Lsi11G004750 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G004750
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	WD repeat-containing protein 48
Location	chr11: 5015891 .. 5018798 (+)
RNA-Seq Expression	Lsi11G004750
Synteny	Lsi11G004750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGTGGGTGATTTACAAGGTCTGCCAACCGTTTGTGTTTTTAATTTATATCAGGACCTAGTCTTTTGCGTTAATCTGCTACAGGATTGCCAACACAGAGTTGCATCCAGTCACCTGACAATCTACTGTGTAATTTCTAGTGCACTTGATTACTTGTTGCTGAAATTTAGTTTACGTACGTCTGTTGAAGAATTTTAAATATGAAATTGTGGTTATAAAATACAGGTCGATTGAATGTGATATTGAACCCATTTTCCTTTTAATAATGTAGGTTGTAAATTATGTCATAGAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAAATCTTATGCAATAATCAGGTAAATGAAACTACATTGTCTCGTCCGTGTGGAGGAATATACAATGTTGCCTTTTTGCTAGGCGTTTAGGCACTCAAAAGAGTTGCAGTACTGAGTTGTATTAGAGGTTTCTTATTTAACTCACGTTGAATTATAATTACTGTTTTGTTTCATTTTCCATTTTTTCTTACTTTACACCCTCCTTTTAAAATTGGAAGCACAAACTTTTCATAGAAATAATTTTATCAAAAAACTTTTCATAGAAATAATGAAAAGAGATTAGTGCTCAGACTACAAGGATACTAAAAGTAATGAAAATAAGCCAAACTAAACCATAGACAAAGTACGGCAAACAAAGAACTATGCTGGAAAAATAAAGGCCTTCCAATTTAAACCTTACTTTAACTGTTAAGATACTCTGGTAACTAGATTTGAATCTAGATGGCGCAGGCCATTTTTCATAATCATCTCATCTGCATTGTTTGTTTTGCCGCCAAGTTTCTTTCATAATCATCTGCATTGCTTGTTTTGCATATTCATCCTTTGTTTTTAATCAAAGGAAAATTATCTCTTTCTGAAGTGCAGAATGAATGAATTTGGGTCTCTTTTGAAAACTAGATAAAATTTTGCTTCTAGTCTAGTCAGTTTTACCTTCGTTTCTCATCTCTCTGAATGAATGTGGGTGCTGAAGTTCATTTTTGCTGTTTCATGTATCTAAGTACCTTTGTATTTTTGTATCTAGTATCTATTTATATAGCTTACTTGCTCAAAGAAGGAATGCATTAAAATCTTTATATGTTTTGGGATCTTACAAAGTGGAAAAGCTGAGATTGTATTGGGTTTGGAGCTTTTATGCTCATTTTGTAACGCTTAACAACTGATCCTGGACAACATCATACAGTCAATAATTAAGGGCTTCTGGCTTGTTTTTTCAATCTTTCAGAGTCTTGGCATTAAATTCCGTACACACGGTTTGTGGTATTTTTTGGTGTTGTATTTAGCAGCTCTTCTTACACACATTTTTTTTTTGGTTACATTACAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTTCAAGGCAGGTGAACGCATGCAATAGGTTAGTATCGCTCTCTTGTATTGTGCATAAAGTTCCTCTTCCTCATGAAAGTTCTGAATAGGCAAAAATATTGGTTTGAAATGAAAGTCTGTTTCTCATTAAAAAAAAAAAAATTGCCATCTTCATGGCTGTTTTCATGGGACCTTGGAGGTGTTGAGATACTTTAGGAATAGGCGAAAATACCTTTATACTATTAAGTATTACTGATGACAATTGATTGACAAATAACTTCCTATTATTTAGTTTTTGAGATATATTTGTTTGCTATGCTTTCCTTGTTTCTCTGTCTTTGAACTAATAGAGTCATTATATAAAAATAGAATGTAAATAATTAGGCTAAATATACCAACTAGTCCCTAATTTTTCATGTAATTCTCAATTTGAACATTAGTCTTCTAAAAAACTCAATTCTACGCCAATGTACTGGGTTAAGTCTTTTAGGGAAAAAAATATTTAAAATTTATTAAAAAAGTATCGTACCTTGTCAAATTATTTTTTTATTAACATATTTGAACATGTGGATGTACGACTTGAAAGAAATGGATTTTGTTGATGAGTAAGTTGAATTTTAATAATGGACGAATTGAATTTAATGTGTCTAGCCATTCAAGTTGCATATCCATGCGTTAAAGTAATAATTTAATGATAGTTAATAGTTTTAACAAAGATTTTATGAAGAGGATCTAATTAAATTACAAGGGTAAAATTGAGAATTGACTAAAATATTATATGACAAATAATTTTCTTGTGAGTTAGTTTTGTGGTCGCTTATGGTCAGAAAAAGAAGAAAATGCAAATGTTCTCGAATAGTTTGCAATTATAAAAACCATAAAAAAGAAATAAGAAACAAAAATTTTGTTTCCAAAACAAATACTTTGTTTTGAGAACTCTTTCAAAGGGAACAGAAGAACAGAAGTATCAAAACATGCACATTATCAAACGGGTCCTCGAAAGATTAGGAAAAAAAAAACAGAAAGAAAAAATCTACAATGCATCTAACCTTCTTGAGCTCTTTTTTTTGGTCCTGTTAACATTCATGTAGGTGATTCTTTTGCTGTGGAAACTGGGAATGTTGCTTCATTTTGGGGTGCTTGATATGAATGAAAGCGTTTAATCCAGGCATTACAAATCTGAACATCATCAGCCCATTTCTCAATTCTGCATTGTTTATCGAACCTGCCGAGAATTTTACTGGTCAACATTTCGAAGGGGAAACCGCAGGCGCTATAGATTTTTCGATCTTGATCTTGCCTGCAAGGTGTAA

mRNA sequence

ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGATTGCCAACACAGAGTTGCATCCAGTCACCTGACAATCTACTGTGTAATTTCTAGTGCACTTGATTACTTGTTGCTGAAATTTAGTTTACAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAAATCTTATGCAATAATCAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTTCAAGGCAGGCATTACAAATCTGAACATCATCAGCCCATTTCTCAATTCTGCATTGTTTATCGAACCTGCCGAGAATTTTACTGGTCAACATTTCGAAGGGGAAACCGCAGGCGCTATAGATTTTTCGATCTTGATCTTGCCTGCAAGGTGTAA

Coding sequence (CDS)

ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGATTGCCAACACAGAGTTGCATCCAGTCACCTGACAATCTACTGTGTAATTTCTAGTGCACTTGATTACTTGTTGCTGAAATTTAGTTTACAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAAATCTTATGCAATAATCAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTTCAAGGCAGGCATTACAAATCTGAACATCATCAGCCCATTTCTCAATTCTGCATTGTTTATCGAACCTGCCGAGAATTTTACTGGTCAACATTTCGAAGGGGAAACCGCAGGCGCTATAGATTTTTCGATCTTGATCTTGCCTGCAAGGTGTAA

Protein sequence

MDNLWAEGKFYVQPNPLTALGLEDCQHRVASSHLTIYCVISSALDYLLLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGRHYKSEHHQPISQFCIVYRTCREFYWSTFRRGNRRRYRFFDLDLACKV

Homology

[Close]

BLAST of Lsi11G004750 vs. ExPASy Swiss-Prot
Match: B4GIJ0 (WD repeat-containing protein 48 homolog OS=Drosophila persimilis OX=7234 GN=GL16745 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.1e-05
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 75  LSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVV 134
           L ++  DG+      P ++    IE+ CN+ V+ P+M L TVR++IWK+  DL   Y+  
Sbjct: 604 LQNSQSDGNSEGSQLPAEE---RIELSCNDVVVDPNMDLRTVRHFIWKQSTDLTFQYKTK 663

Query: 135 QGRHY 140
           Q  +Y
Sbjct: 664 QNFNY 665

[Close]

BLAST of Lsi11G004750 vs. ExPASy Swiss-Prot
Match: Q28YY2 (WD repeat-containing protein 48 homolog OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA21511 PE=3 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 7.1e-05
Identity = 23/65 (35.38%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 75  LSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVV 134
           L ++  DG+      P ++    IE+ CN+ V+ P+M L TVR++IWK+  DL   Y+  
Sbjct: 604 LQNSQSDGNSEGSQLPAEE---RIELSCNDVVVDPNMDLRTVRHFIWKQSTDLTFQYKTK 663

Query: 135 QGRHY 140
           Q  +Y
Sbjct: 664 QNFNY 665

[Close]

BLAST of Lsi11G004750 vs. ExPASy Swiss-Prot
Match: Q32PG3 (WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.3e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 98  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR 133
           IE+LC +QVL P+M L TV+++IWK   DL L+YR
Sbjct: 639 IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673

[Close]

BLAST of Lsi11G004750 vs. ExPASy Swiss-Prot
Match: Q5F3K4 (WD repeat-containing protein 48 OS=Gallus gallus OX=9031 GN=WDR48 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.3e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 98  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR 133
           IE+LC +QVL P+M L TV+++IWK   DL L+YR
Sbjct: 640 IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 674

[Close]

BLAST of Lsi11G004750 vs. ExPASy Swiss-Prot
Match: Q8TAF3 (WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.3e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 98  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR 133
           IE+LC +QVL P+M L TV+++IWK   DL L+YR
Sbjct: 639 IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673

[Close]

BLAST of Lsi11G004750 vs. ExPASy TrEMBL
Match: A0A6J1KAE3 (WD repeat-containing protein 48-like OS=Cucurbita maxima OX=3661 GN=LOC111493682 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.4e-40
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 667 VVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 726

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQ 136
           SPDMSLATVRNYIWKKPEDLVLNYRVVQ
Sbjct: 727 SPDMSLATVRNYIWKKPEDLVLNYRVVQ 754

[Close]

BLAST of Lsi11G004750 vs. ExPASy TrEMBL
Match: A0A5D3D4C5 (WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001170 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.4e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 668 VVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQVL 727

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 728 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of Lsi11G004750 vs. ExPASy TrEMBL
Match: A0A5A7V6A0 (WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001460 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.4e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 668 VVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQVL 727

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 728 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of Lsi11G004750 vs. ExPASy TrEMBL
Match: E5GBR4 (Nucleotide binding protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.4e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 616 VVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQVL 675

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 676 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 705

[Close]

BLAST of Lsi11G004750 vs. ExPASy TrEMBL
Match: A0A0A0LJF0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G012680 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.4e-40
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 668 VVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQVL 727

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 728 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of Lsi11G004750 vs. NCBI nr
Match: XP_038890074.1 (WD repeat-containing protein 48 [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-40
Identity = 81/90 (90.00%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN  PDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 668 VVNYVIEKMVLDKPLDNATPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 727

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 728 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of Lsi11G004750 vs. NCBI nr
Match: ADN33906.1 (nucleotide binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-39
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 616 VVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQVL 675

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 676 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 705

[Close]

BLAST of Lsi11G004750 vs. NCBI nr
Match: XP_022999257.1 (WD repeat-containing protein 48-like [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-39
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 667 VVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 726

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQ 136
           SPDMSLATVRNYIWKKPEDLVLNYRVVQ
Sbjct: 727 SPDMSLATVRNYIWKKPEDLVLNYRVVQ 754

[Close]

BLAST of Lsi11G004750 vs. NCBI nr
Match: XP_004139215.1 (WD repeat-containing protein 48 [Cucumis sativus] >KGN60837.1 hypothetical protein Csa_019327 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-39
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 668 VVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQVL 727

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 728 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of Lsi11G004750 vs. NCBI nr
Match: KAA0063633.1 (WD repeat-containing protein 48 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-39
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 48  LLKFSLQKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 107
           ++ + ++KMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQVL
Sbjct: 668 VVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQVL 727

Query: 108 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 728 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of Lsi11G004750 vs. TAIR 10
Match: AT3G05090.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-26
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 51  FSLQKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 110
           + ++KMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN+QVL
Sbjct: 664 YVVEKMVLDNPLDSLAIDAASVSGGQPQPLFSGNGLLQSGLKPWQKLRPSIEILCNSQVL 723

Query: 111 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVR Y+WKKPEDL+LNYRV   R
Sbjct: 724 SPDMSLATVRAYVWKKPEDLILNYRVAIAR 753

[Close]

BLAST of Lsi11G004750 vs. TAIR 10
Match: AT3G05090.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-26
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 51  FSLQKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVL 110
           + ++KMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN+QVL
Sbjct: 664 YVVEKMVLDNPLDSLAIDAASVSGGQPQPLFSGNGLLQSGLKPWQKLRPSIEILCNSQVL 723

Query: 111 SPDMSLATVRNYIWKKPEDLVLNYRVVQGR 138
           SPDMSLATVR Y+WKKPEDL+LNYRV   R
Sbjct: 724 SPDMSLATVRAYVWKKPEDLILNYRVAIAR 753

The following BLAST results are available for this feature:

BLAST of Lsi11G004750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B4GIJ0	7.1e-05	35.38	WD repeat-containing protein 48 homolog OS=Drosophila persimilis OX=7234 GN=GL16...	[more]
Q28YY2	7.1e-05	35.38	WD repeat-containing protein 48 homolog OS=Drosophila pseudoobscura pseudoobscur...	[more]
Q32PG3	9.3e-05	57.14	WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1	[more]
Q5F3K4	9.3e-05	57.14	WD repeat-containing protein 48 OS=Gallus gallus OX=9031 GN=WDR48 PE=2 SV=1	[more]
Q8TAF3	9.3e-05	57.14	WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1	[more]

BLAST of Lsi11G004750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAE3	5.4e-40	92.05	WD repeat-containing protein 48-like OS=Cucurbita maxima OX=3661 GN=LOC111493682...	[more]
A0A5D3D4C5	5.4e-40	90.00	WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V6A0	5.4e-40	90.00	WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
E5GBR4	5.4e-40	90.00	Nucleotide binding protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A0A0LJF0	5.4e-40	90.00	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]

BLAST of Lsi11G004750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890074.1	6.6e-40	90.00	WD repeat-containing protein 48 [Benincasa hispida]	[more]
ADN33906.1	1.1e-39	90.00	nucleotide binding protein [Cucumis melo subsp. melo]	[more]
XP_022999257.1	1.1e-39	92.05	WD repeat-containing protein 48-like [Cucurbita maxima]	[more]
XP_004139215.1	1.1e-39	90.00	WD repeat-containing protein 48 [Cucumis sativus] >KGN60837.1 hypothetical prote...	[more]
KAA0063633.1	1.1e-39	90.00	WD repeat-containing protein 48 [Cucumis melo var. makuwa]	[more]

BLAST of Lsi11G004750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05090.1	9.8e-26	63.33	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G05090.2	9.8e-26	63.33	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021772	WDR48/Bun107	PFAM	PF11816	DUF3337	coord: 95..132 e-value: 6.7E-13 score: 48.9
None	No IPR available	GENE3D	3.10.20.90		coord: 87..134 e-value: 1.7E-5 score: 26.6
None	No IPR available	PANTHER	PTHR19862:SF19	BNAC03G34120D PROTEIN	coord: 50..134
None	No IPR available	PANTHER	PTHR19862	WD REPEAT-CONTAINING PROTEIN 48	coord: 50..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004750.1	Lsi11G004750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0016579	protein deubiquitination
molecular_function	GO:0043130	ubiquitin binding