTTTAAAATCTAGTGATCAGCTTCCCACTTGGTGCATCTTTTGATAAGTCTGATTTTAATATCTCCTCATGATTAAGCTGTATATATTTACTTTGTGCACTGACATTTGTTTTGCCATGCGTGTTATAAAGAGAATTATATTTCATAAAAGAGAACCCACTAAGATTGGATGGCACAGTCCATTGGTTTCCGTACTTTTTCGTTATTCTCCAACGTTGGCTATTAATTTATTTATGCATAGGCAACTTTAAGCTTTCTATAAATAGACATTTGGCTCTGAGCATACTGTAATTCTCTATTGGAATCTCTCTACTCCTTCCTAAATGAAGAATATCAAGAAGACCATGTTTTTTATATTTGCTCTCTTTTTTCAAGTATCTAAAGCAATAGCTTTTCCGGCTTGTTCCAAATGTGGAAATCTTGAAGTTCCTTATCCGCTTAGCACAAACGACAACTGTGGAGACTCTAGGTATAAAGTTTATTGCCATGATGATATTCTTCAGTTCAAGTCAAGTGAAGGGTTTTACTATAATATTCATTCCATTGATCCTAATGCTTATAAGCTTATTATAAGCCCACCCCAAATTCAGAAAGAGAGTTGTTACTCTTCTGATCTCTCTTTAGGAGGTTTAAGGCTAGATGAAAATTTGCCTTTCAACGTTTCTACACACAATACTGTCATGCTGTTCAATTGCTCAGATAATCTTATAAACTCGCCCCTGAATTGTTCAATAAGCAGCCCTTGCAGGCAGTTTGAGGAGAAAATGAAGGAAGCAAGTGGGTGCAAGAACACCCTTTGCTGTACGTACTTGAAAGATTCAGCCATGACTGCCCACATGATAAGAGTCAGAATTGGAGGGTGCACTGCTTATACTTCTGTGGTCAATTTTAAGCCTGGCGATTCATTTGAAACCTGGAATTATGGAATTGAATTGCAATGGATCCCCCCAAAC

mRNA sequence

TTTAACTCGTAATTTAATCTAATTAAAAATAGCTTTAGGGCATGGAATTAAATATAATTGGAGCATTACCCCGAGTTTTCAGTTCTTTTCTCCCACTCGTAATTCGTATGTCGTATGACTCATTTCGCCATCCTCACCCCGTCCGGCGTCAGACTTAGGGTTCCGATCAATCTCCTCCGTCGATTTCCGTGGACCGACACGGATATCGCTGTTCTATAGCCGGTAGTTATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATCAGGGGAACGAACCCGCAGAATCTGGTGGAGAAGATTCTTCGCTCAAAGATCTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTGACGGCGGAGACATTGGTGGATAAAGCCATGGAGCTCGATCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCTACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTAATCGAGTTCATCAAGAACGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAACCTCTGTACAATGACTATCGGAAATTGAGGAGAAAATTACCTGATGGATGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGACATAGCGCTGCCACGTGTCAAAAAGAGATGGACCCTTGAATCTTCTGGATCATTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGAGGTTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGTGAAGAATTATTATCGAGGGAGGAGTCCTGTGCGGGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGCTGGAAGCAGTTGGATCTGTTATTCTTGGATTACTATATCCTTACTGGTCAATTAACATTCGCATGTTTTTCTGTCACAACCATGGTATTTCAAGCCACTGGTTGCTTGCTGCTTCCTACAGTAAATTCTCAAGATCCTGCCAGGGACCGAGACAATGATAGAGACCGGGACTATGACAGAGACTATGATAGAGATCGGGGACGTGGAAGAGATAGAGATAGAGATCGAGAAAGGGATCGGGATCGGGATAGAGATCGAGATCGAGATCGGGACAGGGACAGAGATAGGGATAGGGACAGGGATCGCTATCGCCTGAGGGATGAGAAGGAATATGGAAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGACAGAGATCGTGGTAGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCCTTAGTCCTAGAAGAAGGGATGGAGCGGAGGATAGAGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAGGAAGCTGGAGCAGGCGAGGAAGATCCCGAGATCGCCGAATGGAATAGGATTCCTGATGGATATTTGCACGTAGATGCACCGTATGAGTCTACGACGGACCACCGCCGTCGCCGTCGTGCTCCGCCTTCCTATCGGCATCTCAGCCTCTCGGTTTTTCGCTTTTCACTACTTGCAACAAGCTTTTTGTTCGAAAACGAGTTCGATTGCTCAGAACTTCACCAAGCATTAAGACTTTCCCCGAGGCCATCCACTTTGAGAATTGGAAGCACCCAAAATTCAAAAGGCAACTTCGTACCAAAAAGATGTCTAAAAAAAGAAAGTGGGATACGGTGCATAGTTCTTTTGACAGCTGTTGGCTCCAATAACTTTGCCTTGTACAACAACCACCTGATATCAAGAATAGAAGATCAGGCAAAAGGTTCAAAAGTGAAAATAGAAGACTTGATCCATTGGAGAATTCTTTATCAGTTTAGAATTATATTTCATAAAAGAGAACCCACTAAGATTGGATGGCACAGTCCATTGGTTTCCAATATCAAGAAGACCATGTTTTTTATATTTGCTCTCTTTTTTCAAGTATCTAAAGCAATAGCTTTTCCGGCTTGTTCCAAATGTGGAAATCTTGAAGTTCCTTATCCGCTTAGCACAAACGACAACTGTGGAGACTCTAGGTATAAAGTTTATTGCCATGATGATATTCTTCAGTTCAAGTCAAGTGAAGGGTTTTACTATAATATTCATTCCATTGATCCTAATGCTTATAAGCTTATTATAAGCCCACCCCAAATTCAGAAAGAGAGTTGTTACTCTTCTGATCTCTCTTTAGGAGGTTTAAGGCTAGATGAAAATTTGCCTTTCAACGTTTCTACACACAATACTGTCATGCTGTTCAATTGCTCAGATAATCTTATAAACTCGCCCCTGAATTGTTCAATAAGCAGCCCTTGCAGGCAGTTTGAGGAGAAAATGAAGGAAGCAAGTGGGTGCAAGAACACCCTTTGCTGTACGTACTTGAAAGATTCAGCCATGACTGCCCACATGATAAGAGTCAGAATTGGAGGGTGCACTGCTTATACTTCTGTGGTCAATTTTAAGCCTGGCGATTCATTTGAAACCTGGAATTATGGAATTGAATTGCAATGGATCCCCCCAAAC

