Lsi11G004410 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G004410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionpathogenesis-related protein PR-4-like
Locationchr11: 4609108 .. 4610064 (-)
RNA-Seq ExpressionLsi11G004410
SyntenyLsi11G004410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGAAAAGATTTGAGTTGAAAAGTATGCACTCATATTCTTCTATAAATTAAAGCACTCTCCCAATGAATCATTAAACTACAAACATTTATAAGTGTGAGAGAGTTATTAGAGAGAATTAAGAAAGCAAAGAATGGAGAGAGGAAGTATTATGATGATTTTGGTGTTGGCTTTGGGAGTTTTGAGCTTGGCAAATGCTCAAAGTGCCACAAATGTGAGAGCTACTTATCATTTATACAACCCACAAGACATCAATTGGGACTACCTTAAAGCAAGTGTTTATTGTGCCACATGGGATGCTAATAAGCCTTTGGAGTGGCGTCGTCGATACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGTTTGAGGGTAAGTAAATCTTCTCGATTGTTGATGAGTTTTTAACTGCATTTGTAAGCATTTTTCGTCCCTACACAAAATCATCATGTTTTAAAGTAATTTTAAAAGTCGTTTAATCTATCATAAAAAGAAGAATTTTTTTTTTAAGCTGAGAAACCTTTATGGGATGTAATGCAGGTGACTAACACTGAAACGGGAGCTTCAGAAATAGTAAGGATTGTTGATCAATGCTCCAATGGAGGGTTGGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAACGGAAACTTCCGAGGCCATCTTATTGTCAACTATGAGTTCGTCAATTGCTAAGATTTCTACTTTAATTTTATTTCATTCTTCCTAGAAGAAGAAAGGAAATCATGTTCTATGAATAAAGTATGAATAATAAAAAGTATGAAATAAATGTTTCTTTAGTTTATGAGCTTGGTTGAGGAAATAAAATGGGATGGGTTTGAGTTGTAATATAATCCAAAACCCATGTTTGAATTGAGCTTTTTAGACTTGATTTATAATATTAAACTCATTCTGTTCAAA

mRNA sequence

AAAAAAGAAAAGATTTGAGTTGAAAAGTATGCACTCATATTCTTCTATAAATTAAAGCACTCTCCCAATGAATCATTAAACTACAAACATTTATAAGTGTGAGAGAGTTATTAGAGAGAATTAAGAAAGCAAAGAATGGAGAGAGGAAGTATTATGATGATTTTGGTGTTGGCTTTGGGAGTTTTGAGCTTGGCAAATGCTCAAAGTGCCACAAATGTGAGAGCTACTTATCATTTATACAACCCACAAGACATCAATTGGGACTACCTTAAAGCAAGTGTTTATTGTGCCACATGGGATGCTAATAAGCCTTTGGAGTGGCGTCGTCGATACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGTTTGAGGGTGACTAACACTGAAACGGGAGCTTCAGAAATAGTAAGGATTGTTGATCAATGCTCCAATGGAGGGTTGGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAACGGAAACTTCCGAGGCCATCTTATTGTCAACTATGAGTTCGTCAATTGCTAAGATTTCTACTTTAATTTTATTTCATTCTTCCTAGAAGAAGAAAGGAAATCATGTTCTATGAATAAAGTATGAATAATAAAAAGTATGAAATAAATGTTTCTTTAGTTTATGAGCTTGGTTGAGGAAATAAAATGGGATGGGTTTGAGTTGTAATATAATCCAAAACCCATGTTTGAATTGAGCTTTTTAGACTTGATTTATAATATTAAACTCATTCTGTTCAAA

Coding sequence (CDS)

ATGGAGAGAGGAAGTATTATGATGATTTTGGTGTTGGCTTTGGGAGTTTTGAGCTTGGCAAATGCTCAAAGTGCCACAAATGTGAGAGCTACTTATCATTTATACAACCCACAAGACATCAATTGGGACTACCTTAAAGCAAGTGTTTATTGTGCCACATGGGATGCTAATAAGCCTTTGGAGTGGCGTCGTCGATACGGTTGGACCGCCTTCTGTGGCCCTGTCGGCCCTCGTGGCCAAGCTTCTTGTGGACGTTGTTTGAGGGTGACTAACACTGAAACGGGAGCTTCAGAAATAGTAAGGATTGTTGATCAATGCTCCAATGGAGGGTTGGATTTGGATGTGAATGTGTTTAGGAGGATTGACACTAATGGAAACGGAAACTTCCGAGGCCATCTTATTGTCAACTATGAGTTCGTCAATTGCTAA

Protein sequence

MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC
Homology
[Close]
BLAST of Lsi11G004410 vs. ExPASy Swiss-Prot
Match: P32045 (Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 9.5e-58
Identity = 106/143 (74.13%), Postives = 118/143 (82.52%), Query Frame = 0 

Query: 1   MERGSIMMILVLALG-VLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKP 60
           MER + + +    +  ++++A AQSATNVRATYHLYNPQ+INWD   ASVYCATWDA+KP
Sbjct: 1   MERVNKLCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKP 60

Query: 61  LEWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFR 120
           LEWRRRYGWTAFCGP GP GQASCGRCLRVTNT TG  E VRIVDQC NGGLDLDVNVF 
Sbjct: 61  LEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFN 120

Query: 121 RIDTNGNGNFRGHLIVNYEFVNC 143
           R+DTNG G  RG+L VNYEFVNC
Sbjct: 121 RLDTNGLGYQRGNLNVNYEFVNC 143

[Close]
BLAST of Lsi11G004410 vs. ExPASy Swiss-Prot
Match: P29063 (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 98/137 (71.53%), Postives = 115/137 (83.94%), Query Frame = 0 

Query: 6   IMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPLEWRRR 65
           + + L++   ++++A AQSATNVR+TYHLYNPQ+INWD   AS +CATWDA+KPL WR++
Sbjct: 9   LCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQK 68

Query: 66  YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNG 125
           YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQCSNGGLDLDVNVF ++DTNG
Sbjct: 69  YGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNG 128

Query: 126 NGNFRGHLIVNYEFVNC 143
            G  +GHLIVNYEFVNC
Sbjct: 129 LGYQQGHLIVNYEFVNC 145

[Close]
BLAST of Lsi11G004410 vs. ExPASy Swiss-Prot
Match: P29062 (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.6e-55
Identity = 98/137 (71.53%), Postives = 114/137 (83.21%), Query Frame = 0 

Query: 6   IMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPLEWRRR 65
           + + L++   V+++A AQSATNVR+TYHLYNPQ+INWD   AS +CATWDA+KPL WR++
Sbjct: 9   LCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQK 68

Query: 66  YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNG 125
           YGWTAFCGP GPRGQ SCGRCLRVTNT TG    VRIVDQCSNGGLDLDVNVF ++DTNG
Sbjct: 69  YGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNG 128

Query: 126 NGNFRGHLIVNYEFVNC 143
            G  +GHL VNYEFVNC
Sbjct: 129 VGYQQGHLTVNYEFVNC 145

[Close]
BLAST of Lsi11G004410 vs. ExPASy Swiss-Prot
Match: P09761 (Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 0 

Query: 24  SATNVRATYHLYNPQDINWDYLKASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S YC+TWDANKPL WR++YGWTAFCGPVGPRG+ SC
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 84  GRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC 143
           G+CLRVTNT TGA   VRIVDQCSNGGLDLDVNVFR+IDT+GNGN +GHLIVNY+FV+C
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDC 197

[Close]
BLAST of Lsi11G004410 vs. ExPASy Swiss-Prot
Match: P09762 (Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.2e-52
Identity = 89/119 (74.79%), Postives = 102/119 (85.71%), Query Frame = 0 

Query: 24  SATNVRATYHLYNPQDINWDYLKASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQASC 83
           SA NVRATYH+YNPQ++ WD    S YC+TWDANKP  WR +YGWTAFCGPVGPRG+ SC
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 84  GRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC 143
           G+CLRVTNT TGA   VRIVDQCSNGGLDLD+NVF++IDT+G GN +GHLIVNY+FVNC
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNC 196

[Close]
BLAST of Lsi11G004410 vs. ExPASy TrEMBL
Match: A0A5D3D4G8 (Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001500 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 134/142 (94.37%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYL+ASV+CATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGNFRGHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. ExPASy TrEMBL
Match: A0A1S3C3H6 (pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.5e-74
Identity = 134/142 (94.37%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYL+ASV+CATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGNFRGHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. ExPASy TrEMBL
Match: A0A0A0LIC8 (Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010390 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           M +GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYL+ASV+CATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGN RGHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. ExPASy TrEMBL
Match: A0A6J1K9X1 (pathogenesis-related protein PR-4-like OS=Cucurbita maxima OX=3661 GN=LOC111493583 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.2e-72
Identity = 128/142 (90.14%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+GS +MIL LALG+LSLANAQSA NVRATYHLYNPQDINWDYL+ASV+CATWDANKP+
Sbjct: 1   MEKGSFLMILALALGILSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. ExPASy TrEMBL
Match: A0A6J1G2U1 (pathogenesis-related protein PR-4-like OS=Cucurbita moschata OX=3662 GN=LOC111450306 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.2e-72
Identity = 129/142 (90.85%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+ SI+MIL LALGVLSLANAQSA NVRATYHLYNPQDINWDYL+ASV+CATWDANKP+
Sbjct: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. NCBI nr
Match: XP_008456018.1 (PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo] >KAA0063603.1 pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa] >TYK18424.1 pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 3.1e-74
Identity = 134/142 (94.37%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYL+ASV+CATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRRYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGNFRGHL VNY+FVNC
Sbjct: 121 IDTNGNGNFRGHLTVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. NCBI nr
Match: XP_038890575.1 (pathogenesis-related protein PR-4-like [Benincasa hispida])

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-73
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+GSIMMILVLALGVLS+ANAQSA NVRATYHLYNPQ+INWDYL+ASVYCATWDANKPL
Sbjct: 1   MEKGSIMMILVLALGVLSMANAQSANNVRATYHLYNPQNINWDYLRASVYCATWDANKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGAS IVRIVDQCSNGGLDLDVNVF++
Sbjct: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASTIVRIVDQCSNGGLDLDVNVFKQ 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           +DTNGNGNFRGHL VNY+FVNC
Sbjct: 121 LDTNGNGNFRGHLTVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. NCBI nr
Match: XP_004139239.1 (pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60804.1 hypothetical protein Csa_019369 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 2.9e-72
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           M +GSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYL+ASV+CATWDA+KPL
Sbjct: 1   MGKGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDADKPL 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRG+ SCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVFRR
Sbjct: 61  EWRRQYGWTAFCGPVGPRGRDSCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFRR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNGN RGHLIVNY+FVNC
Sbjct: 121 IDTNGNGNLRGHLIVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. NCBI nr
Match: XP_022999102.1 (pathogenesis-related protein PR-4-like [Cucurbita maxima] >XP_023521168.1 pathogenesis-related protein PR-4-like [Cucurbita pepo subsp. pepo] >XP_023547311.1 pathogenesis-related protein PR-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72
Identity = 128/142 (90.14%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+GS +MIL LALG+LSLANAQSA NVRATYHLYNPQDINWDYL+ASV+CATWDANKP+
Sbjct: 1   MEKGSFLMILALALGILSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. NCBI nr
Match: XP_022946136.1 (pathogenesis-related protein PR-4-like [Cucurbita moschata])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 129/142 (90.85%), Postives = 138/142 (97.18%), Query Frame = 0 

Query: 1   MERGSIMMILVLALGVLSLANAQSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPL 60
           ME+ SI+MIL LALGVLSLANAQSA NVRATYHLYNPQDINWDYL+ASV+CATWDANKP+
Sbjct: 1   MEKVSILMILALALGVLSLANAQSANNVRATYHLYNPQDINWDYLRASVFCATWDANKPI 60

Query: 61  EWRRRYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRR 120
           EWRR+YGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQC+NGGLDLDVNVF+R
Sbjct: 61  EWRRQYGWTAFCGPVGPRGQASCGRCLRVTNTETGASEIVRIVDQCANGGLDLDVNVFKR 120

Query: 121 IDTNGNGNFRGHLIVNYEFVNC 143
           IDTNGNG FRGHLIVNY+FVNC
Sbjct: 121 IDTNGNGVFRGHLIVNYQFVNC 142

[Close]
BLAST of Lsi11G004410 vs. TAIR 10
Match: AT3G04720.1 (pathogenesis-related 4 )

HSP 1 Score: 190.7 bits (483), Expect = 8.3e-49
Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 0 

Query: 23  QSATNVRATYHLYNPQDINWDYLKASVYCATWDANKPLEWRRRYGWTAFCGPVGPRGQAS 82
           +SA+NVRATYH YNP   NWD    S YC+TWDA+KP  WR +YGWTAFCGP GPRGQAS
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 83  CGRCLRVTNTETGASEIVRIVDQCSNGGLDLDVNVFRRIDTNGNGNFRGHLIVNYEFVNC 142
           CG+CLRV NT T A+  VRIVDQCSNGGLDLDV +F +IDT+G G  +GHLIV+Y+FV+C
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

The following BLAST results are available for this feature:
BLAST of Lsi11G004410 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P320459.5e-5874.13Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1[more]
P290631.5e-5571.53Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1[more]
P290622.6e-5571.53Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1[more]
P097615.8e-5577.31Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1[more]
P097621.2e-5274.79Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1[more]
BLAST of Lsi11G004410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D4G81.5e-7494.37Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A1S3C3H61.5e-7494.37pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 P... [more]
A0A0A0LIC81.4e-7292.25Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010390 PE=4... [more]
A0A6J1K9X13.2e-7290.14pathogenesis-related protein PR-4-like OS=Cucurbita maxima OX=3661 GN=LOC1114935... [more]
A0A6J1G2U19.2e-7290.85pathogenesis-related protein PR-4-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
BLAST of Lsi11G004410 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456018.13.1e-7494.37PREDICTED: pathogenesis-related protein PR-4-like [Cucumis melo] >KAA0063603.1 p... [more]
XP_038890575.14.5e-7392.25pathogenesis-related protein PR-4-like [Benincasa hispida][more]
XP_004139239.12.9e-7292.25pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60804.1 hypothetical pro... [more]
XP_022999102.16.5e-7290.14pathogenesis-related protein PR-4-like [Cucurbita maxima] >XP_023521168.1 pathog... [more]
XP_022946136.11.9e-7190.85pathogenesis-related protein PR-4-like [Cucurbita moschata][more]
BLAST of Lsi11G004410 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G04720.18.3e-4969.17pathogenesis-related 4 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001153Barwin domainPRINTSPR00602BARWINcoord: 58..76
score: 79.3
coord: 77..95
score: 75.79
coord: 117..141
score: 66.4
coord: 96..114
score: 79.3
IPR001153Barwin domainPFAMPF00967Barwincoord: 24..142
e-value: 2.7E-59
score: 198.3
IPR001153Barwin domainPROSITEPS51174BARWIN_3coord: 23..142
score: 81.418312
IPR036908RlpA-like domain superfamilyGENE3D2.40.40.10coord: 23..142
e-value: 4.5E-56
score: 189.9
IPR036908RlpA-like domain superfamilySUPERFAMILY50685Barwin-like endoglucanasescoord: 23..142
IPR044301Pathogenesis-related protein-4PANTHERPTHR46351WOUND-INDUCED PROTEIN WIN2coord: 6..142
NoneNo IPR availablePANTHERPTHR46351:SF6PATHOGENESIS-RELATED PROTEIN PR-4Acoord: 6..142
IPR018226Barwin, conserved sitePROSITEPS00772BARWIN_2coord: 135..142
IPR018226Barwin, conserved sitePROSITEPS00771BARWIN_1coord: 83..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G004410.1Lsi11G004410.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0006952 defense response
molecular_function GO:0004540 ribonuclease activity