Lsi11G004180 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW Homology
BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A5A7VDH6 (VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001220 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24 Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 0
BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A0A0LFF9 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 3.9e-23 Identity = 70/101 (69.31%), Postives = 75/101 (74.26%), Query Frame = 0
BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A6J1FJE0 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444440 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12 Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 0
BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A6J1CME4 (sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111012954 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 0
BLAST of Lsi11G004180 vs. NCBI nr
Match: KAA0063579.1 (VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23 Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 0
BLAST of Lsi11G004180 vs. NCBI nr
Match: KAE8651551.1 (hypothetical protein Csa_019210 [Cucumis sativus]) HSP 1 Score: 117.1 bits (292), Expect = 8.1e-23 Identity = 70/101 (69.31%), Postives = 75/101 (74.26%), Query Frame = 0
BLAST of Lsi11G004180 vs. NCBI nr
Match: XP_038877668.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]) HSP 1 Score: 114.4 bits (285), Expect = 5.3e-22 Identity = 67/98 (68.37%), Postives = 71/98 (72.45%), Query Frame = 0
BLAST of Lsi11G004180 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 82.0 bits (201), Expect = 2.9e-12 Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 0
BLAST of Lsi11G004180 vs. NCBI nr
Match: KAG6586326.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 77.0 bits (188), Expect = 9.3e-11 Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
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