Coding sequence (CDS)

ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATCAGGGGAACGAACCCGCAGAATCTGGTGGAGAAGATTCTTCGCTCAAAGATCTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTGACGGCGGAGACATTGGTGGATAAAGCCATGGAGCTCGATCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCTACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTAATCGAGTTCATCAAGAACGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAACCTCTGTACAATGACTATCGGAAATTGAGGAGAAAATTACCTGATGGATGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGACATAGCGCTGCCACGTGTCAAAAAGAGATGGACCCTTGAATCTTCTGGATCATTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGAGGTTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGTGAAGAATTATTATCGAGGGAGGAGTCCTGTGCGGGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGCTGGAAGCAGTTGGATCTGTTATTCTTGGATTACTATATCCTTACTGGTCAATTAACATTCGCATGTTTTTCTGTCACAACCATGGTATTTCAAGCCACTGGTTGCTTGCTGCTTCCTACAGTAAATTCTCAAGATCCTGCCAGGGACCGAGACAATGATAGAGACCGGGACTATGACAGAGACTATGATAGAGATCGGGGACGTGGAAGAGATAGAGATAGAGATCGAGAAAGGGATCGGGATCGGGATAGAGATCGAGATCGAGATCGGGACAGGGACAGAGATAGGGATAGGGACAGGGATCGCTATCGCCTGAGGGATGAGAAGGAATATGGAAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGACAGAGATCGTGGTAGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCCTTAGTCCTAGAAGAAGGGATGGAGCGGAGGATAGAGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAGGAAGCTGGAGCAGGCGAGGAAGATCCCGAGATCGCCGAATGGAATAGGATTCCTGATGGATATTTGCACGTAGATGCACCGTATGAGTCTACGACGGACCACCGCCGTCGCCGTCGTGCTCCGCCTTCCTATCGGCATCTCAGCCTCTCGGTTTTTCGCTTTTCACTACTTGCAACAAGCTTTTTGTTCGAAAACGAGTTCGATTGCTCAGAACTTCACCAAGCATTAAGACTTTCCCCGAGGCCATCCACTTTGAGAATTGGAAGCACCCAAAATTCAAAAGGCAACTTCGTACCAAAAAGATGTCTAAAAAAAGAAAGTGGGATACGGTGCATAGTTCTTTTGACAGCTGTTGGCTCCAATAACTTTGCCTTGTACAACAACCACCTGATATCAAGAATAGAAGATCAGGCAAAAGGTTCAAAAGTGAAAATAGAAGACTTGATCCATTGGAGAATTCTTTATCAGTTTAGAATTATATTTCATAAAAGAGAACCCACTAAGATTGGATGGCACAGTCCATTGGTTTCCAATATCAAGAAGACCATGTTTTTTATATTTGCTCTCTTTTTTCAAGTATCTAAAGCAATAGCTTTTCCGGCTTGTTCCAAATGTGGAAATCTTGAAGTTCCTTATCCGCTTAGCACAAACGACAACTGTGGAGACTCTAGGTATAAAGTTTATTGCCATGATGATATTCTTCAGTTCAAGTCAAGTGAAGGGTTTTACTATAATATTCATTCCATTGATCCTAATGCTTATAAGCTTATTATAAGCCCACCCCAAATTCAGAAAGAGAGTTGTTACTCTTCTGATCTCTCTTTAGGAGGTTTAAGGCTAGATGAAAATTTGCCTTTCAACGTTTCTACACACAATACTGTCATGCTGTTCAATTGCTCAGATAATCTTATAAACTCGCCCCTGAATTGTTCAATAAGCAGCCCTTGCAGGCAGTTTGAGGAGAAAATGAAGGAAGCAAGTGGGTGCAAGAACACCCTTTGCTGTACGTACTTGAAAGATTCAGCCATGACTGCCCACATGATAAGAGTCAGAATTGGAGGGTGCACTGCTTATACTTCTGTGGTCAATTTTAAGCCTGGCGATTCATTTGAAACCTGGAATTATGGAATTGAATTGCAATGGATCCCCCCAAAC

