Lsi11G005160 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G005160
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTMV resistance protein N-like
Locationchr11: 5445300 .. 5447236 (+)
RNA-Seq ExpressionLsi11G005160
SyntenyLsi11G005160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGCTTACATTTTTTTTTAAAAAAATCACAAATATGTAGTTTTGTAATAATAATATTTGAATATAATGTTTTGGAATATAACAAATTGATAATATGATAATTTATTTTTAAAATTAGTAAATAATTGGTTAACTTAAACAATATTAATAACTAAGACATTTATTTTTCTTCAATATGGGGTAGGGGGAATTGAATGAGTATTGTATTTTAAACAATATTAATAACTAAACTCCTTTTCCTTTTGGTTTCTTTTCCATGTGTGTTTAGGATTGTGAAAGGTTGAAGCATGTTAATCTTAGCTACTCTACTTTATTAGAGCAAATTCCTCATTTCTCTGCGGCATCAAACCTTGAAGAATTGTATCTCAGTGATTGCACAAATTTAAAAACAATAGATAAGTCTGTTTTTTTCTCTTGATAAGCTTACTATCCTAAACCTTGATGGCTGTTCTAACCTTAAAAAGCTTCCAACAACCTACTTCATGTTAAGGTCTCTTAAACATTTGAAGCTCTCTTACTGTAAAAAACTTGAGAAAATTCCAGATTTCTCCTTAGCTTTAAACCTTGAGAGTTTATATCTTGAAGAATGCACAAATTTAAAAATGATTCATGAGTCTATTGGATCTTTGGATAAGCTTGTTACCTTGGTTCTTAGACGGTGCACTAATCTTGCAAAGCTTCCAAGCCATCTCAGGTTAAAGTCCCTTCAATATTTAGAACTTTCTGGGTGTCCTAAGCTTCAAAACTTCCCAACAATTGCTGAGAACTTGAAATCTTTAACGTTGTTGGATTTGGATTTTACTGCCACAAAGGAGCTACCTTCATCAATTGGATATCTTACTCAGCTCTCTCGATTAAACCTTAACGGTTGCACAAACCTCATCTCCCTTCCCAATACAATGTATTTGTTAAGGAGTCTTGAGAATCTTTTTCTTAGAGGGTGTTCTAGATTTGAAATGGTTTCCCATAAATGGGACCAAATCATCCAACCAGTATGCTCTTCTTCAAAGATGATGAAAACAACTTCATGGAGCTCAGAATTTCCCCATTTACTAATTCCAAAAGAAATTTCATGTTCCAAGCTCACATTTTTGGATCTTCAATCTTGCAACATATCAAATGCAGATTTTTTGGAAACTTTATGTAATGGAGCCCCTCTCTTATCTGATCTACGCTTGTCGGAAAACAAATTCTTTAGTTTACCATCATGTCTCCATAAGTTAATGTTCCTATGGAATCTTGAATTAAGGAATTGTAAGTTTCTTCAAGAAATTCCAAACCTTCCTGAGAATATACAAAAAATGGATGCCACTGTTTGCGAATCATTGGCTAGAAGTCCGGAGAACATGGTGGATATAATATCAAGAAAACAGGTTCGTCTCTTTCCATTCAATTTGTTTCTATCTTGTAAACAATTTTATGCATATGAATGTCTTATTCTACAGGACCTTACATTGGGTGAGATTTCAAGAGAGTTCTTACTAACGGGCATTGAGATTCCAGAATGGTTCAGCTATAAGACTACAACAAATTCGGTGAGTGCTAGCTTTCGTCACTATCCAGATATGGAAGGAACTTTGGCTGCCTGTGTTAGTTTCAAAGTGAATGGAGATTCATCTAAAAGGGGGCCCTAATTTCATGCAATATATTCATCCGCAATACACTCCATTGTTCTTTTTCAAGATCATTTCTTCCATCAAAATCAGAATATATGTGGTTAGTAACAACTTCTTCTCTAGCATGGGGATCCATGGAGGTGCAGGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACATGATGAGGTTAATATAACTATAAGAAGCTGTGGTCTCCATGTCACTGAAGAGATCCATGGGATACAAACGGATTCTAAGTGGCCGGTGGTAAATTATGCTGATTTTTATCAACCGGAGAAATTGCCAACTTTGCAA

mRNA sequence

ATGGCATGGGGATCCATGGAGGTGCAGGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACATGATGAGGTTAATATAACTATAAGAAGCTGTGGTCTCCATGTCACTGAAGAGATCCATGGGATACAAACGGATTCTAAGTGGCCGGTGGTAAATTATGCTGATTTTTATCAACCGGAGAAATTGCCAACTTTGCAA

Coding sequence (CDS)

ATGGCATGGGGATCCATGGAGGTGCAGGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACATGATGAGGTTAATATAACTATAAGAAGCTGTGGTCTCCATGTCACTGAAGAGATCCATGGGATACAAACGGATTCTAAGTGGCCGGTGGTAAATTATGCTGATTTTTATCAACCGGAGAAATTGCCAACTTTGCAA

Protein sequence

MAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFYQPEKLPTLQ
Homology
[Close]
BLAST of Lsi11G005160 vs. ExPASy TrEMBL
Match: A0A5D3D473 (TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00600 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.4e-24
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1   MAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFYQPE 60
           +A  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV +ADFYQPE
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180

Query: 61  KLPTL 66
           KLP L
Sbjct: 181 KLPDL 185

[Close]
BLAST of Lsi11G005160 vs. ExPASy TrEMBL
Match: A0A5A7V617 (TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002010 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.4e-24
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1   MAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFYQPE 60
           +A  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV +ADFYQPE
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180

Query: 61  KLPTL 66
           KLP L
Sbjct: 181 KLPDL 185

[Close]
BLAST of Lsi11G005160 vs. ExPASy TrEMBL
Match: A0A1S3BZ02 (LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=3656 GN=LOC103494972 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1   MAWGSMEVQDWNKVLVWFE---AHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFY 60
           +AWGSMEVQDWNKVLVWFE   A DEV ++IR CG+HVTEE+HGIQTD KWPVVNYADFY
Sbjct: 713 LAWGSMEVQDWNKVLVWFEVVDADDEVKVSIRRCGVHVTEELHGIQTDVKWPVVNYADFY 772

Query: 61  QPEKLPTL 66
           Q EKL  L
Sbjct: 773 QVEKLQNL 780

[Close]
BLAST of Lsi11G005160 vs. ExPASy TrEMBL
Match: A0A1S3C088 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-22
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1    MAWGSMEVQDWNKVLVWF---EAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFY 60
            +AWGSMEV DWNKVLVWF   EAH EVN TI  CG+HVTEE+HGIQ D KWP+VNYADFY
Sbjct: 1126 LAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWPMVNYADFY 1185

Query: 61   QPEKLPTL 66
            Q EKL +L
Sbjct: 1186 QLEKLQSL 1193

[Close]
BLAST of Lsi11G005160 vs. ExPASy TrEMBL
Match: A0A1S3C093 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-22
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1    MAWGSMEVQDWNKVLVWF---EAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFY 60
            +AWGSMEV DWNKVLVWF   EAH EVN TI  CG+HVTEE+HGIQ D KWP+VNYADFY
Sbjct: 939  LAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWPMVNYADFY 998

Query: 61   QPEKLPTL 66
            Q EKL +L
Sbjct: 999  QLEKLQSL 1006

[Close]
BLAST of Lsi11G005160 vs. NCBI nr
Match: KAA0063682.1 (TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1   MAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFYQPE 60
           +A  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV +ADFYQPE
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180

Query: 61  KLPTL 66
           KLP L
Sbjct: 181 KLPDL 185

[Close]
BLAST of Lsi11G005160 vs. NCBI nr
Match: TYK18345.1 (TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 1   MAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFYQPE 60
           +A  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV +ADFYQPE
Sbjct: 121 LARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVTFADFYQPE 180

Query: 61  KLPTL 66
           KLP L
Sbjct: 181 KLPDL 185

[Close]
BLAST of Lsi11G005160 vs. NCBI nr
Match: XP_008454602.1 (PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1   MAWGSMEVQDWNKVLVWFE---AHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFY 60
           +AWGSMEVQDWNKVLVWFE   A DEV ++IR CG+HVTEE+HGIQTD KWPVVNYADFY
Sbjct: 713 LAWGSMEVQDWNKVLVWFEVVDADDEVKVSIRRCGVHVTEELHGIQTDVKWPVVNYADFY 772

Query: 61  QPEKLPTL 66
           Q EKL  L
Sbjct: 773 QVEKLQNL 780

[Close]
BLAST of Lsi11G005160 vs. NCBI nr
Match: XP_008455151.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 8.4e-22
Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1    MAWGSMEVQDWNKVLVWF---EAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFY 60
            +AWGSMEV DWNKVLVWF   EAH EVN TI  CG+HVTEE+HGIQ D KWP+VNYADFY
Sbjct: 1126 LAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWPMVNYADFY 1185

Query: 61   QPEKLPTL 66
            Q EKL +L
Sbjct: 1186 QLEKLQSL 1193

[Close]
BLAST of Lsi11G005160 vs. NCBI nr
Match: XP_038877835.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 113.2 bits (282), Expect = 8.4e-22
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 1    MAWGSMEVQDWNKVLVWFEAHD---EVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFY 60
            +AWGSMEVQDWNKVLV FE H+   EVN+TIRS G+HVTEE+HG+QTD KWPVVNYADFY
Sbjct: 1098 LAWGSMEVQDWNKVLVRFEVHEEHVEVNVTIRSYGIHVTEELHGMQTDLKWPVVNYADFY 1157

Query: 61   QPEKLPTL 66
            Q EKL  L
Sbjct: 1158 QMEKLQNL 1165

The following BLAST results are available for this feature:
BLAST of Lsi11G005160 vs.
Match NameE-valueIdentityDescription
BLAST of Lsi11G005160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D4737.4e-2478.46TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V6177.4e-2478.46TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S3BZ022.2e-2377.94LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=365... [more]
A0A1S3C0884.1e-2275.00TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388... [more]
A0A1S3C0934.1e-2275.00TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495388... [more]
BLAST of Lsi11G005160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0063682.11.5e-2378.46TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa][more]
TYK18345.11.5e-2378.46TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa][more]
XP_008454602.14.5e-2377.94PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis me... [more]
XP_008455151.18.4e-2275.00PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo][more]
XP_038877835.18.4e-2276.47LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida][more]
BLAST of Lsi11G005160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G005160.1Lsi11G005160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006952 defense response
biological_process GO:0007165 signal transduction
molecular_function GO:0043531 ADP binding
molecular_function GO:0003953 NAD+ nucleosidase activity