Lsi11G005890 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G005890
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	chr11: 6245580 .. 6252490 (+)
RNA-Seq Expression	Lsi11G005890
Synteny	Lsi11G005890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATTGGGCCTCTCTCATATAATTCGGCCCAAAAGTCGGCCCTTTCGAACATTTCTCCTCTACGAATCGGAATGTAATTCTACTCCTTACATTTCTCACGTCTCTGAGAAACTCCGCAAGAAGCTAAAAATCCAAGAAAAATGGCCACTGGGATGAAGCTTCCCATGGCCGTTAGCTTGCAGAAACCCATGGCTATGGCGGCTCCATCTTCGTCATCTTCTCTTCCTAGAGGCATCAATTTCAGGACTGTTTTCTGCACAAACGCTACAAGCAAAGCTAAAATCCCTTTACCTCCCATAAACCCGAAGGATCCATTTCTTTCGAAGCTCGCTTCAGTAGCTTCAACCTCACCTGAAACGTTGCTAAACCGCCCTGCAAATTCCGATTCTCCTCCATATTTGGATATTTTTGATGCTCCTCAGCTCATGGCTGCACCTGCACAAGTAAGTTAGCTGTCCCTCGCCTCGCTTAATTTCATATTACTTTTTCGTTCTGGCTTGTATTTATATGAATTTCTGTAAGAAATCGAAGTTTTATTTAAATTAAGTTTCGTTAGGTAGCTAATGTTGTGAATTTGATGATTTTTTCTTATTGGATAAGGTCGAAAGATCAGTTTCCTACAATGAGCATAGGCCGAGGAGGCCGCCACCGGACTTGCCGTCTCTGTTACTTCATGGAAGAATTGTTTACATCGGAATGCCTGTAAGTGTTTGAATTAGTGTTACTTCAGTGCTGTACGATTTAACTTGTTACTCGAGGAACTATTCAACTAACAGAAAGGGAGAATTACAACGATTATTTCACTAGCGTAGTGTCGAGTAGTTTTATTGAAGGCAAAAATGAAGCAAATTCTTTGAAATTATACAAAATTAACACGTAAACTAAAGCACGCTGGTAAGGTGCTTCTCATGATAATCGCATATCTTAGACTTTTAGAAACCTATAGAGTGAAGGAAATTCTAGTTCAGGAATGAGTGATGTCAAGCTTTTTCAGGAGCCTTGTTGGTTGAACTGAAAGTGTTAATTAAGTTGTGTTGGGGTGCTTCGGTACCAAGATCATATTAGAACAGATTTTGTGATTACATTCGGCTACTGATTTTGAAGTTCGGCAAATTTCTTTTTCCAAGTGCTCTTTTCTTGTGGACTGATTTTCATTTCTTTCCTATCAAGTTGTATAAGCCCGGCTGAAATAGGCATTCACAATACAAGTGTAACATGGTTTTTTCCTACAAGGCATAATTGGTTTTGAATGATTTTGAAACTATTGTGTCAACGTTATGAGTAATTTTTGACTATCTTTTAAAAGAAGTTTTCAGCTTCTTGCGTTGAGTAGAGCATACCATAGTGTCTGATCCCTCTCCTTTCAATCATTTCTCCTCTCAGTTGGTTCCAGCTGTCACGGAGCTAGTTATTGCTGAACTGATGTACTTGCAATGGATGGATCCAAAAGAACCAATATATCTTTACATAAACTCCACAGGAACAACTCGTGATGATGGTGAAACGGTAAGCTTTGAATTTATTCAGTTACATGAAACGAGTGAAATTAAGCTGTCAGGAGCATGCATATCTTCTTCTTGCTTTGTAAAATCTTCTGCCTACCATGGGGGTTTTCAGGGTTTGTATTCAGACTATAAGTCTTGCTTTTATATACGCGTTGACATGAATATTGTTAAAAATTGACATGAGTTTAAATTTACCATAACTATTATATTGACACGAAACAAGAGTTCGACCCAATGCTTTATTTTTGATTTGACAATTGAAGTATATGATTTTTTTTTCCCTAATAACTGAATACTTTTGTCTGTAAATACTACATATTTGATACGAGTCCTTTCATAATTTTTTTTTCTATCAACTTAAGTTTTTAGGTTCAGTGGTGATTTAACGTAGTATCAAAGGAGGATGTTTTGTATTCAAACCCCTATAATGCCATTTCCTTCTCAATTAATATTGATTTTTGCTTGTTTGATATTTAAAAAAATTATTAAGCCCACAATGAGGAGAGTGTTGAAGTTAGATGTAAATTTAATTTACCATAATCCATTTGTGTAAGTTTTTGGTTTCAGCCATGGTTTAACAAATATCAACTTGTTTGTCTTGACCAGAAGTTCTTTTGTTTGAGATGCTTCAACATTCATTTTGTCTCCATTCAAAAATCAAGAAAAACAATCCTCTAAACACTCTCTTGTTCCTCACTCCAAATGAAATTGTAGCTTTCTTCTTTAGCTTGGCTCCTTTTGGAGTTGGTTTTTTGTATGCCCCTTGTATTCTTTCAATTTTTTTTCTCTCTCAATGAAAGCACAATTTTTATTTAAAAAAAATCAAGAAAAACAACTGAAAATGTGATTGTAGTTTTTAGGTTCTGCATTTCCAGAAATATGTTTAACTGTAATTTTTAAGATAGCTTCTTGATCCAAAATATGTGAAATTGGGTGTGGGTTAGATTTCTGAGAACAGTAATTCTTGAGTGTGTTCGGTGAATAATTTATTAAACAACATTTGTTTATTCCCGTGGTAATTACCTCAGTAGTAAACTAATGATAAAAACATGCTCATTATTTATGTAGCAAGAGAGTGAATCTATTCTGTGTCAGAACTCAGAAGGCAAGTAACTAGGATGACCATAGTACTTCTTAGAATGGATACATCACATATACCACGGAATGGTCTATCAGGTAGTTCACTTCAATTAGTACCTAACACAAAAATTATAGTAATAATAAGAAAAGAAGCGACAGGGGTTCATCTATCTCAGGACACCAATGATAGAACAGGTTTTTCTTCCTGACAAAGTACACTCCATCAACAATACCATGGAGATGGAGATTGGTCTTTCATAATCACGGCCAATGGGGTTACATGAGGTGATGTGTCTTTCACGACTTTGTGAGATCTGATCGTGAAAAGATATAAATCTTTCATAAGATTATTGAATATGTGAACACAGAGGGGCTGGGTCTTCCACTAGCTAGCTCACTATTTCAATATAGGAAAGTGGGTTTGAACAAATACGGATTTTTTAGATGAATATTCAGAAGTATGGTAATGGAGAGAGATATGTCTTTCTGTTCATGAGCTAGCTTATTAATTTGATGGTTGAAAAGAGTTTGAATCAGTATGGGTGGGTTTTACGATGCTGCATGTGTTTGTACAAGACTGGGAGATATATGTAAAATCACGTTGGAATTTTCTTGTCTGAAAAATGTACTTTAGTTTTCTGTTGATTTTGAAAATGGAAAACCGAACATGTAAAATGATCTTTTGTTTTTCCTCGAAAAATGGGTCGTGTTATGTCCCTTTACTCAACTCCAAAATGGTTTTCAAATTTTGGCTATCAGAAAACTTTTTCTTGTATTTACTAATCCATATATTTTCAAAAACATAAAAATTGAGAATGGATCTTATGCCGAACAGACCCTGCAATATCTTGTCCAGTTTACTTTTGAAACCAATCACTTGATAAGTTTATAATGCTCTTTATAGGTTTATTGATTAATTAGAAAGAGTAGCATCATATCTTGTTCAGTTTATAATTGCATGTATTCATTTGTCATCCTTCTTTCAACATGCTTAAATTATTTGACATTCAGGTAGGGATGGAGACAGAGGGTTTTGCTATCTATGATGCTATGATGCAATTAAAAAATGAGGTGTGTTTTCTTGTCCAAACCATTCAGTTCATTCCTACTATTCTTTTGGTGGCAAGATGATAACTAGATGCATTCTGGAGTCTGGAATTAGTAGTTAATAACATTGATTGGTATCTTGGTGTAAGTTAACACTGTACCGAGGGTGTGGACCCTGTGGTCAGTGGCACTGTTTTCATGAACTGGTAAGAATTTGAAATTTCTAGTGTTGTATGTGCAACAACTGACCTGAGAAATGACATGCGGATTGACCTCTTCTGCTCCAGTAATCTGCATGGACTAATAATTTAAATTTTGTACAAAAAGGTTGGAAGATTTTTTCTTTAAATGTATGTATCGTCGGAAATAATTATGCTTTGTTATTTGAATCTCTCGCTGATTTTGTGAATTTTTGATCCTCTTTGCTTTTATAAAACATGATACCAAATATCTCATACAGATACACACAGTGGCTGTTGGAGCTGCCATAGGTCAAGCTTGTCTATTGCTTGCTGCAGGAAGTGAAGGCAAACGTTTTATGATGCCACATGCCAAAGGTTTGATGCACTTGGCACGTTAATATCTGTTTTTGACTTGGTTATTTGCTCATATAGAATAATCAAATTTTCCCTTGAATTCATTTCCAGCGATGATACAGCAGCCCCGTGTCCCTTCATCTGGTTTGATGCCTGCTAGTGACGTTCTTATTCGTGCTAAAGAGGTCAAGACCCTTTTATAGCTTGATAATTTATTTCGAAGTAGAACTTAGAGCCCACTTGGATTGACTTTCTAAATGTTTAAATAGTGTTTCTAAGTGCAAAAAAGTGTTTATAAACACTTAGAAAGTCAATCCAAACGGGTTCTTAGTCTCTATGACATTGATTTTCGCCGAAGCTCTTACCACCTCGATGCAAGAAGTGAAAAAGGGAATTCTATTCAAAATCTCACTCAAGTCCTAATTAGAAAATCTTTTGCATTCACGGGTTTGCATCTTCCTACCTAGAGTGTAGGAGTGAACACTAAAACTGAACCGAATGAAAAAACCGAACCGAAAACTCAAGTTTTATTGAAGTGTCGATTCGGTTTAAAATTATAAGGAAATAAAAATTTTCGATTCGACTTTGAAAACTGAACAAAAACATTTATACAGATATTATATATTATAAAACCGAACAGAAAAAAATAGTTTATTTTATATATATAACCCCGAAAGGGAACTGAACCGAACCTAATATTTGCGGTTCGGTTTGGACCAAACAAATGGTTCGGTTCAGTTTGGTATATATCCAAAAGTCAAGCTGAATCAAACCGTGATCTAGAGTGAATGAATTTATGTTAGATTTGTATCTCATTCCCAAAAATTTTCAAGGGAAAATTTGTTTTTCTCAGCCCCCAGTTTTGTCCCCCCTCTGTCTACAAGGATACAAGTTAAGCTTTGTATATTTCATCTCGTCTTTCAGGTGATAACAAACAGGGACACACTAGTGAAACTCTTAGCAAAGCACACTGGAAATGTAAGCCTAGGCAACGTTTATTAGTCTACTCTTTTTATGAACTCATGACATACCATATAATTCATTATACAACTTTAATATTTTCAGTCACTAGAGACAGTATCGAATGTGATGAAAAGACCGTTCTACATGGATGCGACAAGAGCGAAAGAATTTGGAGTTATTGACAAGGTAAATTAGTGCACAAATTTATTTATTTATTATATGATTTCAATTTTACGGATATATCGGTAAGATATCGTCATCGACATATATTTCTGTAAGTCAAAAAATTTATTTAGATTAATAATTAAGTTATGAATATTGTTATTAGTATTCCTATTTATATTGAACTAAATAGATGACATTTTTCATGTTATACGAGCATTTATAGAAGATATCATAGATATCAATAGATATTTAATATTGATGTTGGACATATCGACGAATATTTTCATGAAGATATTGATATTGGTACTTCATTTTCATCTTTATGAATATGAAAATTTTTACAGATAGAAAAAATGTCAAACTATTTACAGAAAATAACAAAAAAATAGTGATAGACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATCATTGATAGACCCTGGTAGACTTCTATCAGCGTCTATCACAACTATTTAAAAATTTTGCTATTTTGTGTAAATAGTTTTCCTTATTTTTCTATTTTTAAAAATTTCCCTTACGAATATATTGATAAAATATCGTTGTCAAAGGATATTTATAACAACGATACTTTCGTAAATAATAAAAAATTAAAAAAAATGATATAAATTAACAATTAAGTTATTTTTACTTTCAAACAAAGTAATAAGTCTTCTTATTACTATCGGTATTCATATTGGAATAAATAGATGAGGTTTATTTGTTATTATTATTATAGTTTTTTTTATGTGTGTAGATAAAAGATGTCGGTGATGCCGATTAATCTTTAATATCGATATTGAACCTATGGACGGATACTTCAATCTATTGTTATAACACGATGCACATGTTTTGTTGCTTAAGCCCGTAAAATATAATTCTAATTTGGCAAGTTGGCTCCAGATTCTTTGGCGCGGTCAGGAGAAGATTATGGCTGATGTGGCTGCCCCAGAGGAATGGGACAAAGGAGCTGGCATCAAAGTTGTTGATGAAATCTAAATCTCCTCTCAAATCTCCTCTCCATTCATAGCAAGTAAGCCAATTATTTCTCCTTTTTACAAACTCAAAAGACTTTGTTTCTCTTTTCAGTATCCAATATGCAGATGTCTTAGAGAGCCAATAGAAATTTTAGATTTCTTCTGTGGCAGGGTTTCACTGGAATTGAAATTTGGGAGAGAATGAGAACCATAATTTTGTTGGTCCAAAGTGTCTCCATCTGTCTAGGTCATAGATTTGTAATTCCTTTTAGTCCATTTAGTTGTTAAATTGAGGGAAAAATTTGCTTGGATCAGTTGAAATCTTTAACAATAATAATACCATCTCAATGATGTAAATATGTAGCCTCCTGCAAATTTTCCTGCCTATGCTTTCCAAATACAATATATAAACTAGAAGTTTAAGCCTGAATTTTCGAGTTAGTTCAAGTTTGTTTGGTCTTTGAACTTTAAAAGTGTAAGAAGTCATTAAATTTTTAATTTTTTTTTCTTCTTGAAGTCTTTGAACTTTAAAAGGTTTTTCAATAGGTCCTAAAATTTTCAATGTTGTGCTTGATAGATCTTTGACCTATTTGATATTTTTATAATTCACAAACGTT