Protein sequence

MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPARKSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQLDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIPDGYLHVDAPYESTTDHRRRRRAPPSYRHLSLSVFRFSLLATSFLFENEFDCSELHQALRLSPRPSTLRIGSTQNSKGNFVPKRCLKKESGIRCIVLLTAVGSNNFALYNNHLISRIEDQAKGSKVKIEDLIHWRILYQFRIIFHKREPTKIGWHSPLVSNIKKTMFFIFALFFQVSKAIAFPACSKCGNLEVPYPLSTNDNCGDSRYKVYCHDDILQFKSSEGFYYNIHSIDPNAYKLIISPPQIQKESCYSSDLSLGGLRLDENLPFNVSTHNTVMLFNCSDNLINSPLNCSISSPCRQFEEKMKEASGCKNTLCCTYLKDSAMTAHMIRVRIGGCTAYTSVVNFKPGDSFETWNYGIELQWIPPN
Homology
[Close]
BLAST of Lsi11G006110 vs. ExPASy Swiss-Prot
Match: Q8LB54 (Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.0e-120
Identity = 268/440 (60.91%), Postives = 303/440 (68.86%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK+R+KL DG FSL+HVDEVI+ELLTKDYSCDIA+PR+KKRWTLE +G L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KS LEDDFEEEEEKEE E I D  ED++      R +SP RER+RDRDRRRDSHRH    
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMD----QRRKSPERERERDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                   +D   DRD D DRD+DRDY+
Sbjct: 241 ----------------------------------------RDRDYDRDYDMDRDHDRDYE 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
           R+RG GRDRDR+R+RD  R+RDRDR+R RDR+RDR                         
Sbjct: 301 RERGHGRDRDRERDRDHYRERDRDRERGRDRERDR------------------------- 344

Query: 361 RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKKE 420
                RDR RRRS SRSR           RKRH          D   DREEPKKKKEKKE
Sbjct: 361 -----RDRARRRSRSRSRD----------RKRH--------ETDDVRDREEPKKKKEKKE 344

Query: 421 K-KEAGAGEEDPEIAEWNRI 440
           K KE G    +PEIAE NR+
Sbjct: 421 KMKEDGTDHPNPEIAEMNRL 344

[Close]
BLAST of Lsi11G006110 vs. ExPASy Swiss-Prot
Match: Q7JVL3 (Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.3e-66
Identity = 180/369 (48.78%), Postives = 233/369 (63.14%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   AK++ GTNPQ L+EKI+RS+IY + YWKEQCF LTAE LVDKAMEL  +GG 
Sbjct: 1   MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPT F+CL +KMLQIQPEK+IV+EFIKNE++KYVR LGAFYLRLTG  +D Y+YL
Sbjct: 61  YGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGAALDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLY D RKLRR+   G F + ++DE IDELL  D  CDI LPR++KR  LE +  +  +
Sbjct: 121 EPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSILEENNEIEPK 180

Query: 181 KSALEDDFEEE--EEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSW 240
            S L++D ++E   ++E+ +  N   E+   V+   R RS  R R R+R+RR      + 
Sbjct: 181 VSVLDEDLDDELPSDEEKADETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSAR 240

Query: 241 KQLDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRD-YDR 300
            +      DYY                               +D  R R+  R+RD ++ 
Sbjct: 241 SR------DYY----------------------------DELEDYDRQRNRVRNRDTHNE 300

Query: 301 DYDRDRGRGRDRDRDRER-DRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDRER 360
           DYDR +  GR  DR+RER DRD  R+R+RD DRDR RDR+R+R     E++ GR   RER
Sbjct: 301 DYDRRQNNGR-HDRERERQDRDSIRERERDGDRDR-RDRERER-----ERDRGRHDQRER 328

