Lsi11G003830 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G003830
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Serine/threonine-protein phosphatase 7 long form-like protein
Location	chr11: 3974561 .. 3974887 (+)
RNA-Seq Expression	Lsi11G003830
Synteny	Lsi11G003830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTCGACGGCCTCCTCCGCCCTGTCTACGAGGCCTGTATCGCCGGCTGCGACTCCGAAATCCACCGTCGTCCATACCACCGCAACTGCGGCTGCGCTCTCCACAAATCCCGCCGTCAACCTTCTCACTGCTCCCATTCCAAGTCTAAATCCGTCTCCTATCCCATTCGTCGATCATGGAGCGAAGGCTGCTTGACGCTTGTCCTCGCCTCTGCTTCCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAGCCTGGTGCCGCTTTAAGCGACGACGATGATGACGATGCTCCTATTCTCTTTGCCAGGAATTGA

mRNA sequence

ATGGCCGTCGACGGCCTCCTCCGCCCTGTCTACGAGGCCTGTATCGCCGGCTGCGACTCCGAAATCCACCGTCGTCCATACCACCGCAACTGCGGCTGCGCTCTCCACAAATCCCGCCGTCAACCTTCTCACTGCTCCCATTCCAAGTCTAAATCCGTCTCCTATCCCATTCGTCGATCATGGAGCGAAGGCTGCTTGACGCTTGTCCTCGCCTCTGCTTCCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAGCCTGGTGCCGCTTTAAGCGACGACGATGATGACGATGCTCCTATTCTCTTTGCCAGGAATTGA

Coding sequence (CDS)

ATGGCCGTCGACGGCCTCCTCCGCCCTGTCTACGAGGCCTGTATCGCCGGCTGCGACTCCGAAATCCACCGTCGTCCATACCACCGCAACTGCGGCTGCGCTCTCCACAAATCCCGCCGTCAACCTTCTCACTGCTCCCATTCCAAGTCTAAATCCGTCTCCTATCCCATTCGTCGATCATGGAGCGAAGGCTGCTTGACGCTTGTCCTCGCCTCTGCTTCCTCTTCCCCTTCCTCCTCCCCTGTCGTCGGTAAGACCTCTCAGCCTGGTGCCGCTTTAAGCGACGACGATGATGACGATGCTCCTATTCTCTTTGCCAGGAATTGA

Protein sequence

MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRSWSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN

Homology

[Close]

BLAST of Lsi11G003830 vs. ExPASy TrEMBL
Match: A0A1S4E0F4 (uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.2e-49
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DGLLRPVYEACIAGCDSEIHRRPYHRNC CALHKSRRQP HCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFAR 108
           WSEGCL+L LASASSSPS+SPVVGKTSQPGAALS+DDDDDAPILFAR
Sbjct: 61  WSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILFAR 107

[Close]

BLAST of Lsi11G003830 vs. ExPASy TrEMBL
Match: A0A0A0LI78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.6e-47
Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DGLLRP+YEACI GCDSEIHRRPYHRNCGCALHKS RQP HCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPIYEACI-GCDSEIHRRPYHRNCGCALHKSSRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFAR 108
           WSEGCL+LVLASASSSPSSSPVVGKTSQPGA LS+DDDDD+PILFAR
Sbjct: 61  WSEGCLSLVLASASSSPSSSPVVGKTSQPGAPLSEDDDDDSPILFAR 106

[Close]

BLAST of Lsi11G003830 vs. ExPASy TrEMBL
Match: A0A6J1FII0 (uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC111444438 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.1e-46
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ SHC HSK KSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN 109
           WSEGCLTL  AS SSSPSSSPVVGK+SQPGAALSDDDDDDAP+ F R+
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQFNRS 108

[Close]

BLAST of Lsi11G003830 vs. ExPASy TrEMBL
Match: A0A6J1KE46 (uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 94/108 (87.04%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DGLLRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ   CSHSKSKS+ YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN 109
           WSEGCL L LASASSSPSSSPVVGKTSQPG ALSDDDDDDAP+  ARN
Sbjct: 61  WSEGCLALALASASSSPSSSPVVGKTSQPGVALSDDDDDDAPLQLARN 108

[Close]

BLAST of Lsi11G003830 vs. ExPASy TrEMBL
Match: A0A6J1G546 (uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC111450804 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 92/108 (85.19%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DGLLRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ   CSHSKSKS+ YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN 109
           WSEGCL L LASASSSPSSSPV+GKTSQPG ALS DDDDDAP+  ARN
Sbjct: 61  WSEGCLALALASASSSPSSSPVIGKTSQPGVALS-DDDDDAPLQLARN 107

[Close]

BLAST of Lsi11G003830 vs. NCBI nr
Match: XP_038889376.1 (uncharacterized protein LOC120079294 [Benincasa hispida])

HSP 1 Score: 214.2 bits (544), Expect = 5.7e-52
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQP HCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN 109
           WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDD PILFARN
Sbjct: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDTPILFARN 108

[Close]

BLAST of Lsi11G003830 vs. NCBI nr
Match: XP_016901708.1 (PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 4.5e-49
Identity = 99/107 (92.52%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DGLLRPVYEACIAGCDSEIHRRPYHRNC CALHKSRRQP HCSHSKSKS+SYPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDSEIHRRPYHRNCTCALHKSRRQPPHCSHSKSKSISYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFAR 108
           WSEGCL+L LASASSSPS+SPVVGKTSQPGAALS+DDDDDAPILFAR
Sbjct: 61  WSEGCLSLALASASSSPSTSPVVGKTSQPGAALSEDDDDDAPILFAR 107

[Close]

BLAST of Lsi11G003830 vs. NCBI nr
Match: XP_022938303.1 (uncharacterized protein LOC111444438 [Cucurbita moschata])

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-45
Identity = 94/108 (87.04%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ SHC HSK KSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN 109
           WSEGCLTL  AS SSSPSSSPVVGK+SQPGAALSDDDDDDAP+ F R+
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKSSQPGAALSDDDDDDAPVQFNRS 108

[Close]

BLAST of Lsi11G003830 vs. NCBI nr
Match: XP_022999015.1 (uncharacterized protein LOC111493529 [Cucurbita maxima])

HSP 1 Score: 192.2 bits (487), Expect = 2.3e-45
Identity = 94/108 (87.04%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DGLLRPVYEACIAGCD+EI RRPYHRNCGCALHKSRRQ   CSHSKSKS+ YPIRRS
Sbjct: 1   MAADGLLRPVYEACIAGCDTEIDRRPYHRNCGCALHKSRRQSPRCSHSKSKSIFYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN 109
           WSEGCL L LASASSSPSSSPVVGKTSQPG ALSDDDDDDAP+  ARN
Sbjct: 61  WSEGCLALALASASSSPSSSPVVGKTSQPGVALSDDDDDDAPLQLARN 108

[Close]

BLAST of Lsi11G003830 vs. NCBI nr
Match: KAG7021199.1 (hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.2 bits (487), Expect = 2.3e-45
Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRRQPSHCSHSKSKSVSYPIRRS 60
           MA DG+LRPVYEACIAGCDSEIHRRPYHRNCGCALH+SRRQ SHC HSK KSVSYPIRRS
Sbjct: 1   MAADGVLRPVYEACIAGCDSEIHRRPYHRNCGCALHESRRQLSHCYHSKYKSVSYPIRRS 60

Query: 61  WSEGCLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDAPILFARN 109
           WSEGCLTL  AS SSSPSSSPVVGK SQPGAALSDDDDDDAP+ F R+
Sbjct: 61  WSEGCLTLAFASPSSSPSSSPVVGKFSQPGAALSDDDDDDAPVQFNRS 108

[Close]

BLAST of Lsi11G003830 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 5.8e-18
Identity = 52/112 (46.43%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 1   MAVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALH----------KSRRQPSHCSHSKS 60
           MA DG+ R ++E CI+G DS I RRPYH+NCGCALH            RR PS   H  S
Sbjct: 1   MAADGIFRSIFEGCISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSS 60

Query: 61  KSVSYPIRRSWSEG-CLTLVLASASSSPSSSPVVGKTSQPGAALSDDDDDDA 102
           +S+S+PIRRSWSEG  + + L S+SSS S+   +  +S      SD   D+A
Sbjct: 61  ESISFPIRRSWSEGNIMAMNLFSSSSSSSNLQSLSSSSSLSNLASDLPVDNA 112

[Close]

BLAST of Lsi11G003830 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 2   AVDGLLRPVYEACIAGCDSEIHRRPYHRNCGCALHKSRR---QPSHCSHSKSKSVSYPIR 61
           ++DG+ R ++E CI+ CDS I RRPYH+NCGCALH+  R     + C H +S+ V +PI+
Sbjct: 5   SMDGIFRNIFEGCISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEVVMFPIQ 64

Query: 62  RSWSEG-CLTLVLASASSSP-----SSSPVVGKTSQPGAALSDDD 98
           RSWSEG  L L LAS+SSS      SSS  +   +   + +SD D
Sbjct: 65  RSWSEGNSLALHLASSSSSSNLQSLSSSSSISTLASLSSTVSDID 109

The following BLAST results are available for this feature:

BLAST of Lsi11G003830 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G003830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0F4	2.2e-49	92.52	uncharacterized protein LOC103499614 OS=Cucumis melo OX=3656 GN=LOC103499614 PE=...	[more]
A0A0A0LI78	1.6e-47	90.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009330 PE=4 SV=1	[more]
A0A6J1FII0	5.1e-46	87.04	uncharacterized protein LOC111444438 OS=Cucurbita moschata OX=3662 GN=LOC1114444...	[more]
A0A6J1KE46	1.1e-45	87.04	uncharacterized protein LOC111493529 OS=Cucurbita maxima OX=3661 GN=LOC111493529...	[more]
A0A6J1G546	1.4e-43	85.19	uncharacterized protein LOC111450804 OS=Cucurbita moschata OX=3662 GN=LOC1114508...	[more]

BLAST of Lsi11G003830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889376.1	5.7e-52	96.30	uncharacterized protein LOC120079294 [Benincasa hispida]	[more]
XP_016901708.1	4.5e-49	92.52	PREDICTED: uncharacterized protein LOC103499614 [Cucumis melo]	[more]
XP_022938303.1	1.0e-45	87.04	uncharacterized protein LOC111444438 [Cucurbita moschata]	[more]
XP_022999015.1	2.3e-45	87.04	uncharacterized protein LOC111493529 [Cucurbita maxima]	[more]
KAG7021199.1	2.3e-45	87.04	hypothetical protein SDJN02_17887, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Lsi11G003830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46490.1	5.8e-18	46.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35110.1	1.3e-17	46.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..108
None	No IPR available	PANTHER	PTHR35121:SF2	BNAC04G52100D PROTEIN	coord: 2..86
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 2..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G003830.1	Lsi11G003830.1	mRNA