mRNA sequence

AGTAATTGGGCCTCTCTCATATAATTCGGCCCAAAAGTCGGCCCTTTCGAACATTTCTCCTCTACGAATCGGAATGTAATTCTACTCCTTACATTTCTCACGTCTCTGAGAAACTCCGCAAGAAGCTAAAAATCCAAGAAAAATGGCCACTGGGATGAAGCTTCCCATGGCCGTTAGCTTGCAGAAACCCATGGCTATGGCGGCTCCATCTTCGTCATCTTCTCTTCCTAGAGGCATCAATTTCAGGACTGTTTTCTGCACAAACGCTACAAGCAAAGCTAAAATCCCTTTACCTCCCATAAACCCGAAGGATCCATTTCTTTCGAAGCTCGCTTCAGTAGCTTCAACCTCACCTGAAACGTTGCTAAACCGCCCTGCAAATTCCGATTCTCCTCCATATTTGGATATTTTTGATGCTCCTCAGCTCATGGCTGCACCTGCACAAGTCGAAAGATCAGTTTCCTACAATGAGCATAGGCCGAGGAGGCCGCCACCGGACTTGCCGTCTCTGTTACTTCATGGAAGAATTGTTTACATCGGAATGCCTTTGGTTCCAGCTGTCACGGAGCTAGTTATTGCTGAACTGATGTACTTGCAATGGATGGATCCAAAAGAACCAATATATCTTTACATAAACTCCACAGGAACAACTCGTGATGATGGTGAAACGATACACACAGTGGCTGTTGGAGCTGCCATAGGTCAAGCTTGTCTATTGCTTGCTGCAGGAAGTGAAGGCAAACGTTTTATGATGCCACATGCCAAAGCGATGATACAGCAGCCCCGTGTCCCTTCATCTGGTTTGATGCCTGCTAGTGACGTGATAACAAACAGGGACACACTAGTGAAACTCTTAGCAAAGCACACTGGAAATATTCTTTGGCGCGGTCAGGAGAAGATTATGGCTGATGTGGCTGCCCCAGAGGAATGGGACAAAGGAGCTGGCATCAAAGTTGTTGATGAAATCTAAATCTCCTCTCAAATCTCCTCTCCATTCATAGCAAGGTTTCACTGGAATTGAAATTTGGGAGAGAATGAGAACCATAATTTTGTTGGTCCAAAGTGTCTCCATCTGTCTAGGTCATAGATTTGTAATTCCTTTTAGTCCATTTAGTTGTTAAATTGAGGGAAAAATTTGCTTGGATCAGTTGAAATCTTTAACAATAATAATACCATCTCAATGATGTAAATATGTAGCCTCCTGCAAATTTTCCTGCCTATGCTTTCCAAATACAATATATAAACTAGAAGTTTAAGCCTGAATTTTCGAGTTAGTTCAAGTTTGTTTGGTCTTTGAACTTTAAAAGTGTAAGAAGTCATTAAATTTTTAATTTTTTTTTCTTCTTGAAGTCTTTGAACTTTAAAAGGTTTTTCAATAGGTCCTAAAATTTTCAATGTTGTGCTTGATAGATCTTTGACCTATTTGATATTTTTATAATTCACAAACGTT

Coding sequence (CDS)

ATGGCCACTGGGATGAAGCTTCCCATGGCCGTTAGCTTGCAGAAACCCATGGCTATGGCGGCTCCATCTTCGTCATCTTCTCTTCCTAGAGGCATCAATTTCAGGACTGTTTTCTGCACAAACGCTACAAGCAAAGCTAAAATCCCTTTACCTCCCATAAACCCGAAGGATCCATTTCTTTCGAAGCTCGCTTCAGTAGCTTCAACCTCACCTGAAACGTTGCTAAACCGCCCTGCAAATTCCGATTCTCCTCCATATTTGGATATTTTTGATGCTCCTCAGCTCATGGCTGCACCTGCACAAGTCGAAAGATCAGTTTCCTACAATGAGCATAGGCCGAGGAGGCCGCCACCGGACTTGCCGTCTCTGTTACTTCATGGAAGAATTGTTTACATCGGAATGCCTTTGGTTCCAGCTGTCACGGAGCTAGTTATTGCTGAACTGATGTACTTGCAATGGATGGATCCAAAAGAACCAATATATCTTTACATAAACTCCACAGGAACAACTCGTGATGATGGTGAAACGATACACACAGTGGCTGTTGGAGCTGCCATAGGTCAAGCTTGTCTATTGCTTGCTGCAGGAAGTGAAGGCAAACGTTTTATGATGCCACATGCCAAAGCGATGATACAGCAGCCCCGTGTCCCTTCATCTGGTTTGATGCCTGCTAGTGACGTGATAACAAACAGGGACACACTAGTGAAACTCTTAGCAAAGCACACTGGAAATATTCTTTGGCGCGGTCAGGAGAAGATTATGGCTGATGTGGCTGCCCCAGAGGAATGGGACAAAGGAGCTGGCATCAAAGTTGTTGATGAAATCTAA

Protein sequence

MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGETIHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSGLMPASDVITNRDTLVKLLAKHTGNILWRGQEKIMADVAAPEEWDKGAGIKVVDEI

Homology

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BLAST of Lsi11G005890 vs. ExPASy Swiss-Prot
Match: Q8L770 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 7.9e-101
Identity = 206/329 (62.61%), Postives = 229/329 (69.60%), Query Frame = 0


Query: 9   MAVSLQKPMAMAAPSSSSSLPR---------GINFRTV-FCTNATSKAKIPLPPINPKDP 68
           MA  LQ  M    P SSS  P            N +T  +   A + AKIP+PPINPKDP
Sbjct: 1   MASCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDP 60

Query: 69  FLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPP 128
           FLS LAS+A+ SPE LLNRP N+D PPYLDIFD+PQLM++PAQVERSV+YNEHRPR PPP
Sbjct: 61  FLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPP 120

Query: 129 DLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET-- 188
           DLPS+LL GRIVYIGMPLVPAVTELV+AELMYLQW+DPKEPIY+YINSTGTTRDDGET  
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 189 ------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPS 248
                             +HTV VGAAIGQACLLL+AG++GKRFMMPHAKAMIQQPRVPS
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 249 SGLMPASD-------VITNRDTLVKLLAKHTGN--------------------------- 273
           SGLMPASD       VITNRD LV+LL+KHTGN                           
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

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BLAST of Lsi11G005890 vs. ExPASy Swiss-Prot
Match: Q9XJ35 (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-26
Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 0


Query: 112 RPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTR 171
           RPR  PPDLPSLLL  RI Y+GMP+VPAVTEL++A+ M+L + +P +PIYLYINS GT  
Sbjct: 164 RPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQN 223

Query: 172 DDGET--------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMI 231
           +  ET                    ++T+  G A GQA +LL+ G +G R + PH+   +
Sbjct: 224 EKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKL 283

Query: 232 QQPRV-PSSGL-----MPASDVITNRDTLVKLLAKHTGNILWRGQEKIMADVAAPEEWDK 270
             P+V  SSG      + A ++  N +  ++LLAK TG    + +E+I  D+  P+    
Sbjct: 284 YLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGTG----KSKEQINEDIKRPKYLQA 343

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BLAST of Lsi11G005890 vs. ExPASy Swiss-Prot
Match: Q9L4P4 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpR PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.9e-25
Identity = 67/183 (36.61%), Postives = 104/183 (56.83%), Query Frame = 0


Query: 96  MAAPAQVERSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPA----------VTELVI 155
           M    Q  ++  Y +   R PPPDLPSLLL  RI+Y+GMPL  +          VTEL+I
Sbjct: 1   MLESIQAVQAPYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELII 60

Query: 156 AELMYLQWMDPKEPIYLYINSTGTTRDDGETI--------------------HTVAVGAA 215
           A+L+YL++ +P++PIY YINSTGT+   G+ I                    HT+ +G A
Sbjct: 61  AQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQA 120

Query: 216 IGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG-----LMPASDVITNRDTLVKLLAK 244
           +G A ++L+ G+ G R  +PHA  ++ QPR  + G      + A +V+ N+ T++++ A+
Sbjct: 121 MGTAAMILSGGTPGNRASLPHATIVLNQPRTGAQGQASDIQIRAKEVLANKRTMLEIFAR 180

[Close]

BLAST of Lsi11G005890 vs. ExPASy Swiss-Prot
Match: Q8LB10 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 76/189 (40.21%), Postives = 108/189 (57.14%), Query Frame = 0


Query: 115 RPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRD-- 174
           +PPPDL S L   RIVY+GM LVP+VTEL++AE +YLQ+ D ++PIYLYINSTGTT++  
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGE 160

Query: 175 ----DGET-------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPR 234
               D E              I T+ VG A G+A LLL AG++G R  +P +  MI+QP 
Sbjct: 161 KLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPI 220

Query: 235 VPSSGLMPASDVITNR-------DTLVKLLAKHTGNILWRGQEKIMADVAAPEEWDKGAG 276
               G   A+DV   R         +VKL +KH G    +  E+I AD+  P+ +     
Sbjct: 221 ARFQG--QATDVEIARKEIKHIKTEMVKLYSKHIG----KSPEQIEADMKRPKYFSPTEA 280

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BLAST of Lsi11G005890 vs. ExPASy Swiss-Prot
Match: P74466 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=clpR PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-24
Identity = 69/189 (36.51%), Postives = 109/189 (57.67%), Query Frame = 0


Query: 104 RSVSYNEHRPRRPPPDLPSLLLHGRIVYIGMPLVPA----------VTELVIAELMYLQW 163
           +S  Y +   + PPPDL SLLL  RIVY+GMPL  +          VT+L+IA+L+YLQ+
Sbjct: 7   QSSYYGDMAFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQF 66

Query: 164 MDPKEPIYLYINSTGTTRDDGET--------------------IHTVAVGAAIGQACLLL 223
            DP +PIY YINSTGT+   G+                     +HT+ +G A+G A ++L
Sbjct: 67  DDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMIL 126

Query: 224 AAGSEGKRFMMPHAKAMIQQPRVPSSG-----LMPASDVITNRDTLVKLLAKHTGNILWR 258
           ++G++G R  +PHA  ++ Q R  + G      + A +VI+N+ T++++L+ +TG    +
Sbjct: 127 SSGTKGYRASLPHATIVLNQNRTGAQGQATDIQIRAKEVISNKQTMLEILSLNTG----Q 186

[Close]

BLAST of Lsi11G005890 vs. ExPASy TrEMBL
Match: A0A6J1D9I5 (ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN=LOC111018868 PE=3 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 7.4e-134
Identity = 263/329 (79.94%), Postives = 269/329 (81.76%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFL 60
           MATGMKLPMA+SLQKPMAMA+ SSSSSL RG NFRTV CTNATSKAKIPLPPINPKDPFL
Sbjct: 1   MATGMKLPMAISLQKPMAMASQSSSSSLARGTNFRTVCCTNATSKAKIPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120
           SKLASVASTSPETLLNRP+NSDSPPYLD+FDAPQLMAAPAQVERSVSYNEHRPRRPPPDL
Sbjct: 61  SKLASVASTSPETLLNRPSNSDSPPYLDLFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET---- 180
           PSLLL+GRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET    
Sbjct: 121 PSLLLNGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGETVGME 180

Query: 181 ----------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG 240
                           IHTVAVGAAIGQACLLLAAGS+GKRFMMPHAKAMIQQPRVPSSG
Sbjct: 181 TEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSQGKRFMMPHAKAMIQQPRVPSSG 240

Query: 241 LMPASD-------VITNRDTLVKLLAKHTGN----------------------------I 275
           LMPASD       VITNRDTLVKLLAKHTGN                            I
Sbjct: 241 LMPASDVLIRAKEVITNRDTLVKLLAKHTGNSLETVSNVMRRPFYMDSTRAKEFGVIDKI 300

[Close]

BLAST of Lsi11G005890 vs. ExPASy TrEMBL
Match: A0A1S3BXZ3 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103494643 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.1e-129
Identity = 256/331 (77.34%), Postives = 267/331 (80.66%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKP--MAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDP 60
           MA GMKLPMAV+LQKP  MAMAAPSSSSSL R INFRTV C+NATSKAKIP+PPINPKDP
Sbjct: 1   MAIGMKLPMAVTLQKPMAMAMAAPSSSSSLHRAINFRTVSCSNATSKAKIPMPPINPKDP 60

Query: 61  FLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPP 120
           FLSKLASVASTSPETLLNRP NSDSPPYLDIFDAP+LMAAPAQVERSVSYNEHRPRRPPP
Sbjct: 61  FLSKLASVASTSPETLLNRPENSDSPPYLDIFDAPRLMAAPAQVERSVSYNEHRPRRPPP 120

Query: 121 DLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET-- 180
           DLPSLLLHGRIVYIGMPLVPAVTEL++AELMYLQWMDPKEPIY+YINSTGTTRDDGET  
Sbjct: 121 DLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKEPIYIYINSTGTTRDDGETIG 180

Query: 181 ------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPS 240
                             IHTVAVGAAIGQACLLLAAGSEG+R+MMPHAKAMIQQPRVPS
Sbjct: 181 METEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSEGRRYMMPHAKAMIQQPRVPS 240

Query: 241 SGLMPASD-------VITNRDTLVKLLAKHTGN--------------------------- 275
           SGLMPASD       VITNRDTLVKLLAKHTGN                           
Sbjct: 241 SGLMPASDVLIRAKEVITNRDTLVKLLAKHTGNSVETVSNVMKRPFYMDATLAKEFGVVD 300

[Close]

BLAST of Lsi11G005890 vs. ExPASy TrEMBL
Match: A0A5A7U3K5 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00970 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.1e-129
Identity = 256/331 (77.34%), Postives = 267/331 (80.66%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKP--MAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDP 60
           MA GMKLPMAV+LQKP  MAMAAPSSSSSL R INFRTV C+NATSKAKIP+PPINPKDP
Sbjct: 1   MAIGMKLPMAVTLQKPMAMAMAAPSSSSSLHRAINFRTVSCSNATSKAKIPMPPINPKDP 60

Query: 61  FLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPP 120
           FLSKLASVASTSPETLLNRP NSDSPPYLDIFDAP+LMAAPAQVERSVSYNEHRPRRPPP
Sbjct: 61  FLSKLASVASTSPETLLNRPENSDSPPYLDIFDAPRLMAAPAQVERSVSYNEHRPRRPPP 120

Query: 121 DLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET-- 180
           DLPSLLLHGRIVYIGMPLVPAVTEL++AELMYLQWMDPKEPIY+YINSTGTTRDDGET  
Sbjct: 121 DLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKEPIYIYINSTGTTRDDGETIG 180

Query: 181 ------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPS 240
                             IHTVAVGAAIGQACLLLAAGSEG+R+MMPHAKAMIQQPRVPS
Sbjct: 181 METEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSEGRRYMMPHAKAMIQQPRVPS 240

Query: 241 SGLMPASD-------VITNRDTLVKLLAKHTGN--------------------------- 275
           SGLMPASD       VITNRDTLVKLLAKHTGN                           
Sbjct: 241 SGLMPASDVLIRAKEVITNRDTLVKLLAKHTGNSVETVSNVMKRPFYMDATLAKEFGVVD 300

[Close]

BLAST of Lsi11G005890 vs. ExPASy TrEMBL
Match: A0A6J1G379 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111450387 PE=3 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.7e-127
Identity = 249/330 (75.45%), Postives = 264/330 (80.00%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFL 60
           MATGMKLPMAVSLQKPMAMA PSSSS LPRGINFRT    NATSKAKIPLPPINPKDPFL
Sbjct: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120
           SKLASVASTSPETLL+RP NSDS PYLDIFD+PQLMAAPAQVERSVSYNEHR RRPPPDL
Sbjct: 61  SKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET---- 180
           PSLLLHGRIVYIGMPLVPAVTELVIA+LMYLQWMDPKEPIY+YINS+GTTRDDGET    
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAME 180

Query: 181 ----------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG 240
                           IHT+ VGAAIGQACLLLAAG++G+RFMMPH+KAMIQQPRVPSSG
Sbjct: 181 TEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGRRFMMPHSKAMIQQPRVPSSG 240

Query: 241 LMPASD-------VITNRDTLVKLLAKHTGN----------------------------I 276
           LMPASD       VITNRDTLV+LLAKHTGN                            I
Sbjct: 241 LMPASDVLIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKI 300

[Close]

BLAST of Lsi11G005890 vs. ExPASy TrEMBL
Match: A0A6J1KFX9 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111493541 PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 2.4e-124
Identity = 245/330 (74.24%), Postives = 262/330 (79.39%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFL 60
           MATGMKLPMAVSLQKPMAMA PSSSS LPR INF T    +ATSKAKIPLPPINPKDPFL
Sbjct: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRRINFSTCCSMSATSKAKIPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120
           +KLASVASTSPETLL+RP NSDS PYLDIFD+PQLMAAPAQVERSVSYNEHR RRPPPDL
Sbjct: 61  AKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET---- 180
           PSLLLHGRIVYIGMPLVPAVTELVIA+LMYLQWMDPKEPIY+YINS+GTTRDDGET    
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAME 180

Query: 181 ----------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG 240
                           IHT+ VGAAIGQACLLLAAG++G+RFMMPH+KAMIQQPRVPSSG
Sbjct: 181 TEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGRRFMMPHSKAMIQQPRVPSSG 240

Query: 241 LMPASD-------VITNRDTLVKLLAKHTGN----------------------------I 276
           LMPASD       VITNRDTLV+LLAKHTGN                            I
Sbjct: 241 LMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKQFGVIDKI 300

[Close]

BLAST of Lsi11G005890 vs. NCBI nr
Match: XP_038890491.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Benincasa hispida] >XP_038890492.1 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Benincasa hispida])

HSP 1 Score: 498.4 bits (1282), Expect = 3.9e-137
Identity = 269/329 (81.76%), Postives = 271/329 (82.37%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFL 60
           MATGMKLPMAV+LQKPMAMAAPSSSSSLPRGINFRT+ CTN TSKAKIPLPPINPKDPFL
Sbjct: 1   MATGMKLPMAVTLQKPMAMAAPSSSSSLPRGINFRTISCTNGTSKAKIPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120
           SKLASVASTSPETLLNRP NSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL
Sbjct: 61  SKLASVASTSPETLLNRPKNSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET---- 180
           PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET    
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGETVGME 180

Query: 181 ----------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG 240
                           IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG
Sbjct: 181 TEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG 240

Query: 241 LMPASD-------VITNRDTLVKLLAKHTGN----------------------------I 275
           LMPASD       VITNRDTLVKLLAKHTGN                            I
Sbjct: 241 LMPASDVLIRAKEVITNRDTLVKLLAKHTGNPIETVSNVMQRPFYMDATKAKEFGVIDKI 300

[Close]

BLAST of Lsi11G005890 vs. NCBI nr
Match: XP_022150809.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Momordica charantia] >XP_022150810.1 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Momordica charantia])

HSP 1 Score: 486.5 bits (1251), Expect = 1.5e-133
Identity = 263/329 (79.94%), Postives = 269/329 (81.76%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFL 60
           MATGMKLPMA+SLQKPMAMA+ SSSSSL RG NFRTV CTNATSKAKIPLPPINPKDPFL
Sbjct: 1   MATGMKLPMAISLQKPMAMASQSSSSSLARGTNFRTVCCTNATSKAKIPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120
           SKLASVASTSPETLLNRP+NSDSPPYLD+FDAPQLMAAPAQVERSVSYNEHRPRRPPPDL
Sbjct: 61  SKLASVASTSPETLLNRPSNSDSPPYLDLFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET---- 180
           PSLLL+GRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET    
Sbjct: 121 PSLLLNGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGETVGME 180

Query: 181 ----------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG 240
                           IHTVAVGAAIGQACLLLAAGS+GKRFMMPHAKAMIQQPRVPSSG
Sbjct: 181 TEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSQGKRFMMPHAKAMIQQPRVPSSG 240

Query: 241 LMPASD-------VITNRDTLVKLLAKHTGN----------------------------I 275
           LMPASD       VITNRDTLVKLLAKHTGN                            I
Sbjct: 241 LMPASDVLIRAKEVITNRDTLVKLLAKHTGNSLETVSNVMRRPFYMDSTRAKEFGVIDKI 300

[Close]

BLAST of Lsi11G005890 vs. NCBI nr
Match: XP_008454159.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucumis melo] >XP_008454167.1 PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucumis melo] >KAA0048029.1 ATP-dependent Clp protease proteolytic subunit-related protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 472.6 bits (1215), Expect = 2.3e-129
Identity = 256/331 (77.34%), Postives = 267/331 (80.66%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKP--MAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDP 60
           MA GMKLPMAV+LQKP  MAMAAPSSSSSL R INFRTV C+NATSKAKIP+PPINPKDP
Sbjct: 1   MAIGMKLPMAVTLQKPMAMAMAAPSSSSSLHRAINFRTVSCSNATSKAKIPMPPINPKDP 60

Query: 61  FLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPP 120
           FLSKLASVASTSPETLLNRP NSDSPPYLDIFDAP+LMAAPAQVERSVSYNEHRPRRPPP
Sbjct: 61  FLSKLASVASTSPETLLNRPENSDSPPYLDIFDAPRLMAAPAQVERSVSYNEHRPRRPPP 120

Query: 121 DLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET-- 180
           DLPSLLLHGRIVYIGMPLVPAVTEL++AELMYLQWMDPKEPIY+YINSTGTTRDDGET  
Sbjct: 121 DLPSLLLHGRIVYIGMPLVPAVTELIVAELMYLQWMDPKEPIYIYINSTGTTRDDGETIG 180

Query: 181 ------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPS 240
                             IHTVAVGAAIGQACLLLAAGSEG+R+MMPHAKAMIQQPRVPS
Sbjct: 181 METEGFAIYDAMMQLKNEIHTVAVGAAIGQACLLLAAGSEGRRYMMPHAKAMIQQPRVPS 240

Query: 241 SGLMPASD-------VITNRDTLVKLLAKHTGN--------------------------- 275
           SGLMPASD       VITNRDTLVKLLAKHTGN                           
Sbjct: 241 SGLMPASDVLIRAKEVITNRDTLVKLLAKHTGNSVETVSNVMKRPFYMDATLAKEFGVVD 300

[Close]

BLAST of Lsi11G005890 vs. NCBI nr
Match: XP_023545293.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023545294.1 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023545295.1 ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464.5 bits (1194), Expect = 6.2e-127
Identity = 250/330 (75.76%), Postives = 264/330 (80.00%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFL 60
           MATGMKLPMAVSLQKPMAMA PSSSS LPRGINFRT    NATSKAKIPLPPINPKDPFL
Sbjct: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120
           SKLASVASTSPETLL+RP NSDS PYLDIFD+PQLMAAPAQVERSVSYNEHR RRPPPDL
Sbjct: 61  SKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET---- 180
           PSLLLHGRIVYIGMPLVPAVTELVIA+LMYLQWMDPKEPIY+YINS+GTTRDDGET    
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETVAME 180

Query: 181 ----------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSG 240
                           IHT+ VGAAIGQACLLLAAG++GKRFMMPH+KAMIQQPRVPSSG
Sbjct: 181 TEGFAIYDAMMQLKNEIHTLTVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSG 240

Query: 241 LMPASD-------VITNRDTLVKLLAKHTGN----------------------------I 276
           LMPASD       VITNRDTLV+LLAKHTGN                            I
Sbjct: 241 LMPASDILIRAKEVITNRDTLVELLAKHTGNSLETVANAMKRPFYMDAIKAKEFGVIDKI 300

[Close]

BLAST of Lsi11G005890 vs. NCBI nr
Match: KAG7030236.1 (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 463.4 bits (1191), Expect = 1.4e-126
Identity = 250/344 (72.67%), Postives = 264/344 (76.74%), Query Frame = 0


Query: 1   MATGMKLPMAVSLQKPMAMAAPSSSSSLPRGINFRTVFCTNATSKAKIPLPPINPKDPFL 60
           MATGMKLPMAVSLQKPMAMA PSSSS LPRGINFRT    NATSKAKIPLPPINPKDPFL
Sbjct: 1   MATGMKLPMAVSLQKPMAMAVPSSSSRLPRGINFRTCCSMNATSKAKIPLPPINPKDPFL 60

Query: 61  SKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPPDL 120
           SKLASVASTSPETLL+RP NSDS PYLDIFD+PQLMAAPAQVERSVSYNEHR RRPPPDL
Sbjct: 61  SKLASVASTSPETLLSRPGNSDSLPYLDIFDSPQLMAAPAQVERSVSYNEHRSRRPPPDL 120

Query: 121 PSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGETIHTV 180
           PSLLLHGRIVYIGMPLVPAVTELVIA+LMYLQWMDPKEPIY+YINS+GTTRDDGETIHT+
Sbjct: 121 PSLLLHGRIVYIGMPLVPAVTELVIAQLMYLQWMDPKEPIYIYINSSGTTRDDGETIHTL 180

Query: 181 AVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPSSGLMPASD-------------- 240
            VGAAIGQACLLLAAG++GKRFMMPH+KAMIQQPRVPSSGLMPASD              
Sbjct: 181 TVGAAIGQACLLLAAGTKGKRFMMPHSKAMIQQPRVPSSGLMPASDVLIRAKEVQILLLL 240

Query: 241 ---------------------------VITNRDTLVKLLAKHTGN--------------- 276
                                      VITNRDTLV+LLAKHTGN               
Sbjct: 241 DNLFEVELRNFPLQGYKLSFLFHLVFQVITNRDTLVELLAKHTGNSLETVANAMKRPFYM 300

[Close]

BLAST of Lsi11G005890 vs. TAIR 10
Match: AT1G09130.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 368.2 bits (944), Expect = 5.6e-102
Identity = 206/329 (62.61%), Postives = 229/329 (69.60%), Query Frame = 0


Query: 9   MAVSLQKPMAMAAPSSSSSLPR---------GINFRTV-FCTNATSKAKIPLPPINPKDP 68
           MA  LQ  M    P SSS  P            N +T  +   A + AKIP+PPINPKDP
Sbjct: 1   MASCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDP 60

Query: 69  FLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPP 128
           FLS LAS+A+ SPE LLNRP N+D PPYLDIFD+PQLM++PAQVERSV+YNEHRPR PPP
Sbjct: 61  FLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPP 120

Query: 129 DLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET-- 188
           DLPS+LL GRIVYIGMPLVPAVTELV+AELMYLQW+DPKEPIY+YINSTGTTRDDGET  
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 189 ------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPS 248
                             +HTV VGAAIGQACLLL+AG++GKRFMMPHAKAMIQQPRVPS
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 249 SGLMPASD-------VITNRDTLVKLLAKHTGN--------------------------- 273
           SGLMPASD       VITNRD LV+LL+KHTGN                           
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

[Close]

BLAST of Lsi11G005890 vs. TAIR 10
Match: AT1G09130.2 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 368.2 bits (944), Expect = 5.6e-102
Identity = 206/329 (62.61%), Postives = 229/329 (69.60%), Query Frame = 0


Query: 9   MAVSLQKPMAMAAPSSSSSLPR---------GINFRTV-FCTNATSKAKIPLPPINPKDP 68
           MA  LQ  M    P SSS  P            N +T  +   A + AKIP+PPINPKDP
Sbjct: 1   MASCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDP 60

Query: 69  FLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPP 128
           FLS LAS+A+ SPE LLNRP N+D PPYLDIFD+PQLM++PAQVERSV+YNEHRPR PPP
Sbjct: 61  FLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPP 120

Query: 129 DLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET-- 188
           DLPS+LL GRIVYIGMPLVPAVTELV+AELMYLQW+DPKEPIY+YINSTGTTRDDGET  
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 189 ------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPS 248
                             +HTV VGAAIGQACLLL+AG++GKRFMMPHAKAMIQQPRVPS
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 249 SGLMPASD-------VITNRDTLVKLLAKHTGN--------------------------- 273
           SGLMPASD       VITNRD LV+LL+KHTGN                           
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

[Close]

BLAST of Lsi11G005890 vs. TAIR 10
Match: AT1G09130.3 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein )

HSP 1 Score: 367.5 bits (942), Expect = 9.6e-102
Identity = 205/327 (62.69%), Postives = 228/327 (69.72%), Query Frame = 0


Query: 9   MAVSLQKPMAMAAPSSSSSLPR---------GINFRTV-FCTNATSKAKIPLPPINPKDP 68
           MA  LQ  M    P SSS  P            N +T  +   A + AKIP+PPINPKDP
Sbjct: 1   MASCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPPINPKDP 60

Query: 69  FLSKLASVASTSPETLLNRPANSDSPPYLDIFDAPQLMAAPAQVERSVSYNEHRPRRPPP 128
           FLS LAS+A+ SPE LLNRP N+D PPYLDIFD+PQLM++PAQVERSV+YNEHRPR PPP
Sbjct: 61  FLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPP 120

Query: 129 DLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRDDGET-- 188
           DLPS+LL GRIVYIGMPLVPAVTELV+AELMYLQW+DPKEPIY+YINSTGTTRDDGET  
Sbjct: 121 DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVG 180

Query: 189 ------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPRVPS 248
                             +HTV VGAAIGQACLLL+AG++GKRFMMPHAKAMIQQPRVPS
Sbjct: 181 MESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPS 240

Query: 249 SGLMPASD-------VITNRDTLVKLLAKHTGN--------------------------- 271
           SGLMPASD       VITNRD LV+LL+KHTGN                           
Sbjct: 241 SGLMPASDVLIRAKEVITNRDILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVID 300

[Close]

BLAST of Lsi11G005890 vs. TAIR 10
Match: AT1G49970.1 (CLP protease proteolytic subunit 1 )

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-27
Identity = 73/184 (39.67%), Postives = 104/184 (56.52%), Query Frame = 0


Query: 112 RPRRPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTR 171
           RPR  PPDLPSLLL  RI Y+GMP+VPAVTEL++A+ M+L + +P +PIYLYINS GT  
Sbjct: 164 RPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQN 223

Query: 172 DDGET--------------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMI 231
           +  ET                    ++T+  G A GQA +LL+ G +G R + PH+   +
Sbjct: 224 EKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKL 283

Query: 232 QQPRV-PSSGL-----MPASDVITNRDTLVKLLAKHTGNILWRGQEKIMADVAAPEEWDK 270
             P+V  SSG      + A ++  N +  ++LLAK TG    + +E+I  D+  P+    
Sbjct: 284 YLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGTG----KSKEQINEDIKRPKYLQA 343

[Close]

BLAST of Lsi11G005890 vs. TAIR 10
Match: AT4G17040.1 (CLP protease R subunit 4 )

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-25
Identity = 76/189 (40.21%), Postives = 108/189 (57.14%), Query Frame = 0


Query: 115 RPPPDLPSLLLHGRIVYIGMPLVPAVTELVIAELMYLQWMDPKEPIYLYINSTGTTRD-- 174
           +PPPDL S L   RIVY+GM LVP+VTEL++AE +YLQ+ D ++PIYLYINSTGTT++  
Sbjct: 101 QPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGE 160

Query: 175 ----DGET-------------IHTVAVGAAIGQACLLLAAGSEGKRFMMPHAKAMIQQPR 234
               D E              I T+ VG A G+A LLL AG++G R  +P +  MI+QP 
Sbjct: 161 KLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPI 220

Query: 235 VPSSGLMPASDVITNR-------DTLVKLLAKHTGNILWRGQEKIMADVAAPEEWDKGAG 276
               G   A+DV   R         +VKL +KH G    +  E+I AD+  P+ +     
Sbjct: 221 ARFQG--QATDVEIARKEIKHIKTEMVKLYSKHIG----KSPEQIEADMKRPKYFSPTEA 280

The following BLAST results are available for this feature:

BLAST of Lsi11G005890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L770	7.9e-101	62.61	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
Q9XJ35	6.4e-26	39.67	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic ...	[more]
Q9L4P4	1.9e-25	36.61	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus el...	[more]
Q8LB10	1.6e-24	40.21	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
P74466	1.6e-24	36.51	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp...	[more]

BLAST of Lsi11G005890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9I5	7.4e-134	79.94	ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN...	[more]
A0A1S3BXZ3	1.1e-129	77.34	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7U3K5	1.1e-129	77.34	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1G379	6.7e-127	75.45	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KFX9	2.4e-124	74.24	ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of Lsi11G005890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890491.1	3.9e-137	81.76	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
XP_022150809.1	1.5e-133	79.94	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
XP_008454159.1	2.3e-129	77.34	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chl...	[more]
XP_023545293.1	6.2e-127	75.76	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]
KAG7030236.1	1.4e-126	72.67	ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic ...	[more]

BLAST of Lsi11G005890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09130.1	5.6e-102	62.61	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.2	5.6e-102	62.61	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G09130.3	9.6e-102	62.69	ATP-dependent caseinolytic (Clp) protease/crotonase family protein	[more]
AT1G49970.1	4.5e-27	39.67	CLP protease proteolytic subunit 1	[more]
AT4G17040.1	1.1e-25	40.21	CLP protease R subunit 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001907	ATP-dependent Clp protease proteolytic subunit	PRINTS	PR00127	CLPPROTEASEP	coord: 179..196 score: 42.08 coord: 119..134 score: 36.25 coord: 200..219 score: 37.38
IPR001907	ATP-dependent Clp protease proteolytic subunit	CDD	cd07017	S14_ClpP_2	coord: 128..256 e-value: 8.83134E-46 score: 149.899
None	No IPR available	GENE3D	3.90.226.10		coord: 93..265 e-value: 2.6E-28 score: 100.9
None	No IPR available	PANTHER	PTHR10381:SF6	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 3, CHLOROPLASTIC	coord: 176..244 coord: 32..171
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 122..247 e-value: 8.3E-20 score: 71.4
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 176..244
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 32..171
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 114..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G005890.1	Lsi11G005890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity