Lsi11G004360 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G004360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Prefoldin subunit 4
Location	chr11: 4575052 .. 4576409 (-)
RNA-Seq Expression	Lsi11G004360
Synteny	Lsi11G004360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCGATCCATCCGTGGGACCCATAATAGGGTCACTTTCGTCATTTCAATCAGGGATCCAAGTGACTAGTTCCATTTCTCTCTAACCAAGAGTTTTCTTTCTTATTTTTCACTACGAGCGATCGACTGTTCGAACATGCAGCAGGTAAACGAAACCCTAATCAAATTCGTATTGAACCAAAAAAATTTCCCTTTTTATGATTCAAATTCCTCTTCATTTTCCGTTCTTTTACAATGGCGTTCTTGATACCTAATATGCACAGGGCGGAGGATCTGAATCGGAGGTCACATGGGAAGACCAGCAGAATATTAACAAATTTAGTAGGTTAAACAATCGGTTCCACGAGCTTGAAGATGAGATTAGAACCGCCAAGGTATTGATTACATCCGAGGAATTGGATATTTCATGATCTGGTTTTCTTTTTCTTTTTACTTTAAATTTCTGACGCGCTTGCTGAATTTCTGATGGATTTTGAGTATCAATGTAATATGAACTTAGAGTTTCTCCTCTTGAATTTTTTGAGTGCTTGATATATTGTTAAAAGTTTCAATTGGGTTGTTTCTTTTTACCATTTTCTTTTTAGATTCAATTTTTGTACTTACAGGGGAGGCAAGTCGATTTTAACATCATTTCATTGGACAGAATCTTTATCCTTCTTTTTTCAATAATTTGTTCAATGTGTCACAATATACCCTAGATGTTTTCTTGTTTTGTTCTTCAGCACAATGTATCTTCTTTTTCAGCTTTACTTTTTAGTGGTATTTTATTTGGGAAACTTTAGTTAGTGAAGCGATTCATCAATACTTGAACCCTGCGTCTCCTACAATATGTCAGTGCAACGAAATGTTTATTAGAGTGAGTGAGTTTGGGATGACTTTTAAGGGTAATGCTTTTAAGGGGTAGCAATTGGGAAAAAGAACTGGTTAATTTCTTCCTCCATAAGCATTTTAAAGTGCCTTCAAGGGAATTTTCAAAATCACTTTTGGTTATGTAGTCAAATACCATGAAATTTTTGTGAACTGCTTTAAATTGGCTAACACACTTCTGGTTATTGTAAAAGTCATATTGAACTCACCTTTGACGGTTACTTTTCATAGGAAACAAATGATAATCTAGAGGATGCGAGTAATGAGTTGATTCTCTGTGATGAAGACGTGATTCGTTTCCATATTGGGGAAGTTTTTGCCCATGTACCAAGGGAAGAAGTAGAAGGCAGGTTGGAAGAAATGAAAGAGGAAAATGTTAAGAACTTGGAGAAACTTGAGGAAGAAAGGGATTCTATCGTGGCCCAGATGGCTGAGTTGAAGAAAATTCTGTACGGGAAGTTCAAAGATTCCATTAATCTAGAAGATGATTAA

mRNA sequence

CCTCGATCCATCCGTGGGACCCATAATAGGGTCACTTTCGTCATTTCAATCAGGGATCCAAGTGACTAGTTCCATTTCTCTCTAACCAAGAGTTTTCTTTCTTATTTTTCACTACGAGCGATCGACTGTTCGAACATGCAGCAGGGCGGAGGATCTGAATCGGAGGTCACATGGGAAGACCAGCAGAATATTAACAAATTTAGTAGGTTAAACAATCGGTTCCACGAGCTTGAAGATGAGATTAGAACCGCCAAGCACAATGTATCTTCTTTTTCAGCTTTACTTTTTAGTGAGGATGCGAGTAATGAGTTGATTCTCTGTGATGAAGACGTGATTCGTTTCCATATTGGGGAAGTTTTTGCCCATGTACCAAGGGAAGAAGTAGAAGGCAGGTTGGAAGAAATGAAAGAGGAAAATGTTAAGAACTTGGAGAAACTTGAGGAAGAAAGGGATTCTATCGTGGCCCAGATGGCTGAGTTGAAGAAAATTCTGTACGGGAAGTTCAAAGATTCCATTAATCTAGAAGATGATTAA

Coding sequence (CDS)

ATGCAGCAGGGCGGAGGATCTGAATCGGAGGTCACATGGGAAGACCAGCAGAATATTAACAAATTTAGTAGGTTAAACAATCGGTTCCACGAGCTTGAAGATGAGATTAGAACCGCCAAGCACAATGTATCTTCTTTTTCAGCTTTACTTTTTAGTGAGGATGCGAGTAATGAGTTGATTCTCTGTGATGAAGACGTGATTCGTTTCCATATTGGGGAAGTTTTTGCCCATGTACCAAGGGAAGAAGTAGAAGGCAGGTTGGAAGAAATGAAAGAGGAAAATGTTAAGAACTTGGAGAAACTTGAGGAAGAAAGGGATTCTATCGTGGCCCAGATGGCTGAGTTGAAGAAAATTCTGTACGGGAAGTTCAAAGATTCCATTAATCTAGAAGATGATTAA

Protein sequence

MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELILCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILYGKFKDSINLEDD

Homology

[Close]

BLAST of Lsi11G004360 vs. ExPASy Swiss-Prot
Match: Q9M4C4 (Probable prefoldin subunit 4 OS=Avena fatua OX=4499 GN=VIP3 PE=2 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-44
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQG G+E++VTWEDQQNIN+F RLNNRFHEL DEIR AK    +       EDA NELI
Sbjct: 1   MQQGDGTEAQVTWEDQQNINRFGRLNNRFHELTDEIRLAKEANENL------EDAGNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           LCDEDV+RF IGEVFAH+P ++VE RLE+MKE+  K LE+LEEE++SI+AQMAELKKILY
Sbjct: 61  LCDEDVVRFQIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKD+INLE+D
Sbjct: 121 GKFKDAINLEED 126

[Close]

BLAST of Lsi11G004360 vs. ExPASy Swiss-Prot
Match: Q9M4B5 (Probable prefoldin subunit 4 OS=Arabidopsis thaliana OX=3702 GN=AIP3 PE=1 SV=3)

HSP 1 Score: 164.5 bits (415), Expect = 8.3e-40
Identity = 88/135 (65.19%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MQQGG---GSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASN 60
           MQQ G   GSE EVTWEDQQNIN FSRLNNR H+L+D+I++AK    +       EDA N
Sbjct: 1   MQQQGSKSGSEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENL------EDAGN 60

Query: 61  ELILCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKK 120
           ELIL DE+++RF IGEVFAHVPR++VE ++EEMKE   K+LEKLE+E++SIV QMA LKK
Sbjct: 61  ELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKK 120

Query: 121 ILYGKFKDSINLEDD 133
           +LY KFKDSINLE+D
Sbjct: 121 VLYAKFKDSINLEED 129

[Close]

BLAST of Lsi11G004360 vs. ExPASy Swiss-Prot
Match: Q9NQP4 (Prefoldin subunit 4 OS=Homo sapiens OX=9606 GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-14
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           M++    +  VT+EDQQ INKF+R  +R  EL++EI   K  + +       EDA ++++
Sbjct: 5   MKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNL------EDACDDIM 64

Query: 61  LCDED--VIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKI 120
           L D+D  +I + IG+VF    +EE +  LEE K+   + ++ LE   +SI   +A+LK  
Sbjct: 65  LADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQ 124

Query: 121 LYGKFKDSINLEDD 133
           LY KF  +INLE D
Sbjct: 125 LYAKFGSNINLEAD 132

[Close]

BLAST of Lsi11G004360 vs. ExPASy Swiss-Prot
Match: Q2TBR6 (Prefoldin subunit 4 OS=Bos taurus OX=9913 GN=PFDN4 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.0e-14
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           M++    +  VT+EDQQ INKF+R  +R  EL++EI   K  + +       EDA  +++
Sbjct: 5   MKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNL------EDACEDIM 64

Query: 61  LCDED--VIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKI 120
           L D+D  +I + IG+VF    +EE +  LEE K+   + ++ LE   +SI   +A+LK  
Sbjct: 65  LADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQ 124

Query: 121 LYGKFKDSINLEDD 133
           LY KF  +INLE D
Sbjct: 125 LYAKFGSNINLEAD 132

[Close]

BLAST of Lsi11G004360 vs. ExPASy Swiss-Prot
Match: Q54TB7 (Probable prefoldin subunit 4 OS=Dictyostelium discoideum OX=44689 GN=pfdn4 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 44/125 (35.20%), Postives = 75/125 (60.00%), Query Frame = 0


