Lsi11G004810 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G004810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	ATP-dependent RNA helicase, putative
Location	chr11: 5087161 .. 5088720 (+)
RNA-Seq Expression	Lsi11G004810
Synteny	Lsi11G004810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGTATGATCTTCTAGTATAGTATCCTCTTAGTATTATCTTTGTTAAATTATTGTCTTCAGTTGCGGTTGCTATTGTTGTCCCTACGTACCTCTATTCTTTTTTTTTTAAAAAAAAAAACAGTTAACATATTTGGAGTGGATATGGTTGCTCTATGGTGGAGGTGGTGCTTTTAGGAGGAGGACAAAGTTTAGTGGCATAGTAGTTTCTTTATTGTTTTGTGGAGAATTTGGCTTAACAAGATCTTTAGAGAGGTGGAGAGATCGTGTATGTGGGGAGGTTTAGAAGGTTGTTAGGTTTAATGTTTTCATTGTGAGCATTGTTTTCACAATCTTTTTGTGAATATGAGCTTGGTCCTATTTATTAGATTAGAGTTCTTTTCGGTAGTTTAGGTTTGGACCCCCTTCAGTTGGCCTTTTACTGCATTCCTTCATTTCTCAAAAGCTTGGTTCCTAAAAAAGGAAAGAAAAAACAGATAGTTGACATGTAGGAATGGAATTTAGTACAATTATGTTTTCTCTTAAAAGAATCGGGCTGAACTAGACTTAGGCATCATCATGTTAAAAAATTTAGAAAATGTAACTGAATGAATTTTCGTTGAGATGCACAATTATGTATGTGGTAGCAACTGACTATACTTCTGTCCATTGGGGGCTTGTGAAATCAACTTCTAAGATTCTTCGCTTCATCTTGTACTTAGAGTCGAGACACCAGTAGAGGGAAATTCTGTATCTTGGATTCTAGGAAATTTTTAGCTAGCGTTTTAATTTTCTCTACTACTCTTTGATCAGTTTTGCTCATCAATCATCATTAGATCTTACTACTATTGATCTCTTGTATGTTAACATCTTACTGTTCCTATGAATCTCCTCGCTTTCTAACTCACGCACGTTTGCTTAATTTTAGGTACAAATTGGATGTGGTGAGTGCTGGCAAGAACTTCACACAGATAAGGAAGGCAATTACAGCAGGGTTCTTTTTCCATGCAGCCAGAAAGGATCCACAAGAGGGTTATCGGACCCTAGTCGAGAACCAACCGGTTTATATCCATCCGAGCAGTGCGTTATTCCAAAGACAACCCGACTGGGTCATATACCACGAGCTGGTCATGACAACAAAAGAATACATGCGTGAAGTGACAGTCATAGATCCCAAATGGCTTGTTGAATTAGCTCCAAGATTCTTCAAAGTTGCAGACCCTACGAAGATGAGTAAGCGAAAGCGACAAGAGCGGATTGAACCACTCTATGACAGATATCACGAACCAAACTCTTGGCGTTTGAGTAAGAGACGAGCTTAATCAATGTGTTTTTCTTTTTTCTGTGCTATATTTACCTGACTATGATGTAGGTTTGGAGGCTTGCCATAAAATGTATATATCCTGTTGTATAATCTCTCCTGAGGGTGTAAAGCCATTAAAAGACCTATGCATTTATCTATCAGAAAAGTTTTGTCTCCCTCCACTGCCGTTGGATCATTGCGTTATGTTATTTGATTTGATAATTCATTTTGCCACTACGGGGACTTTATTGATAGAAGTCATTTTTATCTCTCA

mRNA sequence

ATGGACAAGTACAAATTGGATGTGGTGAGTGCTGGCAAGAACTTCACACAGATAAGGAAGGCAATTACAGCAGGGTTCTTTTTCCATGCAGCCAGAAAGGATCCACAAGAGGGTTATCGGACCCTAGTCGAGAACCAACCGGTTTATATCCATCCGAGCAGTGCGTTATTCCAAAGACAACCCGACTGGGTCATATACCACGAGCTGGTCATGACAACAAAAGAATACATGCGTGAAGTGACAGTCATAGATCCCAAATGGCTTGTTGAATTAGCTCCAAGATTCTTCAAAGTTGCAGACCCTACGAAGATGAGTAAGCGAAAGCGACAAGAGCGGATTGAACCACTCTATGACAGATATCACGAACCAAACTCTTGGCGTTTGAGTAAGAGACGAGCTTAATCAATGTGTTTTTCTTTTTTCTGTGCTATATTTACCTGACTATGATGTAGGTTTGGAGGCTTGCCATAAAATGTATATATCCTGTTGTATAATCTCTCCTGAGGGTGTAAAGCCATTAAAAGACCTATGCATTTATCTATCAGAAAAGTTTTGTCTCCCTCCACTGCCGTTGGATCATTGCGTTATGTTATTTGATTTGATAATTCATTTTGCCACTACGGGGACTTTATTGATAGAAGTCATTTTTATCTCTCA