Query: 361 EGR-ERERR 365
           + R ER+RR
Sbjct: 361 DSRGERDRR 328

[Close]
BLAST of Lsi11G006110 vs. ExPASy Swiss-Prot
Match: Q6DHU4 (Pre-mRNA-splicing factor 38A OS=Danio rerio OX=7955 GN=prpf38a PE=2 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.5e-59
Identity = 164/372 (44.09%), Postives = 212/372 (56.99%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A S+ GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDANSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT VD Y+YL
Sbjct: 61  YGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR  LE +  L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDPR 180

Query: 181 KSALEDDFEE----EEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRH 240
            SALE+D +E    EEE +E E        + H ++Y         RD DR RR  S R+
Sbjct: 181 ISALEEDLDEVETSEEEDDEDEKPERMQSPEPHRRSY---------RDMDRPRRSPSPRY 240

Query: 241 SWKQLDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYD 300
              +                                   P   S+ P R   + R     
Sbjct: 241 RRSR----------------------------------SPRRRSRSPKRRSPSPR----- 300

Query: 301 RDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRD-RDRE 360
                     R+RDRDR R +   R R R R+R R R +    +R    + + +    R 
Sbjct: 301 ----------RERDRDRHRSKSPRRHRSRSRER-RHRSKSPGHHRSHRHRSHSKSPESRS 313

Query: 361 REGRERERRDRD 368
           ++  +R RR  +
Sbjct: 361 KKSHKRSRRGNE 313

[Close]
BLAST of Lsi11G006110 vs. ExPASy Swiss-Prot
Match: Q0P5I6 (Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.6e-59
Identity = 162/367 (44.14%), Postives = 212/367 (57.77%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR+ LE +  L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
            SALE+D ++ E  EE E  ++ LE         R  SP            D  R S++ 
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLE---------RVPSP------------DHRRRSYRD 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
           LD                         + +  L      S+ P R     R R   R   
Sbjct: 241 LDKP-----------------------RRSPTLRYRRSRSRSPRR-----RSRSPKR--- 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
             R     R+R R +   R R R RDR R R R +    +R    + + +  +R ++  +
Sbjct: 301 --RSPSPRRERHRSKSPRRHRSRSRDR-RHRSRSKSPGHHRSHRHRSHSKSPERSKKSHK 312

Query: 361 RERRDRD 368
           + RR  +
Sbjct: 361 KSRRGNE 312

[Close]
BLAST of Lsi11G006110 vs. ExPASy Swiss-Prot
Match: Q8NAV1 (Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.6e-59
Identity = 162/367 (44.14%), Postives = 212/367 (57.77%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR+ LE +  L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
            SALE+D ++ E  EE E  ++ LE         R  SP            D  R S++ 
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLE---------RVPSP------------DHRRRSYRD 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
           LD                         + +  L      S+ P R     R R   R   
Sbjct: 241 LDKP-----------------------RRSPTLRYRRSRSRSPRR-----RSRSPKR--- 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
             R     R+R R +   R R R RDR R R R +    +R    + + +  +R ++  +
Sbjct: 301 --RSPSPRRERHRSKSPRRHRSRSRDR-RHRSRSKSPGHHRSHRHRSHSKSPERSKKSHK 312

Query: 361 RERRDRD 368
           + RR  +
Sbjct: 361 KSRRGNE 312

[Close]
BLAST of Lsi11G006110 vs. ExPASy TrEMBL
Match: A0A1S3BXB0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1)

HSP 1 Score: 658.3 bits (1697), Expect = 4.1e-185
Identity = 374/439 (85.19%), Postives = 380/439 (86.56%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLP R
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD DRDRDYDRDYD
Sbjct: 241 --------------------------------------------RDRDYDRDRDYDRDYD 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
           RDRGRGR+RDRDRE  RDRDR+RDRDRDR+R+RDRDRDRYRLRDEKEYGRDRDREREGRE
Sbjct: 301 RDRGRGRERDRDRE--RDRDRERDRDRDRERERDRDRDRYRLRDEKEYGRDRDREREGRE 360

Query: 361 RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKKE 420
           RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRRRDG EDREEPKKKKEKKE
Sbjct: 361 RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGVEDREEPKKKKEKKE 387

Query: 421 KKEAGAGEEDPEIAEWNRI 440
           KKE GAGEEDPEIAEWNRI
Sbjct: 421 KKEGGAGEEDPEIAEWNRI 387

[Close]
BLAST of Lsi11G006110 vs. ExPASy TrEMBL
Match: A0A6J1FBK8 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 SV=1)

HSP 1 Score: 643.3 bits (1658), Expect = 1.4e-180
Identity = 365/440 (82.95%), Postives = 378/440 (85.91%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRR+L DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRW LES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKE+VEPIND+LED+IH KNYYRGRSPVRE  RD+DRR DSHRH    
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRE--RDKDRRHDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD DRDRDYDRDYD
Sbjct: 241 --------------------------------------------RDRDYDRDRDYDRDYD 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
           RDRGRGR+RDRDR+RDRDRDRDRDRDR RDRDRDRDRDRYRLRD+KEY RDRDREREGRE
Sbjct: 301 RDRGRGRERDRDRDRDRDRDRDRDRDRGRDRDRDRDRDRYRLRDDKEYSRDRDREREGRE 360

Query: 361 RERRDRD-RGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKK 420
           RERRDRD  GRRRSHSRSRSRSKDREDGEYRKRH RSS SPRRRDGAEDR+EPK+KKEKK
Sbjct: 361 RERRDRDHHGRRRSHSRSRSRSKDREDGEYRKRHARSSASPRRRDGAEDRDEPKRKKEKK 390

Query: 421 EKKEAGAGEEDPEIAEWNRI 440
           EKKE GAGEEDPEIAEWNRI
Sbjct: 421 EKKEGGAGEEDPEIAEWNRI 390

[Close]
BLAST of Lsi11G006110 vs. ExPASy TrEMBL
Match: A0A6J1G4M6 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 SV=1)

HSP 1 Score: 642.1 bits (1655), Expect = 3.1e-180
Identity = 369/443 (83.30%), Postives = 377/443 (85.10%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKE+VEPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD +RDRD DRDYD
Sbjct: 241 --------------------------------------------RDRDYERDRDNDRDYD 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREG-- 360
           RDRGRGR+RDRDRE    RDRDRDRDRDRDRDRDRDRDRY LRDEKEYGRDRDREREG  
Sbjct: 301 RDRGRGRERDRDRE----RDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDRDREREGRE 360

Query: 361 --RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKK 420
             RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRRR+GAEDREEPK+KK
Sbjct: 361 RERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAEDREEPKRKK 389

Query: 421 EKKEKKEAGAGEEDPEIAEWNRI 440
           EKKEKK  GAGEEDPEIAEWNRI
Sbjct: 421 EKKEKKGDGAGEEDPEIAEWNRI 389

[Close]
BLAST of Lsi11G006110 vs. ExPASy TrEMBL
Match: A0A6J1HPQ9 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=1)

HSP 1 Score: 630.2 bits (1624), Expect = 1.2e-176
Identity = 360/440 (81.82%), Postives = 373/440 (84.77%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRR+L DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRW LES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKE+VEPIND+LED+IH KNYYRGRSPVRE  RD+DRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRE--RDKDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD DRDRDYDRDYD
Sbjct: 241 --------------------------------------------RDRDYDRDRDYDRDYD 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
           RDRGRGR+RD    RDRDRDRDRDRDRDR RDRDRDRDRYRLRD+KEY RDRD EREGRE
Sbjct: 301 RDRGRGRERD----RDRDRDRDRDRDRDRGRDRDRDRDRYRLRDDKEYSRDRDGEREGRE 360

Query: 361 RERRDRD-RGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKK 420
           RERRDRD  GRRRSHSR+RSRSKDREDGEYRKRH R S SPRRRDGAEDR+EPK+KKEKK
Sbjct: 361 RERRDRDHHGRRRSHSRNRSRSKDREDGEYRKRHARCSASPRRRDGAEDRDEPKRKKEKK 386

Query: 421 EKKEAGAGEEDPEIAEWNRI 440
           EKKE GAGEEDPEIAEWNRI
Sbjct: 421 EKKEGGAGEEDPEIAEWNRI 386

[Close]
BLAST of Lsi11G006110 vs. ExPASy TrEMBL
Match: A0A6J1KGY3 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=1)

HSP 1 Score: 616.7 bits (1589), Expect = 1.4e-172
Identity = 358/443 (80.81%), Postives = 367/443 (82.84%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAK+IRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKNIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+H+DEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHMDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKE+VEPINDSLE DIH KNYYRGRSPVRE  RDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEGDIHEKNYYRGRSPVRE--RDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD +R    DRD D
Sbjct: 241 --------------------------------------------RDRDYER----DRDID 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREG-- 360
           RDRGRGR+RDRDRE        RDRDRDRDRDRDRDRDRY LRDEKEYGRDRDREREG  
Sbjct: 301 RDRGRGRERDRDRE--------RDRDRDRDRDRDRDRDRYHLRDEKEYGRDRDREREGRE 360

Query: 361 --RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKK 420
             RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRRR+G EDREEPK+KK
Sbjct: 361 RERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSVSPRRRNGVEDREEPKRKK 381

Query: 421 EKKEKKEAGAGEEDPEIAEWNRI 440
           EKKEKK  GAGEEDPEIAEWNRI
Sbjct: 421 EKKEKKGDGAGEEDPEIAEWNRI 381

[Close]
BLAST of Lsi11G006110 vs. NCBI nr
Match: XP_031737285.1 (pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein Csa_021262 [Cucumis sativus])

HSP 1 Score: 664.5 bits (1713), Expect = 1.2e-186
Identity = 379/447 (84.79%), Postives = 383/447 (85.68%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSLSHVDEVIDELLTKDYSCD+ALPRVKKRWTLES+GSLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD DRDRDYDRDYD
Sbjct: 241 --------------------------------------------RDRDYDRDRDYDRDYD 300

Query: 301 RDRGRG--------RDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDR 360
           RDRGRG        RDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDR
Sbjct: 301 RDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDR 360

Query: 361 DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEP 420
           DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRRRDGAEDREEP
Sbjct: 361 DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDREEP 397

Query: 421 KKKKEKKEKKEAGAGEEDPEIAEWNRI 440
           KKKKEKKEKKE GAGEEDPEIAEWNRI
Sbjct: 421 KKKKEKKEKKEGGAGEEDPEIAEWNRI 397

[Close]
BLAST of Lsi11G006110 vs. NCBI nr
Match: XP_038890973.1 (pre-mRNA-splicing factor 38 [Benincasa hispida])

HSP 1 Score: 664.1 bits (1712), Expect = 1.6e-186
Identity = 378/443 (85.33%), Postives = 385/443 (86.91%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCF+LSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFALSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD DRDRDYDRDYD
Sbjct: 241 --------------------------------------------RDRDYDRDRDYDRDYD 300

Query: 301 RDRGRGRDRDRDRE----RDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDRER 360
           RDRGRGR+RDRDRE    RDRDRDRDRDRDRDRDRDRDRDRDR+RLRDEKEYGRDRDRER
Sbjct: 301 RDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRDRHRLRDEKEYGRDRDRER 360

Query: 361 EGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKK 420
           EGRERERRDRDRGRRRSHS+SRSRSKDREDGEYRKRH+RSS+SPRRRDGAEDREEP+KKK
Sbjct: 361 EGRERERRDRDRGRRRSHSKSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDREEPRKKK 393

Query: 421 EKKEKKEAGAGEEDPEIAEWNRI 440
           EKKEKKEAGAGEEDPEIAEWNRI
Sbjct: 421 EKKEKKEAGAGEEDPEIAEWNRI 393

[Close]
BLAST of Lsi11G006110 vs. NCBI nr
Match: XP_008453888.1 (PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo])

HSP 1 Score: 658.3 bits (1697), Expect = 8.6e-185
Identity = 374/439 (85.19%), Postives = 380/439 (86.56%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLP R
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD DRDRDYDRDYD
Sbjct: 241 --------------------------------------------RDRDYDRDRDYDRDYD 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
           RDRGRGR+RDRDRE  RDRDR+RDRDRDR+R+RDRDRDRYRLRDEKEYGRDRDREREGRE
Sbjct: 301 RDRGRGRERDRDRE--RDRDRERDRDRDRERERDRDRDRYRLRDEKEYGRDRDREREGRE 360

Query: 361 RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKKE 420
           RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRRRDG EDREEPKKKKEKKE
Sbjct: 361 RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGVEDREEPKKKKEKKE 387

Query: 421 KKEAGAGEEDPEIAEWNRI 440
           KKE GAGEEDPEIAEWNRI
Sbjct: 421 KKEGGAGEEDPEIAEWNRI 387

[Close]
BLAST of Lsi11G006110 vs. NCBI nr
Match: XP_023545282.1 (pre-mRNA-splicing factor 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 650.6 bits (1677), Expect = 1.8e-182
Identity = 371/443 (83.75%), Postives = 379/443 (85.55%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKE+VEPINDSLEDDIH KNYYRGRSPVRERDRDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD +RDRD DRDYD
Sbjct: 241 --------------------------------------------RDRDYERDRDNDRDYD 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREG-- 360
           RDRGRGR+RDRDRE    RDRDRDRDRDRDRDRDRDRDRY LRDEKEYGRDRDREREG  
Sbjct: 301 RDRGRGRERDRDRE----RDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDRDREREGRE 360

Query: 361 --RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKK 420
             RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRRR+GAEDREEPK+KK
Sbjct: 361 RERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAEDREEPKRKK 391

Query: 421 EKKEKKEAGAGEEDPEIAEWNRI 440
           EKKEKK  GAGEEDPEIAEWNRI
Sbjct: 421 EKKEKKGDGAGEEDPEIAEWNRI 391

[Close]
BLAST of Lsi11G006110 vs. NCBI nr
Match: KAG7030134.1 (Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 644.4 bits (1661), Expect = 1.3e-180
Identity = 371/445 (83.37%), Postives = 379/445 (85.17%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KSALEDDFEEEEEKE+VEPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRH    
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                       RDRD +RDRD DRDYD
Sbjct: 241 --------------------------------------------RDRDYERDRDNDRDYD 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREG-- 360
           RDRGRGR+RDRDRE  RDRDRDRDRDRDRDRDRDRDRDRY LRDEKEYGRDRDREREG  
Sbjct: 301 RDRGRGRERDRDRE--RDRDRDRDRDRDRDRDRDRDRDRYHLRDEKEYGRDRDREREGRE 360

Query: 361 ----RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKK 420
               RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRRR+GAEDREEPK+
Sbjct: 361 RERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRNGAEDREEPKR 393

Query: 421 KKEKKEKKEAGAGEEDPEIAEWNRI 440
           KKEKKEKK  GAGEEDPEIAEWNRI
Sbjct: 421 KKEKKEKKGDGAGEEDPEIAEWNRI 393

[Close]
BLAST of Lsi11G006110 vs. TAIR 10
Match: AT2G40650.1 (PRP38 family protein )

HSP 1 Score: 434.9 bits (1117), Expect = 1.4e-121
Identity = 268/440 (60.91%), Postives = 303/440 (68.86%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK+R+KL DG FSL+HVDEVI+ELLTKDYSCDIA+PR+KKRWTLE +G L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHSWKQ 240
           KS LEDDFEEEEEKEE E I D  ED++      R +SP RER+RDRDRRRDSHRH    
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMD----QRRKSPERERERDRDRRRDSHRH---- 240

Query: 241 LDLLFLDYYILTGQLTFACFSVTTMVFQATGCLLLPTVNSQDPARDRDNDRDRDYDRDYD 300
                                                   +D   DRD D DRD+DRDY+
Sbjct: 241 ----------------------------------------RDRDYDRDYDMDRDHDRDYE 300

Query: 301 RDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 360
           R+RG GRDRDR+R+RD  R+RDRDR+R RDR+RDR                         
Sbjct: 301 RERGHGRDRDRERDRDHYRERDRDRERGRDRERDR------------------------- 344

Query: 361 RERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKKE 420
                RDR RRRS SRSR           RKRH          D   DREEPKKKKEKKE
Sbjct: 361 -----RDRARRRSRSRSRD----------RKRH--------ETDDVRDREEPKKKKEKKE 344

Query: 421 K-KEAGAGEEDPEIAEWNRI 440
           K KE G    +PEIAE NR+
Sbjct: 421 KMKEDGTDHPNPEIAEMNRL 344

[Close]
BLAST of Lsi11G006110 vs. TAIR 10
Match: AT5G02070.1 (Protein kinase family protein )

HSP 1 Score: 146.7 bits (369), Expect = 7.8e-35
Identity = 76/192 (39.58%), Postives = 110/192 (57.29%), Query Frame = 0 

Query: 622 PACSKCGNLEVPYPLSTNDNCGDSRYKVYCHDDILQFKSSEGFYYNIHSIDPNAYKLIIS 681
           P C  CG + VPYPLST   CGD  Y++ C    L F +  G  Y I SI+    ++++ 
Sbjct: 41  PRCPNCGPMVVPYPLSTGPTCGDQAYRINCVGGKLYFGALHGSSYVITSINSVTQRIVLR 100

Query: 682 PPQIQKE-SCYSSDLSLGGLRLDENLPFNVSTHNTVMLFNCSDNLINSPLNCSISSPCRQ 741
           PP +    SC S+D+S  GL LD +LPF++++ NT++L NCS  ++ +P++CS +S C  
Sbjct: 101 PPGLASSVSCISADVSKQGLELDPHLPFSITSSNTILLLNCSQAMLQAPIDCSPTSLCYS 160

Query: 742 FEEKMKEASGC-KNTLCCTYLKDSAMTAHMIRVRIGGCTAYTSVVNFKPGDSF----ETW 801
           + +    AS C K  LCCT+  D + TA+ IR+  GGC AY S V   P        + W
Sbjct: 161 YIK--NNASPCSKAPLCCTFRTDGSQTAYTIRINGGGCLAYQSFVGLNPNKEVPPPGKKW 220

Query: 802 -NYGIELQWIPP 807
            + G+ELQW  P
Sbjct: 221 PDTGLELQWALP 230

[Close]
BLAST of Lsi11G006110 vs. TAIR 10
Match: AT3G53840.1 (Protein kinase superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-28
Identity = 74/212 (34.91%), Postives = 108/212 (50.94%), Query Frame = 0 

Query: 604 TMFFIFALFFQVSKAIAFPACSKCGNLEVPYPLSTNDNCGDSRYKVYCHD-DILQFKSSE 663
           T F +  L +  S   AF  C  CG+  VPYPLST  +CGD  Y++ C +   L F +  
Sbjct: 9   TTFTLSLLIYFSSTTQAFKRCPNCGSTRVPYPLSTGLDCGDPGYRIRCDNYGSLWFDTLN 68

Query: 664 GFYYNIHSIDPNAYKLIISPPQIQKESCYSSDLSLGGLRLDENLPFNVSTHNTVMLFNCS 723
           G    I +IDP+  + ++ PP  ++  C S D+   G++LD NLPFNVS  NTV++ NC+
Sbjct: 69  GSTNPIKTIDPSGQRFVLRPPGFEQNKCVSVDIKYHGIQLDLNLPFNVSCSNTVIIMNCT 128

Query: 724 ----DNLINSPLNCSISSPCRQFEEKMKEASG-CKN-TLCCTYLKDSAMTAHMI-RVRIG 783
               D   +   NCS +S C +F     EA G C+  T CC Y   +++  + + R R  
Sbjct: 129 KDGLDAYSSQGFNCSDNSLCHKFLNANLEARGNCRGVTSCCWYKTGASVNTYKVYRARPD 188

Query: 784 GCTAYTSVVNFKPGDSFETWNY-GIELQWIPP 807
            C+AY S +N         W    +E+ W  P
Sbjct: 189 MCSAYQSFMNLDLTIPVSKWGEPAVEILWEAP 220

[Close]
BLAST of Lsi11G006110 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-04
Identity = 70/163 (42.94%), Postives = 93/163 (57.06%), Query Frame = 0 

Query: 278 VNSQDPARDRDNDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDR-DRDRD 337
           ++ +D    RD D ++D DR+ DRDR + RDRDR++ RDRDRDR+R +DR RDR  RDR 
Sbjct: 49  ISEKDNENGRDKDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERSKDRQRDRHHRDRH 108

Query: 338 RDRYRLRDEKEYGRDRDREREGRERER---RDRD---RGRRRSHSRSRSRSKDREDGEYR 397
           RDR R R EK    D D  R  R+R+R   RDRD   R RRRS SRSRSRS+ R   E+R
Sbjct: 109 RDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHR 168

Query: 398 KRHTRSSLSPRRRDGAEDREEPKKKKEKKEKKEAGAGEEDPEI 434
            +             +E R   + +   K K+ +G     P++
Sbjct: 169 HK-------------SEHRSRSRSRSRSKSKRRSGFDMAPPDM 198

The following BLAST results are available for this feature:
BLAST of Lsi11G006110 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LB542.0e-12060.91Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1[more]
Q7JVL31.3e-6648.78Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=... [more]
Q6DHU41.5e-5944.09Pre-mRNA-splicing factor 38A OS=Danio rerio OX=7955 GN=prpf38a PE=2 SV=1[more]
Q0P5I67.6e-5944.14Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1[more]
Q8NAV17.6e-5944.14Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1[more]
BLAST of Lsi11G006110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BXB04.1e-18585.19Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1[more]
A0A6J1FBK81.4e-18082.95Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 S... [more]
A0A6J1G4M63.1e-18083.30Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 S... [more]
A0A6J1HPQ91.2e-17681.82Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=... [more]
A0A6J1KGY31.4e-17280.81Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=... [more]
BLAST of Lsi11G006110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031737285.11.2e-18684.79pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein... [more]
XP_038890973.11.6e-18685.33pre-mRNA-splicing factor 38 [Benincasa hispida][more]
XP_008453888.18.6e-18585.19PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo][more]
XP_023545282.11.8e-18283.75pre-mRNA-splicing factor 38-like [Cucurbita pepo subsp. pepo][more]
KAG7030134.11.3e-18083.37Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Lsi11G006110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40650.11.4e-12160.91PRP38 family protein [more]
AT5G02070.17.8e-3539.58Protein kinase family protein [more]
AT3G53840.12.4e-2834.91Protein kinase superfamily protein [more]
AT1G60900.15.5e-0442.94U2 snRNP auxilliary factor, large subunit, splicing factor [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025287Wall-associated receptor kinase, galacturonan-binding domainPFAMPF13947GUB_WAK_bindcoord: 624..679
e-value: 7.7E-7
score: 29.5
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 10..173
e-value: 3.7E-60
score: 202.8
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..439
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..332
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..367
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..438
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 278..332
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..436
NoneNo IPR availablePANTHERPTHR23142:SF1PRE-MRNA-SPLICING FACTOR 38Acoord: 1..439

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G006110.1Lsi11G006110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071011 precatalytic spliceosome
molecular_function GO:0030247 polysaccharide binding