Query: 8   ESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELILCDED-V 67
           E+EV   DQ+ IN F RLNNR HEL  E +  + ++        + D+ ++L + D+D  
Sbjct: 14  ETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEK------ATDSQDDLFIADDDSK 73

Query: 68  IRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILYGKFKDS 127
            ++ +GE F  V +E+ E  +E+   +  ++++K++ + + I  +  ELK ILY KFK+S
Sbjct: 74  FKYSMGEAFLEVNKEDAESLIEKYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNS 132

Query: 128 INLED 132
           INLE+
Sbjct: 134 INLEE 132

[Close]

BLAST of Lsi11G004360 vs. ExPASy TrEMBL
Match: A0A6J1K9X7 (Prefoldin subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111493587 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 117/132 (88.64%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L DEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEE+DSIVAQMAELK+ILY
Sbjct: 61  LSDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEEKDSIVAQMAELKRILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. ExPASy TrEMBL
Match: A0A6J1G2Y9 (Prefoldin subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111450309 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.4e-53
Identity = 117/132 (88.64%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L DED+IRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEE+DSIVAQMAELKKILY
Sbjct: 61  LSDEDMIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEEKDSIVAQMAELKKILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. ExPASy TrEMBL
Match: A0A0A0LFH2 (Prefoldin subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G010310 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.4e-51
Identity = 111/132 (84.09%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNENL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L D+DVIRF IGEVFAH+P+EEVEGRLE+MKEENV+NLEKL+EE+DSIVAQMAELKKILY
Sbjct: 61  LSDDDVIRFQIGEVFAHIPKEEVEGRLEQMKEENVENLEKLKEEKDSIVAQMAELKKILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. ExPASy TrEMBL
Match: A0A5D3D4H6 (Prefoldin subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001560 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 110/132 (83.33%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L D+DVIRF IGEVFAH+P+EEVEGRLE+MKEENV++L+KLEEE+DSIVAQMAELKKILY
Sbjct: 61  LSDDDVIRFQIGEVFAHIPKEEVEGRLEQMKEENVEHLKKLEEEKDSIVAQMAELKKILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. ExPASy TrEMBL
Match: A0A1S3C216 (Prefoldin subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496138 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 110/132 (83.33%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L D+DVIRF IGEVFAH+P+EEVEGRLE+MKEENV++L+KLEEE+DSIVAQMAELKKILY
Sbjct: 61  LSDDDVIRFQIGEVFAHIPKEEVEGRLEQMKEENVEHLKKLEEEKDSIVAQMAELKKILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. NCBI nr
Match: XP_023521156.1 (probable prefoldin subunit 4 [Cucurbita pepo subsp. pepo] >XP_023545585.1 probable prefoldin subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 118/132 (89.39%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L DEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEE+DSIVAQMAELKKILY
Sbjct: 61  LSDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEEKDSIVAQMAELKKILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. NCBI nr
Match: XP_022946140.1 (probable prefoldin subunit 4 [Cucurbita moschata])

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-53
Identity = 117/132 (88.64%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L DED+IRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEE+DSIVAQMAELKKILY
Sbjct: 61  LSDEDMIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEEKDSIVAQMAELKKILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. NCBI nr
Match: KAG7030312.1 (putative prefoldin subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-53
Identity = 117/132 (88.64%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 53  MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 112

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L DED+IRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEE+DSIVAQMAELKKILY
Sbjct: 113 LSDEDMIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEEKDSIVAQMAELKKILY 172

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 173 GKFKDSINLEDD 178

[Close]

BLAST of Lsi11G004360 vs. NCBI nr
Match: KAG6599316.1 (putative prefoldin subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-53
Identity = 117/132 (88.64%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 53  MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 112

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L DED+IRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEE+DSIVAQMAELKKILY
Sbjct: 113 LSDEDMIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEEKDSIVAQMAELKKILY 172

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 173 GKFKDSINLEDD 178

[Close]

BLAST of Lsi11G004360 vs. NCBI nr
Match: XP_022999107.1 (probable prefoldin subunit 4 [Cucurbita maxima])

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-53
Identity = 117/132 (88.64%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASNELI 60
           MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAK    +       EDASNELI
Sbjct: 1   MQQGGGSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKETNDNL------EDASNELI 60