Coding sequence (CDS)

ATGGACAAGTACAAATTGGATGTGGTGAGTGCTGGCAAGAACTTCACACAGATAAGGAAGGCAATTACAGCAGGGTTCTTTTTCCATGCAGCCAGAAAGGATCCACAAGAGGGTTATCGGACCCTAGTCGAGAACCAACCGGTTTATATCCATCCGAGCAGTGCGTTATTCCAAAGACAACCCGACTGGGTCATATACCACGAGCTGGTCATGACAACAAAAGAATACATGCGTGAAGTGACAGTCATAGATCCCAAATGGCTTGTTGAATTAGCTCCAAGATTCTTCAAAGTTGCAGACCCTACGAAGATGAGTAAGCGAAAGCGACAAGAGCGGATTGAACCACTCTATGACAGATATCACGAACCAAACTCTTGGCGTTTGAGTAAGAGACGAGCTTAA

Protein sequence

MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

Homology

[Close]

BLAST of Lsi11G004810 vs. ExPASy Swiss-Prot
Match: Q38953 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana OX=3702 GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-71
Identity = 128/133 (96.24%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVV+AGKNFT+IRKAITAGFFFH ARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1036 MDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1095

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYH+LVMTTKEYMREVTVIDPKWLVELAPRFFKV+DPTKMSKRKRQERIEPLYDRY
Sbjct: 1096 PDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRY 1155

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1156 HEPNSWRLSKRRA 1168

[Close]

BLAST of Lsi11G004810 vs. ExPASy Swiss-Prot
Match: Q54F05 (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum OX=44689 GN=dhx8 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.8e-57
Identity = 98/132 (74.24%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MD+YKLD++SAG+N+T+I+KAI +GFF +A++KDP EGY+TLVE QPVYIHPSS LF R 
Sbjct: 1029 MDRYKLDIISAGRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRN 1088

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREV  IDPKWLVELAP+FFK +DP K+SKRKR+E+IEPLYD+Y
Sbjct: 1089 PDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKFFKTSDPNKISKRKRKEKIEPLYDKY 1148

Query: 121  HEPNSWRLSKRR 133
            ++PN+WR SKR+
Sbjct: 1149 NDPNAWRPSKRK 1160

[Close]

BLAST of Lsi11G004810 vs. ExPASy Swiss-Prot
Match: Q14562 (ATP-dependent RNA helicase DHX8 OS=Homo sapiens OX=9606 GN=DHX8 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-54
Identity = 93/130 (71.54%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MD++KLDVVS GK+  +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQ
Sbjct: 1086 MDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQ 1145

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            P+WV+YHELV+TTKEYMREVT IDP+WLVE AP FFKV+DPTK+SK+K+Q+R+EPLY+RY
Sbjct: 1146 PEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRY 1205

Query: 121  HEPNSWRLSK 131
             EPN+WR+S+
Sbjct: 1206 EEPNAWRISR 1215

[Close]

BLAST of Lsi11G004810 vs. ExPASy Swiss-Prot
Match: A2A4P0 (ATP-dependent RNA helicase DHX8 OS=Mus musculus OX=10090 GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-54
Identity = 93/130 (71.54%), Postives = 118/130 (90.77%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MD++KLDVVS GK+  +++KAI +GFF +AA+KDPQEGYRTL++ Q VYIHPSSALF RQ
Sbjct: 1110 MDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQ 1169

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            P+WV+YHELV+TTKEYMREVT IDP+WLVE AP FFKV+DPTK+SK+K+Q+R+EPLY+RY
Sbjct: 1170 PEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRY 1229

Query: 121  HEPNSWRLSK 131
             EPN+WR+S+
Sbjct: 1230 EEPNAWRISR 1239

[Close]

BLAST of Lsi11G004810 vs. ExPASy Swiss-Prot
Match: A1Z9L3 (ATP-dependent RNA helicase DHX8 OS=Drosophila melanogaster OX=7227 GN=pea PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.7e-53
Identity = 96/132 (72.73%), Postives = 117/132 (88.64%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MD++KLDVVSAGKN  +I+KAI +GFF +AA+KDPQEGYRTLV++Q VYIHPSSALF RQ
Sbjct: 1107 MDRHKLDVVSAGKNSVRIQKAICSGFFRNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQ 1166

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            P+WVIYHELV TTKEYMREVT IDPKWLVE AP FF+ +DPTK+SK K+ +R+EPLY++Y
Sbjct: 1167 PEWVIYHELVQTTKEYMREVTTIDPKWLVEFAPSFFRFSDPTKLSKFKKNQRLEPLYNKY 1226

Query: 121  HEPNSWRLSKRR 133
             EPN+WR+S+ R
Sbjct: 1227 EEPNAWRISRVR 1238

[Close]

BLAST of Lsi11G004810 vs. ExPASy TrEMBL
Match: A0A6J1CMK5 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Momordica charantia OX=3673 GN=LOC111013015 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.3e-71
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1083 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1142

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1143 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 1202

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1203 HEPNSWRLSKRRA 1215

[Close]

BLAST of Lsi11G004810 vs. ExPASy TrEMBL
Match: A0A5A7V8X9 (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001090 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.5e-71
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1093 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1152

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKV+DPTKMSKRKRQERIEPLYDRY
Sbjct: 1153 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRY 1212

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1213 HEPNSWRLSKRRA 1225

[Close]

BLAST of Lsi11G004810 vs. ExPASy TrEMBL
Match: A0A6J1KEH4 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucurbita maxima OX=3661 GN=LOC111493616 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.5e-71
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1099 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1158

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1159 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQERIEPLYDRY 1218

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1219 HEPNSWRLSKRRA 1231

[Close]

BLAST of Lsi11G004810 vs. ExPASy TrEMBL
Match: A0A6J1HLZ3 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucurbita maxima OX=3661 GN=LOC111465413 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.5e-71
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1098 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1157

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1158 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQERIEPLYDRY 1217

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1218 HEPNSWRLSKRRA 1230

[Close]

BLAST of Lsi11G004810 vs. ExPASy TrEMBL
Match: A0A0A0LG89 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013240 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.5e-71
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1086 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1145

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKV+DPTKMSKRKRQERIEPLYDRY
Sbjct: 1146 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRY 1205

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1206 HEPNSWRLSKRRA 1218

[Close]

BLAST of Lsi11G004810 vs. NCBI nr
Match: XP_038890443.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Benincasa hispida] >XP_038890444.1 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Benincasa hispida])

HSP 1 Score: 276.9 bits (707), Expect = 8.8e-71
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1092 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1151

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1152 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 1211

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1212 HEPNSWRLSKRRA 1224

[Close]

BLAST of Lsi11G004810 vs. NCBI nr
Match: XP_022143025.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Momordica charantia])

HSP 1 Score: 276.9 bits (707), Expect = 8.8e-71
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1083 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1142

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1143 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 1202

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1203 HEPNSWRLSKRRA 1215

[Close]

BLAST of Lsi11G004810 vs. NCBI nr
Match: XP_023537932.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1101 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1160

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1161 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQERIEPLYDRY 1220

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1221 HEPNSWRLSKRRA 1233

[Close]

BLAST of Lsi11G004810 vs. NCBI nr
Match: XP_022946177.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita moschata] >KAG7030280.1 ATP-dependent RNA helicase dhx8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1087 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1146

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1147 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQERIEPLYDRY 1206

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1207 HEPNSWRLSKRRA 1219

[Close]

BLAST of Lsi11G004810 vs. NCBI nr
Match: XP_022965541.1 (probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita maxima])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 132/133 (99.25%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1098 MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1157

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPR+FKVADPTKMSKRKRQERIEPLYDRY
Sbjct: 1158 PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRYFKVADPTKMSKRKRQERIEPLYDRY 1217

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1218 HEPNSWRLSKRRA 1230

[Close]

BLAST of Lsi11G004810 vs. TAIR 10
Match: AT3G26560.1 (ATP-dependent RNA helicase, putative )

HSP 1 Score: 270.4 bits (690), Expect = 7.7e-73
Identity = 128/133 (96.24%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            MDKYKLDVV+AGKNFT+IRKAITAGFFFH ARKDPQEGYRTLVENQPVYIHPSSALFQRQ
Sbjct: 1036 MDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQ 1095

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRY 120
            PDWVIYH+LVMTTKEYMREVTVIDPKWLVELAPRFFKV+DPTKMSKRKRQERIEPLYDRY
Sbjct: 1096 PDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRY 1155

Query: 121  HEPNSWRLSKRRA 134
            HEPNSWRLSKRRA
Sbjct: 1156 HEPNSWRLSKRRA 1168

[Close]

BLAST of Lsi11G004810 vs. TAIR 10
Match: AT2G35340.1 (helicase domain-containing protein )

HSP 1 Score: 107.8 bits (268), Expect = 6.6e-24
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            +++ ++DV S       IRK+I AGFF H A+      YRT+   Q V+IHP+S L Q  
Sbjct: 927  LERVEIDVSSNANELDSIRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPASGLSQVL 986

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRK 109
            P WV+YH+LV+T+KEYMR+VT + P+WL+E+AP ++++ D    + +K
Sbjct: 987  PRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPHYYQLKDVEDATSKK 1034

[Close]

BLAST of Lsi11G004810 vs. TAIR 10
Match: AT1G32490.1 (RNA helicase family protein )

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-24
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            +++ ++D+ S       +RK+I AGFF H A+      YRT+   Q V+IHP+S L Q  
Sbjct: 927  LERVEIDISSNLNELDSVRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVL 986

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRK 109
            P WV+YHELV+T+KEYMR+VT + P+WL+ELAP ++++ D    + +K
Sbjct: 987  PRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQLKDVEDAASKK 1034

[Close]

BLAST of Lsi11G004810 vs. TAIR 10
Match: AT1G32490.2 (RNA helicase family protein )

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-24
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 1    MDKYKLDVVSAGKNFTQIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQ 60
            +++ ++D+ S       +RK+I AGFF H A+      YRT+   Q V+IHP+S L Q  
Sbjct: 917  LERVEIDISSNLNELDSVRKSIVAGFFPHTAKLQKNGSYRTVKHPQTVHIHPNSGLSQVL 976

Query: 61   PDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVADPTKMSKRK 109
            P WV+YHELV+T+KEYMR+VT + P+WL+ELAP ++++ D    + +K
Sbjct: 977  PRWVVYHELVLTSKEYMRQVTELKPEWLIELAPHYYQLKDVEDAASKK 1024

[Close]

BLAST of Lsi11G004810 vs. TAIR 10
Match: AT4G18465.1 (RNA helicase family protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-19
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 18  IRKAITAGFFFHAARKDPQEG--YRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKE 77
           +RKA+TAGFF +A R +P     Y+T+  ++ VYIHPSS LF+  P WV+Y  +V T ++
Sbjct: 606 VRKAVTAGFFANACRLEPHSNGVYKTIRGSEEVYIHPSSVLFRVNPKWVVYQSIVSTERQ 665

Query: 78  YMREVTVIDPKWLVELAPRFFK 98
           YMR V  I+P WL E+AP F++
Sbjct: 666 YMRNVVTINPSWLTEVAPHFYQ 687

The following BLAST results are available for this feature:

BLAST of Lsi11G004810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38953	1.1e-71	96.24	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsi...	[more]
Q54F05	5.8e-57	74.24	ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum OX=44689 GN=dhx8 PE=...	[more]
Q14562	3.5e-54	71.54	ATP-dependent RNA helicase DHX8 OS=Homo sapiens OX=9606 GN=DHX8 PE=1 SV=1	[more]
A2A4P0	3.5e-54	71.54	ATP-dependent RNA helicase DHX8 OS=Mus musculus OX=10090 GN=Dhx8 PE=2 SV=1	[more]
A1Z9L3	1.7e-53	72.73	ATP-dependent RNA helicase DHX8 OS=Drosophila melanogaster OX=7227 GN=pea PE=1 S...	[more]

BLAST of Lsi11G004810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CMK5	4.3e-71	100.00	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Momordica ...	[more]
A0A5A7V8X9	9.5e-71	99.25	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucumis me...	[more]
A0A6J1KEH4	9.5e-71	99.25	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucurbita ...	[more]
A0A6J1HLZ3	9.5e-71	99.25	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Cucurbita ...	[more]
A0A0A0LG89	9.5e-71	99.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013240 PE=4 SV=1	[more]

BLAST of Lsi11G004810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890443.1	8.8e-71	100.00	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Benincasa hi...	[more]
XP_022143025.1	8.8e-71	100.00	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Momordica ch...	[more]
XP_023537932.1	2.0e-70	99.25	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita pe...	[more]
XP_022946177.1	2.0e-70	99.25	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita mo...	[more]
XP_022965541.1	2.0e-70	99.25	probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Cucurbita ma...	[more]

BLAST of Lsi11G004810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26560.1	7.7e-73	96.24	ATP-dependent RNA helicase, putative	[more]
AT2G35340.1	6.6e-24	43.52	helicase domain-containing protein	[more]
AT1G32490.1	8.7e-24	43.52	RNA helicase family protein	[more]
AT1G32490.2	8.7e-24	43.52	RNA helicase family protein	[more]
AT4G18465.1	2.9e-19	48.78	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011709	Domain of unknown function DUF1605	PFAM	PF07717	OB_NTP_bind	coord: 18..93 e-value: 1.6E-26 score: 92.5
None	No IPR available	PANTHER	PTHR18934:SF230	SUBFAMILY NOT NAMED	coord: 1..133
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004810.1	Lsi11G004810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000390	spliceosomal complex disassembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity