Lsi11G004180 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi11G004180
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsigma factor binding protein 1, chloroplastic-like
Locationchr11: 4405287 .. 4405565 (-)
RNA-Seq ExpressionLsi11G004180
SyntenyLsi11G004180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

mRNA sequence

ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

Coding sequence (CDS)

ATGATGGTGAAAGCCAACAACGAGTCTGAATTTCGAGCCATTGTTCAAAAGCTCACCGGCCAGCACTCGCCTGATGATCCTTTTGATCAATCAGTTGAAGAGTCTAACCATGTTTATTATCCGTCGTCGCCGTCGTCCATCCCCGCAGCTTCTTTCGATGCTTCGGCGTCCAGCCATGTCTTTGATCCGACCGGAGTCGTCGAAGGCCGTTACTGGCAAGGTCAAATGGAAGGTTCTTTTTCTGGGTTTCAAGCTTCTTCTTGTGTGAATATTTGGTGA

Protein sequence

MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDASASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW
Homology
BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A5A7VDH6 (VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001220 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 6.1e-24
Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD---- 60
           MMVKANNESEFRAIVQKLTGQHSPD    FDQSV++ NH +YP  P SS P  SFD    
Sbjct: 43  MMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDC 102

Query: 61  -ASASSHVFDPTGVV---EGRYWQGQMEGSFSGFQASSCVNIW 93
             SAS  V     +    EGRYW+G+MEGSFSGFQASSCVNIW
Sbjct: 103 YGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW 145

BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A0A0LFF9 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.9e-23
Identity = 70/101 (69.31%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------ 60
           MMVKANNESEFRAIVQKLTGQHSPD   DQSV++ NHV+YP  PSS P  SFD       
Sbjct: 41  MMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN 100

Query: 61  SASSHV-FDP-TGVVEGRYWQGQME-GSFSGFQASSCVNIW 93
           SAS  V FD      EGRYW+G+ME GSFSGFQASSCVNIW
Sbjct: 101 SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW 140

BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A6J1FJE0 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444440 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS----- 60
           MMVKANNE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+      
Sbjct: 39  MMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCP--PSS-TVTSFDSKDCYDL 98

Query: 61  ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW 93
            SS  +DP GV       G+M+ S  GFQA S V++W
Sbjct: 99  VSSDAYDPIGV-------GEMKDSLYGFQA-SYVDVW 124

BLAST of Lsi11G004180 vs. ExPASy TrEMBL
Match: A0A6J1CME4 (sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111012954 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 51/98 (52.04%), Postives = 62/98 (63.27%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDPFDQSV----EESNHVYYPSSPSSIPAASFDASA 60
           MMVKAN+ESEFR IVQ+LTGQ+SPDD F+       EE NH +YP  PS+  A S D   
Sbjct: 14  MMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPST--AVSTDPKG 73

Query: 61  -SSHVFDPTGVV-EGRYWQGQMEGSFSGFQASSCVNIW 93
               V    G + EG + Q +M+G FSGFQA SCVN +
Sbjct: 74  YYGLVSGKVGELGEGCFRQDEMQG-FSGFQA-SCVNTY 107

BLAST of Lsi11G004180 vs. NCBI nr
Match: KAA0063579.1 (VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.3e-23
Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDP--FDQSVEESNHVYYPSSP-SSIPAASFD---- 60
           MMVKANNESEFRAIVQKLTGQHSPD    FDQSV++ NH +YP  P SS P  SFD    
Sbjct: 43  MMVKANNESEFRAIVQKLTGQHSPDHDANFDQSVQDFNHAFYPPPPSSSTPGVSFDPRDC 102

Query: 61  -ASASSHVFDPTGVV---EGRYWQGQMEGSFSGFQASSCVNIW 93
             SAS  V     +    EGRYW+G+MEGSFSGFQASSCVNIW
Sbjct: 103 YGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSCVNIW 145

BLAST of Lsi11G004180 vs. NCBI nr
Match: KAE8651551.1 (hypothetical protein Csa_019210 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 8.1e-23
Identity = 70/101 (69.31%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDA------ 60
           MMVKANNESEFRAIVQKLTGQHSPD   DQSV++ NHV+YP  PSS P  SFD       
Sbjct: 41  MMVKANNESEFRAIVQKLTGQHSPDHD-DQSVQDFNHVFYPPPPSSSPGVSFDPKDCYGN 100

Query: 61  SASSHV-FDP-TGVVEGRYWQGQME-GSFSGFQASSCVNIW 93
           SAS  V FD      EGRYW+G+ME GSFSGFQASSCVNIW
Sbjct: 101 SASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSCVNIW 140

BLAST of Lsi11G004180 vs. NCBI nr
Match: XP_038877668.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 5.3e-22
Identity = 67/98 (68.37%), Postives = 71/98 (72.45%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFD-----AS 60
           MMVKANNESEFRAIVQKLTGQHSP D FDQS E+ N V+YP  PSS+ A SFD     AS
Sbjct: 16  MMVKANNESEFRAIVQKLTGQHSPHDAFDQSAEDFNQVFYP-PPSSMAAPSFDPKDCYAS 75

Query: 61  ASSHV-FDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW 93
           AS  V FD         WQG+MEGSFSGFQASSCVN W
Sbjct: 76  ASGDVLFD---------WQGEMEGSFSGFQASSCVNTW 103

BLAST of Lsi11G004180 vs. NCBI nr
Match: XP_022938305.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-12
Identity = 53/97 (54.64%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS----- 60
           MMVKANNE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+      
Sbjct: 39  MMVKANNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCP--PSS-TVTSFDSKDCYDL 98

Query: 61  ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW 93
            SS  +DP GV       G+M+ S  GFQA S V++W
Sbjct: 99  VSSDAYDPIGV-------GEMKDSLYGFQA-SYVDVW 124

BLAST of Lsi11G004180 vs. NCBI nr
Match: KAG6586326.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 9.3e-11
Identity = 51/97 (52.58%), Postives = 61/97 (62.89%), Query Frame = 0

Query: 1   MMVKANNESEFRAIVQKLTGQHSPDDPFDQSVEESNHVYYPSSPSSIPAASFDAS----- 60
           MMVKA+NE EFRAIVQKLTGQHS DD FD+S +E NH + P  PSS    SFD+      
Sbjct: 39  MMVKASNEFEFRAIVQKLTGQHSADDAFDRSPQEFNHAFCP--PSS-TVTSFDSKDCYDL 98

Query: 61  ASSHVFDPTGVVEGRYWQGQMEGSFSGFQASSCVNIW 93
            SS  +DP  V       G+M+ S  GFQA S V++W
Sbjct: 99  VSSDAYDPIRV-------GEMKDSLYGFQA-SYVDVW 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDH66.1e-2466.02VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A0A0LFF93.9e-2369.31VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=... [more]
A0A6J1FJE01.4e-1254.64sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1CME41.1e-0952.04sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=367... [more]
Match NameE-valueIdentityDescription
KAA0063579.11.3e-2366.02VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-cont... [more]
KAE8651551.18.1e-2369.31hypothetical protein Csa_019210 [Cucumis sativus][more]
XP_038877668.15.3e-2268.37sigma factor binding protein 1, chloroplastic-like [Benincasa hispida][more]
XP_022938305.12.9e-1254.64sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata][more]
KAG6586326.19.3e-1152.58Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma s... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 7..25
e-value: 3.3E-7
score: 29.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G004180.1Lsi11G004180.1mRNA