Lsi11G005530 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G005530
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	LysM domain-containing protein
Location	chr11: 5777096 .. 5779473 (+)
RNA-Seq Expression	Lsi11G005530
Synteny	Lsi11G005530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTCAAACTTAAGAAGTCCTCTTACTGAATTTTTGTTTACTTGTTGGAGGTGGAAACAGACGAATTGAAAGTGAGGGAACTAGAGTACAGAAAACATTTTAGCCTTCAGTACTCCTGTTATAGATATGTGGTTTATTACAGCAATGTAGCTTGTAGGTACTCATTTTCTTTAACATTGATCTTGAAAAATCACTGGTGCTTTGAAGTTCGAACATTAATTGAAATTTGTTAACCTTTCACAACAATAACTGTACTTCATACTCTGTTGTTTGTGTTCCCAACTCTCAAGTCCATGTTAAATTTATGAAGGACGGTCATGTTCCATTGTTGAGATCAACTCTTTATGATGGCTATGTTCTTTGATACATTATTGAAATCACCAGCAGTCTGAACAATACTTGAAACTTGAGTGTGTGTATTTATATATATTAATGAAATAAACCACTTTCATCTAGAAAATAAATGAAAGAATACAAAAATACCAAGCCCACAAAAGAGGGACCCCTCTAAATGAAGGGGGACCAATCAAGCAAAATAGTCCTCTAGAATAGTTACAAAAGAACTTGGAAGTCGAAGCCCAAAGAGATAGATGAAACTCAATAAGAGTCCAAACATCACATTACTAGGGCTCCTTTCCAACCCTCTAAACACTCTATTGTTCCTTTTCTCCCAAAAATTCCACATGATAGTACACACCTCAGCCACCCATAAGAAACGACCCTTCTTACAAAAGAGCGGATGGAGGAGGAACTCCTCGATCATATCACTGGTGTGAAACATGTGTATCTTTCATCTCAATACATGGGTTACAAAAATGAAGAATGCATTTTTTAAGTAGTTCCCCCCTCAACAAAAAAAAAAAAAAAAAAAAAAATCCAAATTTCCCCTTTTTGTTGACAGTGATAAAATATTTTTTCAAAAAAATTATTTTATCTAAAAATAATAATTCACCTTAAAAAAATTGTTTTAAATTTTGGGCAAGTACTATAAATAGAAAAAATATAAAACCATTTAGAAAGGTAGAAAAATTTTAGCAAGTAGACAATCTTAATCTAAAAATTGTTTCTTAAAATATTATTCATAACTAAAAAAATGTTCTTCAGACAATTTTAATTCCTAGAACAGTACTCCGTTGAAAACAACAACAAAACAAAATTTAGAAGAGCGTTGAAAAATAAACCTCGAAAAAACAAAAACCCGCATGAAAGATTTTCCAACTTGCCAAATTGATTTAAATCCAAAAGGATTGCTGAAAAAAAATACTTCCAATCTTATTTTATTTTTTTTATTTCAGTCCTTAGACTTAGCAAAATAGGAAAAAAAAAAAAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCATAATCCTTCTAAATTGTAAAATATCAATTAGGAAGGATCAATTATAATTGTTGAAATCAACTCTTTTTGGTGGCCATGAACTTGGGTGTGTTGTTGAAATCATCGATAGTCTTAACCATAGTTGACACTTGTATATCCTTCACAAAAGTACCTTGGCAACAAAAATGAAGAGTGCAATAGTTTGTTTTCCCCACTCTCAAGCCCTTGTAGTATATCAACTAGGAAGGGTCGAGTTCAATTGTTGAGATCAATCTTTTTTGTGGAATTTCATTTACATATATTGTTCGTATAGGTTGTAGACATAAAATGTCTAAATAACATGATGGAACTGTGGCATTGTTTGAGATGAATATTTTTTTATGGCTATGGACTTTGGAGTATTGATTTCGTTTATATATATTGTTCTTGTAGGTTACAGACATAAAACGTCTGAACAACATGATGAGCGACCATGGCATATACTCGAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATACTCATTAACAGTATATGCTACATCGAGATGGATGCTATTGCGAAACGAGAAGTTGCAGTATTGTATTTGGATGGAATCCCCATGACCCATCATTTGTATGGTAAAGTGACATGCGAACAGGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCGTTGAGTCGGAGCATGATGGTCGATGACGAAACCGCTCAATATTACTTATCTATTTCCAATGGCGATCCTCGAGCAGCTCTTACTGAATTCGCTGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAG

mRNA sequence

ATGGCTGTTACAGACATAAAACGTCTGAACAACATGATGAGCGACCATGGCATATACTCGAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATACTCATTAACAGTATATGCTACATCGAGATGGATGCTATTGCGAAACGAGAAGTTGCAGTATTGTATTTGGATGGAATCCCCATGACCCATCATTTGTATGGTAAAGTGACATGCGAACAGGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCGTTGAGTCGGAGCATGATGGTCGATGACGAAACCGCTCAATATTACTTATCTATTTCCAATGGCGATCCTCGAGCAGCTCTTACTGAATTCGCTGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAG

Coding sequence (CDS)

ATGGCTGTTACAGACATAAAACGTCTGAACAACATGATGAGCGACCATGGCATATACTCGAGAGAAAGATTGTTAATCCCCATTGGCAATCCCAATATACTCATTAACAGTATATGCTACATCGAGATGGATGCTATTGCGAAACGAGAAGTTGCAGTATTGTATTTGGATGGAATCCCCATGACCCATCATTTGTATGGTAAAGTGACATGCGAACAGGGTATGTCTTCTGTTCAAGTGAACAAGCGGGTACTTCATTCGTTGAGTCGGAGCATGATGGTCGATGACGAAACCGCTCAATATTACTTATCTATTTCCAATGGCGATCCTCGAGCAGCTCTTACTGAATTCGCTGAGGACATCAGGTGGGAGAGGCATATGAGCATTGCCTAG

Protein sequence

MAVTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMTHHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIRWERHMSIA

Homology

[Close]

BLAST of Lsi11G005530 vs. ExPASy Swiss-Prot
Match: Q9FZ32 (F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.2e-36
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P  
Sbjct: 95  VMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEGAPKR 154

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
                  T +Q   S    +R++ SL RSM VDD TA YYL+I+ GDPR+AL+EF+ D+R
Sbjct: 155 EQPV-PGTNQQSNLSADGKRRLIESLRRSMQVDDGTALYYLAIAEGDPRSALSEFSADLR 214

Query: 123 WERHMSI 130
           WER   +
Sbjct: 215 WERQAGL 220

[Close]

BLAST of Lsi11G005530 vs. ExPASy TrEMBL
Match: A0A6J1D9A3 (F-box protein At1g55000 OS=Momordica charantia OX=3673 GN=LOC111018786 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.5e-63
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIP T
Sbjct: 142 VMDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPTT 201

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
           HHLYGKVTCEQGMSSVQVNK+VLHSLSRSMMVDDETA+YYLSIS+GDPRAALTEFAEDIR
Sbjct: 202 HHLYGKVTCEQGMSSVQVNKQVLHSLSRSMMVDDETARYYLSISHGDPRAALTEFAEDIR 261

Query: 123 WERHMSIA 131
           WERHMSIA
Sbjct: 262 WERHMSIA 269

[Close]

BLAST of Lsi11G005530 vs. ExPASy TrEMBL
Match: A0A0A0LFS6 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           VTDIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYIEMDAIAKREVAVLYLDGIPMT
Sbjct: 142 VTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYIEMDAIAKREVAVLYLDGIPMT 201

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
            HLYGKVT EQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNG+PRAALTEFAEDIR
Sbjct: 202 QHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGNPRAALTEFAEDIR 261

Query: 123 WERHMSIA 131
           WERHMSIA
Sbjct: 262 WERHMSIA 269

[Close]

BLAST of Lsi11G005530 vs. ExPASy TrEMBL
Match: A0A6J1FH66 (F-box protein At1g55000 OS=Cucurbita moschata OX=3662 GN=LOC111443952 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 7.4e-60
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP T
Sbjct: 143 VIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVATLYLDGIPTT 202

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
           HHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYYLSIS+GDPRAALTEFAEDIR
Sbjct: 203 HHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQYYLSISDGDPRAALTEFAEDIR 262

Query: 123 WERHMSIA 131
           WERHM +A
Sbjct: 263 WERHMGMA 270

[Close]

BLAST of Lsi11G005530 vs. ExPASy TrEMBL
Match: A0A6J1HS58 (F-box protein At1g55000 OS=Cucurbita maxima OX=3661 GN=LOC111465634 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.3e-59
Identity = 117/128 (91.41%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSRER+LIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP T
Sbjct: 143 VIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICYIEMDAIAKREVATLYLDGIPTT 202

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
           HHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYYLSIS+GDPRAALTEFAEDIR
Sbjct: 203 HHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQYYLSISDGDPRAALTEFAEDIR 262

Query: 123 WERHMSIA 131
           WERHM +A
Sbjct: 263 WERHMGMA 270

[Close]

BLAST of Lsi11G005530 vs. ExPASy TrEMBL
Match: A0A7N2L511 (LysM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 7.7e-41
Identity = 89/130 (68.46%), Postives = 104/130 (80.00%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPM- 62
           V DIKRLNNMMSDHGIYSRERLLIPI NP+IL+N  CYIE+D  AKREVAVLYL+G P  
Sbjct: 133 VMDIKRLNNMMSDHGIYSRERLLIPISNPDILVNGACYIELDTYAKREVAVLYLEGGPSG 192

Query: 63  -THHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAED 122
            + H+  K+T EQG       ++VL SL RSM VDD TAQYYLSISNG+PRAAL+EF+ED
Sbjct: 193 NSSHMLNKMTTEQG------KRKVLDSLKRSMQVDDGTAQYYLSISNGNPRAALSEFSED 252

Query: 123 IRWERHMSIA 131
           ++WER MS+A
Sbjct: 253 LKWERQMSLA 256

[Close]

BLAST of Lsi11G005530 vs. NCBI nr
Match: XP_022150720.1 (F-box protein At1g55000 [Momordica charantia])

HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIP T
Sbjct: 142 VMDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPTT 201

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
           HHLYGKVTCEQGMSSVQVNK+VLHSLSRSMMVDDETA+YYLSIS+GDPRAALTEFAEDIR
Sbjct: 202 HHLYGKVTCEQGMSSVQVNKQVLHSLSRSMMVDDETARYYLSISHGDPRAALTEFAEDIR 261

Query: 123 WERHMSIA 131
           WERHMSIA
Sbjct: 262 WERHMSIA 269

[Close]

BLAST of Lsi11G005530 vs. NCBI nr
Match: XP_004139174.1 (F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_023439 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 6.6e-63
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           VTDIKRLNNMMSDHGIYSRERLLIPIGNPN+LINSICYIEMDAIAKREVAVLYLDGIPMT
Sbjct: 142 VTDIKRLNNMMSDHGIYSRERLLIPIGNPNMLINSICYIEMDAIAKREVAVLYLDGIPMT 201

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
            HLYGKVT EQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNG+PRAALTEFAEDIR
Sbjct: 202 QHLYGKVTSEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGNPRAALTEFAEDIR 261

Query: 123 WERHMSIA 131
           WERHMSIA
Sbjct: 262 WERHMSIA 269

[Close]

BLAST of Lsi11G005530 vs. NCBI nr
Match: XP_038877035.1 (F-box protein At1g55000 [Benincasa hispida])

HSP 1 Score: 250.4 bits (638), Expect = 8.7e-63
Identity = 122/128 (95.31%), Postives = 126/128 (98.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           VTDIKRLNNM+SDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIP+T
Sbjct: 142 VTDIKRLNNMISDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPIT 201

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
           HHLYGK TCE+GMSSVQVNKRVLH LSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR
Sbjct: 202 HHLYGKETCERGMSSVQVNKRVLHLLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 261

Query: 123 WERHMSIA 131
           WERH+SIA
Sbjct: 262 WERHLSIA 269

[Close]

BLAST of Lsi11G005530 vs. NCBI nr
Match: XP_022937590.1 (F-box protein At1g55000 [Cucurbita moschata])

HSP 1 Score: 239.6 bits (610), Expect = 1.5e-59
Identity = 118/128 (92.19%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP T
Sbjct: 143 VIDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVATLYLDGIPTT 202

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
           HHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYYLSIS+GDPRAALTEFAEDIR
Sbjct: 203 HHLYGKETNDQGMSSVQVKKRVLHSLSRSMMVDDETAQYYLSISDGDPRAALTEFAEDIR 262

Query: 123 WERHMSIA 131
           WERHM +A
Sbjct: 263 WERHMGMA 270

[Close]

BLAST of Lsi11G005530 vs. NCBI nr
Match: XP_022965884.1 (F-box protein At1g55000 [Cucurbita maxima])

HSP 1 Score: 238.8 bits (608), Expect = 2.6e-59
Identity = 117/128 (91.41%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSRER+LIPIGNPNILINSICYIEMDAIAKREVA LYLDGIP T
Sbjct: 143 VIDIKRLNNMMSDHGIYSRERMLIPIGNPNILINSICYIEMDAIAKREVATLYLDGIPTT 202

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
           HHLYGK T +QGMSSVQV KRVLHSLSRSMMVDDETAQYYLSIS+GDPRAALTEFAEDIR
Sbjct: 203 HHLYGKETDDQGMSSVQVKKRVLHSLSRSMMVDDETAQYYLSISDGDPRAALTEFAEDIR 262

Query: 123 WERHMSIA 131
           WERHM +A
Sbjct: 263 WERHMGMA 270

[Close]

BLAST of Lsi11G005530 vs. TAIR 10
Match: AT1G55000.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-37
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P  
Sbjct: 95  VMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEGAPKR 154

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
                  T +Q   S    +R++ SL RSM VDD TA YYL+I+ GDPR+AL+EF+ D+R
Sbjct: 155 EQPV-PGTNQQSNLSADGKRRLIESLRRSMQVDDGTALYYLAIAEGDPRSALSEFSADLR 214

Query: 123 WERHMSI 130
           WER   +
Sbjct: 215 WERQAGL 220

[Close]

BLAST of Lsi11G005530 vs. TAIR 10
Match: AT1G55000.2 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-37
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P  
Sbjct: 95  VMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEGAPKR 154

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
                  T +Q   S    +R++ SL RSM VDD TA YYL+I+ GDPR+AL+EF+ D+R
Sbjct: 155 EQPV-PGTNQQSNLSADGKRRLIESLRRSMQVDDGTALYYLAIAEGDPRSALSEFSADLR 214

Query: 123 WERHMSI 130
           WER   +
Sbjct: 215 WERQAGL 220

[Close]

BLAST of Lsi11G005530 vs. TAIR 10
Match: AT1G55000.3 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-37
Identity = 76/127 (59.84%), Postives = 92/127 (72.44%), Query Frame = 0


Query: 3   VTDIKRLNNMMSDHGIYSRERLLIPIGNPNILINSICYIEMDAIAKREVAVLYLDGIPMT 62
           V DIKRLNNMMSDHGIYSR+RLLIPI NP IL N+ CY+E+D  AKREVAVLYL+G P  
Sbjct: 95  VMDIKRLNNMMSDHGIYSRDRLLIPISNPEILANTTCYVELDKYAKREVAVLYLEGAPKR 154

Query: 63  HHLYGKVTCEQGMSSVQVNKRVLHSLSRSMMVDDETAQYYLSISNGDPRAALTEFAEDIR 122
                  T +Q   S    +R++ SL RSM VDD TA YYL+I+ GDPR+AL+EF+ D+R
Sbjct: 155 EQPV-PGTNQQSNLSADGKRRLIESLRRSMQVDDGTALYYLAIAEGDPRSALSEFSADLR 214

Query: 123 WERHMSI 130
           WER   +
Sbjct: 215 WERQAGL 220

The following BLAST results are available for this feature:

BLAST of Lsi11G005530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ32	3.2e-36	59.84	F-box protein At1g55000 OS=Arabidopsis thaliana OX=3702 GN=At1g55000 PE=1 SV=1	[more]

BLAST of Lsi11G005530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9A3	2.5e-63	96.09	F-box protein At1g55000 OS=Momordica charantia OX=3673 GN=LOC111018786 PE=4 SV=1	[more]
A0A0A0LFS6	3.2e-63	96.88	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G022840 PE=4 S...	[more]
A0A6J1FH66	7.4e-60	92.19	F-box protein At1g55000 OS=Cucurbita moschata OX=3662 GN=LOC111443952 PE=4 SV=1	[more]
A0A6J1HS58	1.3e-59	91.41	F-box protein At1g55000 OS=Cucurbita maxima OX=3661 GN=LOC111465634 PE=4 SV=1	[more]
A0A7N2L511	7.7e-41	68.46	LysM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Lsi11G005530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150720.1	5.1e-63	96.09	F-box protein At1g55000 [Momordica charantia]	[more]
XP_004139174.1	6.6e-63	96.88	F-box protein At1g55000 [Cucumis sativus] >KGN60915.1 hypothetical protein Csa_0...	[more]
XP_038877035.1	8.7e-63	95.31	F-box protein At1g55000 [Benincasa hispida]	[more]
XP_022937590.1	1.5e-59	92.19	F-box protein At1g55000 [Cucurbita moschata]	[more]
XP_022965884.1	2.6e-59	91.41	F-box protein At1g55000 [Cucurbita maxima]	[more]

BLAST of Lsi11G005530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55000.1	2.3e-37	59.84	peptidoglycan-binding LysM domain-containing protein	[more]
AT1G55000.2	2.3e-37	59.84	peptidoglycan-binding LysM domain-containing protein	[more]
AT1G55000.3	2.3e-37	59.84	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR20932:SF8	LD22649P	coord: 3..129
IPR045030	LysM and putative peptidoglycan-binding domain-containing protein 1-4	PANTHER	PTHR20932	LOC443603 PROTEIN-RELATED	coord: 3..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G005530.1	Lsi11G005530.1	mRNA