Query: 61  LCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKKILY 120
           L DEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEE+DSIVAQMAELK+ILY
Sbjct: 61  LSDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEEKDSIVAQMAELKRILY 120

Query: 121 GKFKDSINLEDD 133
           GKFKDSINLEDD
Sbjct: 121 GKFKDSINLEDD 126

[Close]

BLAST of Lsi11G004360 vs. TAIR 10
Match: AT1G08780.1 (ABI3-interacting protein 3 )

HSP 1 Score: 164.5 bits (415), Expect = 5.9e-41
Identity = 88/135 (65.19%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MQQGG---GSESEVTWEDQQNINKFSRLNNRFHELEDEIRTAKHNVSSFSALLFSEDASN 60
           MQQ G   GSE EVTWEDQQNIN FSRLNNR H+L+D+I++AK    +       EDA N
Sbjct: 1   MQQQGSKSGSEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENL------EDAGN 60

Query: 61  ELILCDEDVIRFHIGEVFAHVPREEVEGRLEEMKEENVKNLEKLEEERDSIVAQMAELKK 120
           ELIL DE+++RF IGEVFAHVPR++VE ++EEMKE   K+LEKLE+E++SIV QMA LKK
Sbjct: 61  ELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKK 120

Query: 121 ILYGKFKDSINLEDD 133
           +LY KFKDSINLE+D
Sbjct: 121 VLYAKFKDSINLEED 129

The following BLAST results are available for this feature:

BLAST of Lsi11G004360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M4C4	1.1e-44	70.45	Probable prefoldin subunit 4 OS=Avena fatua OX=4499 GN=VIP3 PE=2 SV=1	[more]
Q9M4B5	8.3e-40	65.19	Probable prefoldin subunit 4 OS=Arabidopsis thaliana OX=3702 GN=AIP3 PE=1 SV=3	[more]
Q9NQP4	4.6e-14	38.06	Prefoldin subunit 4 OS=Homo sapiens OX=9606 GN=PFDN4 PE=1 SV=1	[more]
Q2TBR6	6.0e-14	38.06	Prefoldin subunit 4 OS=Bos taurus OX=9913 GN=PFDN4 PE=2 SV=1	[more]
Q54TB7	2.1e-11	35.20	Probable prefoldin subunit 4 OS=Dictyostelium discoideum OX=44689 GN=pfdn4 PE=3 ...	[more]

BLAST of Lsi11G004360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9X7	1.4e-53	88.64	Prefoldin subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111493587 PE=3 SV=1	[more]
A0A6J1G2Y9	1.4e-53	88.64	Prefoldin subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111450309 PE=3 SV=1	[more]
A0A0A0LFH2	6.4e-51	84.09	Prefoldin subunit 4 OS=Cucumis sativus OX=3659 GN=Csa_2G010310 PE=3 SV=1	[more]
A0A5D3D4H6	2.4e-50	83.33	Prefoldin subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G...	[more]
A0A1S3C216	2.4e-50	83.33	Prefoldin subunit 4 OS=Cucumis melo OX=3656 GN=LOC103496138 PE=3 SV=1	[more]

BLAST of Lsi11G004360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521156.1	1.3e-53	89.39	probable prefoldin subunit 4 [Cucurbita pepo subsp. pepo] >XP_023545585.1 probab...	[more]
XP_022946140.1	2.8e-53	88.64	probable prefoldin subunit 4 [Cucurbita moschata]	[more]
KAG7030312.1	2.8e-53	88.64	putative prefoldin subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6599316.1	2.8e-53	88.64	putative prefoldin subunit 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022999107.1	2.8e-53	88.64	probable prefoldin subunit 4 [Cucurbita maxima]	[more]

BLAST of Lsi11G004360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08780.1	5.9e-41	65.19	ABI3-interacting protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	COILS	Coil	Coil	coord: 80..118
None	No IPR available	PANTHER	PTHR21100:SF10	PREFOLDIN SUBUNIT 4	coord: 1..132
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 22..120
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 16..125 e-value: 6.3E-19 score: 67.9
IPR016661	Prefoldin, subunit 4	PIRSF	PIRSF016477	Prefoldin_4	coord: 1..131 e-value: 5.0E-38 score: 128.0
IPR016661	Prefoldin, subunit 4	PANTHER	PTHR21100	PREFOLDIN SUBUNIT 4	coord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G004360.1	Lsi11G004360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding