Lsi11G005390 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G005390
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Locationchr11: 5640017 .. 5640499 (+)
RNA-Seq ExpressionLsi11G005390
SyntenyLsi11G005390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCAGTAAAAGGGGCTTACAACTTAGAGCTTCTTCAATAACCTTCTCAATCTTTATTGCTTGAGCATACTTGACTTGTACAGGCAGAAAAGCTAGGCAGTTCTTCATGAGCAGAGAAAGAGAAAGTTGGTTTCAAAACAAGCTTATTCATAACTTTGGCCTGTAGACAGCAATTTCTCATGATTCTGGTTTGGTTCATTTCTTGGGAATATTAGAGAGGAATATGAATAAAGTAGCTTTAATCTATTTTTATTCTTTCCTTTCAGGTATAGTCACCAAGGACAAATATTTAATGTTATTTGGGTCCATTTGGGCACAATTATTCAAGCTTTCAAATCACAATGGAAAAGTGCTAGGCATTTGGAGCATTCTTCTAAGAAACCTTATGGGGGGAAAAAGTATCAAATACACACTGAGGTATATCCAGCACAAAGAGAGAAAGAAACAGAACATAGAGATTCCATTCCATCAGAATACTAA

mRNA sequence

ATGCACCAGTATAGTCACCAAGGACAAATATTTAATGTTATTTGGGTCCATTTGGGCACAATTATTCAAGCTTTCAAATCACAATGGAAAAGTGCTAGGCATTTGGAGCATTCTTCTAAGAAACCTTATGGGGGGAAAAAGTATCAAATACACACTGAGGTATATCCAGCACAAAGAGAGAAAGAAACAGAACATAGAGATTCCATTCCATCAGAATACTAA

Coding sequence (CDS)

ATGCACCAGTATAGTCACCAAGGACAAATATTTAATGTTATTTGGGTCCATTTGGGCACAATTATTCAAGCTTTCAAATCACAATGGAAAAGTGCTAGGCATTTGGAGCATTCTTCTAAGAAACCTTATGGGGGGAAAAAGTATCAAATACACACTGAGGTATATCCAGCACAAAGAGAGAAAGAAACAGAACATAGAGATTCCATTCCATCAGAATACTAA

Protein sequence

MHQYSHQGQIFNVIWVHLGTIIQAFKSQWKSARHLEHSSKKPYGGKKYQIHTEVYPAQREKETEHRDSIPSEY
Homology
[Close]
BLAST of Lsi11G005390 vs. ExPASy TrEMBL
Match: A6YTD2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 4   YSHQGQIFNVIWVHLGTIIQAFKSQWKSARHLEHSSKKPYGGKKYQIHTEVY 56
           + HQGQIFNVIWVHLGTIIQAFKSQWKS RHLEHSSKKP+ GKKY I TE Y
Sbjct: 84  HHHQGQIFNVIWVHLGTIIQAFKSQWKSIRHLEHSSKKPHRGKKYHILTEDY 135

[Close]
BLAST of Lsi11G005390 vs. NCBI nr
Match: ABR67415.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 44/52 (84.62%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 4   YSHQGQIFNVIWVHLGTIIQAFKSQWKSARHLEHSSKKPYGGKKYQIHTEVY 56
           + HQGQIFNVIWVHLGTIIQAFKSQWKS RHLEHSSKKP+ GKKY I TE Y
Sbjct: 84  HHHQGQIFNVIWVHLGTIIQAFKSQWKSIRHLEHSSKKPHRGKKYHILTEDY 135

The following BLAST results are available for this feature:
BLAST of Lsi11G005390 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G005390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A6YTD22.8e-1684.62Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
BLAST of Lsi11G005390 vs. NCBI nr
Match NameE-valueIdentityDescription
ABR67415.15.8e-1684.62hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of Lsi11G005390 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G005390.1Lsi11G005390.1mRNA