Lsi11G003270 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G003270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	methyl-CpG-binding domain-containing protein 11-like
Location	chr11: 3398674 .. 3401111 (+)
RNA-Seq Expression	Lsi11G003270
Synteny	Lsi11G003270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACTGATGGTCTGGATCAAAGACTTCTGTGCATAGGTCCATAAGCTATGGTCTGGATCAAAGACTTCTGTGCATATACAAGGTCCATATCTAATCGCTTGGTTGACCCAAGCTTATCAGGAAGGTGTAATTAGAAGCCTATATATAAAATGTAACTGATGGTGATTGTCTTTGCCATTTGAAAATGGTCTCCATTCCTATTTGGTCGGTGATTCACAAGTCACAATTCATACAGATCAATGCATCTTGAAGTTTTTGCTCAAACAACAGTATGAATGCAAGTTCCCCAAGAGGGTGGGGAAGCCCACTTGTTAGGTAAAAGAATGAGCTGAGAATTGAGACACACGGCAAGGATTGGTAGATTGATCTCGGAAAGGGAGATTGAGGAATGTAGACAGTTTTTCTACCAGCAGAATTCCACTTGGAGGGAGTATCGGTAGCATCCGGAACGGCTGGCCACTTTGTAATTTTGCCTTATAGTCTTTCAGAAATGATAAAATCTCTTACTGGGGTATTCATTTCATTAGATCTTTTTCAGATGGATGTGGATGAATGGTTAGTGATGAAGAAAAAGGACGGAACTTAGTTCCAAGTAGGCAGCCTGATAGCAGATGGTCTACTGGAGGAGTTGAGCATCTTTTTTGTTAATCCACATGCTGTTTCTGAACAGCATGTCAGATTCATAGCCAGCAGGATGTGTCTTTTAAGGTTTTGAAATGAAATTTAGAATTCTCAAATTCTTGAGATTTTTCTTCTGGCATCTTGATTTTGGGAAGGTTAATTCTTTTTATCTTATACAGAAACTCAAGGTTATAGCTCTGCATCCTCATTGGTGCTGTTTATGTAACAATACCGATTGCTGACAATGTAAAGAACTCCAATTAATGCAGTCTCTTCTTCCAAAATTATGTGTCTGGCTTTTTCTTTTTTTTTTTTTCCTTTTCCCATATGCCCGGTGTTAGCTGGTGTTTTCCACTTGCCGCAGTGCTGGTTTCCTATAAAGAGAAGATGAAGATTTCATGGTGGAATACTACTTGTTTTTTTACTTTATAGAGCTATGGCTGAAGAGGAACGGAAGTGTTTTGTATGAGAGAGCGGCAGGACTTTCTTGGGTGTGAAAGGGAGAGAATGTACTTTTTTTTGGGGGGCTTCTAGATAGTTTTCTTTGGTTATTCTTATTATTATTCGTTTTGAGTACTGTAATTTATACCAATGTGAGAGAGCTTTTATCATCTTCATTGGGGAGGAGAGACTTCTTGTTTTCTGGGTTATTTGGATGTATTTTTGTCTCATTATTGAAAAATTTTCTTTCTTGCAAGAGTATCAACTCGTTGAGAGGAACATTTACTTTATTGATTGTCCTTCACTCACTCACCCTTTCAATGGAAAACTTGTAAATCTATATATCAACTTACCTACCTATAGATCTGCCTTAACCTATATTTACACAATTATTTAGCTTCTAATATCTTATATTAATAAAAAAAACAAAAAACAAAAAACAAAAAAAACAAAAAAGAGAGAACTGAGTTGCTGGTTTATTGGTTGCAACTGATTGAACGATATGAATATTTGGCAGTTTTTTCCTAAGCAAGGTAACTCCCCTAAGAAACATGAGGTTATCTTCACAACTCCAACAGGGGAGGAGATCAACAACAAAAGAAAGTTGGATCAGTACCTGAAGGCACACCCTGGTGGCCCAGCAGCTGCCGAATTTGATTGGGGCACGGGTGAGACGCCGAGGAGGTCAGCAAGGATAAGTGAAAAGGCTAAAGTGTCTCCACCAATGGAGAGTGAGCACCCAAAGAGAAAAAGAACTTCGGTGTCCAAGAAAGATCTTAAAGAAGCAGAAGCTGAACCAGAAATTCTGGAGGAGAAGAAAGAAGTTGACAATCAAGATGCTGGAAAAGATGAGAGCATACCTGATGCTGAGGTAAAAGATGACAAGAAGGAGAATCAAGATGAGAAGGAAACGAAAGACGAAGCTGCCAAAGCAGAGCCACCAAGGCCTGATGATCAGTTGAATGCAGATAATGATGCTGAAAAACAAGAACATAAGATAACCAATGAATCAGATCAAGAAAAATTGGAAAGAAACCTCAATGAGAAGGAGCCTGAAAGCTCTAAATTAAACCTCAATGAGAATCTGGAAGGAGCAAAGCATGAAGAAAAGATTGAGCAACCACAAGTTGAGGAGAAGAATGATGGTAATTTCGTTGAAGCTGTCAAACCTGACACTCTTGTATCTGATAAACAAGAAAAGGTACTAGAGAATCAAAACCCTAATCAACAGGATATTGAACTAGAAGGAGAAATCAAGGACAAAGCAGGTGCAACTGAAGAGAAGAGTGAGAAACATACTGAGACAAACAAGACTATAGAAGTCACTGAGAATGGCAACCACAGGAGTGGTACTGGTGAGGTAAAGCCTTGA

mRNA sequence

ATGGAAACTGATGGTCTGGATCAAAGACTTCTGTGCATAGGGGAGGAGATCAACAACAAAAGAAAGTTGGATCAGTACCTGAAGGCACACCCTGGTGGCCCAGCAGCTGCCGAATTTGATTGGGGCACGGGTGAGACGCCGAGGAGGTCAGCAAGGATAAGTGAAAAGGCTAAAGTGTCTCCACCAATGGAGAGTGAGCACCCAAAGAGAAAAAGAACTTCGGTGTCCAAGAAAGATCTTAAAGAAGCAGAAGCTGAACCAGAAATTCTGGAGGAGAAGAAAGAAGTTGACAATCAAGATGCTGGAAAAGATGAGAGCATACCTGATGCTGAGGTAAAAGATGACAAGAAGGAGAATCAAGATGAGAAGGAAACGAAAGACGAAGCTGCCAAAGCAGAGCCACCAAGGCCTGATGATCAGTTGAATGCAGATAATGATGCTGAAAAACAAGAACATAAGATAACCAATGAATCAGATCAAGAAAAATTGGAAAGAAACCTCAATGAGAAGGAGCCTGAAAGCTCTAAATTAAACCTCAATGAGAATCTGGAAGGAGCAAAGCATGAAGAAAAGATTGAGCAACCACAAGTTGAGGAGAAGAATGATGGTAATTTCGTTGAAGCTGTCAAACCTGACACTCTTGTATCTGATAAACAAGAAAAGGTACTAGAGAATCAAAACCCTAATCAACAGGATATTGAACTAGAAGGAGAAATCAAGGACAAAGCAGGTGCAACTGAAGAGAAGAGTGAGAAACATACTGAGACAAACAAGACTATAGAAGTCACTGAGAATGGCAACCACAGGAGTGGTACTGGTGAGGTAAAGCCTTGA

Coding sequence (CDS)

ATGGAAACTGATGGTCTGGATCAAAGACTTCTGTGCATAGGGGAGGAGATCAACAACAAAAGAAAGTTGGATCAGTACCTGAAGGCACACCCTGGTGGCCCAGCAGCTGCCGAATTTGATTGGGGCACGGGTGAGACGCCGAGGAGGTCAGCAAGGATAAGTGAAAAGGCTAAAGTGTCTCCACCAATGGAGAGTGAGCACCCAAAGAGAAAAAGAACTTCGGTGTCCAAGAAAGATCTTAAAGAAGCAGAAGCTGAACCAGAAATTCTGGAGGAGAAGAAAGAAGTTGACAATCAAGATGCTGGAAAAGATGAGAGCATACCTGATGCTGAGGTAAAAGATGACAAGAAGGAGAATCAAGATGAGAAGGAAACGAAAGACGAAGCTGCCAAAGCAGAGCCACCAAGGCCTGATGATCAGTTGAATGCAGATAATGATGCTGAAAAACAAGAACATAAGATAACCAATGAATCAGATCAAGAAAAATTGGAAAGAAACCTCAATGAGAAGGAGCCTGAAAGCTCTAAATTAAACCTCAATGAGAATCTGGAAGGAGCAAAGCATGAAGAAAAGATTGAGCAACCACAAGTTGAGGAGAAGAATGATGGTAATTTCGTTGAAGCTGTCAAACCTGACACTCTTGTATCTGATAAACAAGAAAAGGTACTAGAGAATCAAAACCCTAATCAACAGGATATTGAACTAGAAGGAGAAATCAAGGACAAAGCAGGTGCAACTGAAGAGAAGAGTGAGAAACATACTGAGACAAACAAGACTATAGAAGTCACTGAGAATGGCAACCACAGGAGTGGTACTGGTGAGGTAAAGCCTTGA

Protein sequence

METDGLDQRLLCIGEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRTSVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKDDKKENQDEKETKDEAAKAEPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEKIEQPQVEEKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAGATEEKSEKHTETNKTIEVTENGNHRSGTGEVKP

Homology

[Close]

BLAST of Lsi11G003270 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-14
Identity = 91/258 (35.27%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHP--KRK 73
           GEEI+++++L+QYLKAHPG P  +EF+W TGETPRRS+RIS+K K + P   + P  K++
Sbjct: 42  GEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVKATTPTPDKEPLLKKR 101

Query: 74  RTSVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKDDKKENQDEKETKDEAAK 133
           R+S++KKD KEA    E  EE    +N D  KD    +AE + +K     EKE   E A+
Sbjct: 102 RSSLTKKDNKEA---AEKNEEAAVKENMDVDKDGKTENAEAEKEK-----EKEGVTEIAE 161

Query: 134 AEPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEK 193
           AE    + +        K+  K T    + + E    EKE E  K    EN E     +K
Sbjct: 162 AEKENNEGEKTEAEKVNKEGEK-TEAGKEGQTEIAEAEKEKEGEKAEA-ENKEAEVVRDK 221

Query: 194 IEQPQVE----EKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAG--A 253
            E  +V+    EK  G+   A +P      K E + + +    Q++  E +++ K     
Sbjct: 222 KESMEVDTSELEKKAGSGEGAEEP-----SKVEGLKDTEMKEAQEVVTEADVEKKPAEEK 281

Query: 254 TEEKSEKHTETNKTIEVT 264
           TE K    TE N    VT
Sbjct: 282 TENKGSVTTEANGEQNVT 284

[Close]

BLAST of Lsi11G003270 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.8e-12
Identity = 76/209 (36.36%), Postives = 105/209 (50.24%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPK---R 73
           GEEI+N+++L+QYLK+HPG PA AEFDW T  TPRRSARISEK K +P  + E PK   R
Sbjct: 42  GEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTKATPSPDKEPPKKRGR 101

Query: 74  KRTSVSKKD---------------LKEAEAEPE--ILEEKKEVDNQDAGKDESIPDAEVK 133
            ++ VSKKD               +K+ E  P   I E +   D   +G+ E + DA   
Sbjct: 102 TKSPVSKKDAEGEKSEGGGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDA--- 161

Query: 134 DDKKENQDEKETKDEAAKAE--PPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKE 193
              KEN   +ET + A   E      +  L++ +D  K+  K  +    EK   ++ +K 
Sbjct: 162 ---KENIVAEETPNAAPVQEEGESMKEKALDSVDDKSKETDKEKDTGSIEKNSVDVEKKT 221

Query: 194 PESSKLNLNENLEGAKHEEKIEQPQVEEK 201
            E+S    N   E   HEE     + E K
Sbjct: 222 VEASDEKKNSEAETRNHEENGLTTEAEGK 244

[Close]

BLAST of Lsi11G003270 vs. ExPASy TrEMBL
Match: A0A5D3BH67 (Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00350 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 5.2e-119
Identity = 243/265 (91.70%), Postives = 253/265 (95.47%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAK SPPMESEHPKRKRT
Sbjct: 49  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKASPPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKD-DKKENQDEKETKDEAAKA 133
           SVSKKDLKE EAEPE+LEEKKEVDN DAGKDES+ DAEVKD +KKEN DEKETK+EAA+A
Sbjct: 109 SVSKKDLKETEAEPEVLEEKKEVDNPDAGKDESMADAEVKDANKKENIDEKETKNEAAEA 168

Query: 134 EPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEKI 193
           EPP+PDDQLNADN+AEKQEHKITNES+QEKLE NLNEKEPESSKLNLNENLEGAKHEEKI
Sbjct: 169 EPPKPDDQLNADNEAEKQEHKITNESNQEKLEGNLNEKEPESSKLNLNENLEGAKHEEKI 228

Query: 194 EQPQVEEKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAGATEEKSEK 253
           EQPQV EKNDGNF EAVKPDTLVSDKQE  LENQNPNQQ+IELEGEIKDKAGA EEKSEK
Sbjct: 229 EQPQV-EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQEIELEGEIKDKAGAAEEKSEK 288

Query: 254 HTETNKTIEVTENGNHRSGTGEVKP 278
           HTETNKTIEVTENGNHR+GTGEVKP
Sbjct: 289 HTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of Lsi11G003270 vs. ExPASy TrEMBL
Match: A0A1S3C687 (methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=LOC103497143 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 5.2e-119
Identity = 243/265 (91.70%), Postives = 253/265 (95.47%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAK SPPMESEHPKRKRT
Sbjct: 49  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKASPPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKD-DKKENQDEKETKDEAAKA 133
           SVSKKDLKE EAEPE+LEEKKEVDN DAGKDES+ DAEVKD +KKEN DEKETK+EAA+A
Sbjct: 109 SVSKKDLKETEAEPEVLEEKKEVDNPDAGKDESMADAEVKDANKKENIDEKETKNEAAEA 168

Query: 134 EPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEKI 193
           EPP+PDDQLNADN+AEKQEHKITNES+QEKLE NLNEKEPESSKLNLNENLEGAKHEEKI
Sbjct: 169 EPPKPDDQLNADNEAEKQEHKITNESNQEKLEGNLNEKEPESSKLNLNENLEGAKHEEKI 228

Query: 194 EQPQVEEKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAGATEEKSEK 253
           EQPQV EKNDGNF EAVKPDTLVSDKQE  LENQNPNQQ+IELEGEIKDKAGA EEKSEK
Sbjct: 229 EQPQV-EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQEIELEGEIKDKAGAAEEKSEK 288

Query: 254 HTETNKTIEVTENGNHRSGTGEVKP 278
           HTETNKTIEVTENGNHR+GTGEVKP
Sbjct: 289 HTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of Lsi11G003270 vs. ExPASy TrEMBL
Match: A0A0A0LG01 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G006830 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.1e-116
Identity = 239/265 (90.19%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT
Sbjct: 26  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 85

Query: 74  SVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKD-DKKENQDEKETKDEAAKA 133
           SVSKKDLKE EAEPE++EEKKEVDN DAGKDES+ DAEVKD DKKENQDEKETK+EAA+A
Sbjct: 86  SVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAEVKDADKKENQDEKETKNEAAEA 145

Query: 134 EPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEKI 193
           EPP+PDDQLNA N+AEKQEHKITNES+QEK E NLNEKEPESSKLNLNEN+EGAKHEE I
Sbjct: 146 EPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKEPESSKLNLNENVEGAKHEEMI 205

Query: 194 EQPQVEEKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAGATEEKSEK 253
           E+PQV EKNDGNF EAVKPDTLVSDKQE  LENQNPNQQDIELE EIKDKAG  EEKSEK
Sbjct: 206 EKPQV-EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQDIELEEEIKDKAGEAEEKSEK 265

Query: 254 HTETNKTIEVTENGNHRSGTGEVKP 278
           HTETNKTIEVTENGNHR+GTGEVKP
Sbjct: 266 HTETNKTIEVTENGNHRNGTGEVKP 289

[Close]

BLAST of Lsi11G003270 vs. ExPASy TrEMBL
Match: A0A6J1G2N9 (methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita moschata OX=3662 GN=LOC111450270 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 5.5e-105
Identity = 226/298 (75.84%), Postives = 243/298 (81.54%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEE +NKRKLDQYLK+HPGGPA+AEFDWGTGETPRRSARISEKAKV  PMESEHPKRKRT
Sbjct: 49  GEEFSNKRKLDQYLKSHPGGPASAEFDWGTGETPRRSARISEKAKVISPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEP-EILEEKKEVDNQDAGKDESIPDAEVKD------------------ 133
           SVSKK LKE E EP E+ EEKKEVDNQDAGKDE+I DAEVKD                  
Sbjct: 109 SVSKKGLKEIETEPAEVREEKKEVDNQDAGKDETIADAEVKDDDKNETKDEAAEADPPKP 168

Query: 134 ---------------DKKENQDEKETKDEAAKAEPPRPDDQLNADNDAEKQEHKITNESD 193
                          DKKENQDEKETKDEAA+AEPP+PDDQLNADNDAEKQEHKIT+ES+
Sbjct: 169 DDQLNADNDADIKDADKKENQDEKETKDEAAEAEPPKPDDQLNADNDAEKQEHKITSESE 228

Query: 194 QEKLERNLNEKEPESSKLNLNENLEGAKHEEKIEQPQVEEKNDGNFVEAVKPDTLVSDKQ 253
           QEKLERNLNEKEPESSKLNLNENLEGAKH+EKIEQPQVEEKND    E VKPDTL+SD+Q
Sbjct: 229 QEKLERNLNEKEPESSKLNLNENLEGAKHDEKIEQPQVEEKNDSTLGETVKPDTLLSDRQ 288

Query: 254 EKVLENQNPNQQDIELEGEIKDKAGATEEKSEKHTETNKTIEVTENGNHRSGTGEVKP 278
           EK  ENQ P +QDIELEGEIKDKA ATEEK+EKHTETNK+IE TENG+HR+  GEVKP
Sbjct: 289 EKEQENQKPCEQDIELEGEIKDKAAATEEKNEKHTETNKSIEATENGSHRNDAGEVKP 346

[Close]

BLAST of Lsi11G003270 vs. ExPASy TrEMBL
Match: A0A6J1KA38 (methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita maxima OX=3661 GN=LOC111493630 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 6.1e-104
Identity = 225/298 (75.50%), Postives = 242/298 (81.21%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEE +NKRKLDQYLK+HPG PA+AEFDWGTGETPRRSARISEKAKV  PMESEHPKRKRT
Sbjct: 49  GEEFSNKRKLDQYLKSHPGCPASAEFDWGTGETPRRSARISEKAKVISPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEP-EILEEKKEVDNQDAGKDESIPDAEVKD------------------ 133
           SVSKK LKE E EP E+LEEKKEVDNQDAGK ESI DAEVKD                  
Sbjct: 109 SVSKKGLKEIETEPAEVLEEKKEVDNQDAGKHESIADAEVKDDDKNKTEDEAAEADPPKP 168

Query: 134 ---------------DKKENQDEKETKDEAAKAEPPRPDDQLNADNDAEKQEHKITNESD 193
                          DKKENQD+KETKDEAA+AEPP+PDDQLNADNDAEKQEHKIT+ES+
Sbjct: 169 DDQLNADNDADIKDADKKENQDKKETKDEAAEAEPPKPDDQLNADNDAEKQEHKITSESE 228

Query: 194 QEKLERNLNEKEPESSKLNLNENLEGAKHEEKIEQPQVEEKNDGNFVEAVKPDTLVSDKQ 253
           QEKLERNLNEKEPESSKLNLNENLEGAKH+EKIEQPQVEEKND N  E VKPDTL+SD+Q
Sbjct: 229 QEKLERNLNEKEPESSKLNLNENLEGAKHDEKIEQPQVEEKNDSNLGETVKPDTLLSDRQ 288

Query: 254 EKVLENQNPNQQDIELEGEIKDKAGATEEKSEKHTETNKTIEVTENGNHRSGTGEVKP 278
           EK  ENQ P +QDIELEGEI DKA ATEEK+EKHTETNK+IE TENG+HR+  GEVKP
Sbjct: 289 EKEQENQKPYEQDIELEGEINDKAAATEEKNEKHTETNKSIEATENGSHRNDAGEVKP 346

[Close]

BLAST of Lsi11G003270 vs. NCBI nr
Match: XP_008457463.1 (PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >KAA0063499.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa] >TYJ97825.1 methyl-CpG-binding domain-containing protein 11-like [Cucumis melo var. makuwa])

HSP 1 Score: 437.2 bits (1123), Expect = 1.1e-118
Identity = 243/265 (91.70%), Postives = 253/265 (95.47%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAK SPPMESEHPKRKRT
Sbjct: 49  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKASPPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKD-DKKENQDEKETKDEAAKA 133
           SVSKKDLKE EAEPE+LEEKKEVDN DAGKDES+ DAEVKD +KKEN DEKETK+EAA+A
Sbjct: 109 SVSKKDLKETEAEPEVLEEKKEVDNPDAGKDESMADAEVKDANKKENIDEKETKNEAAEA 168

Query: 134 EPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEKI 193
           EPP+PDDQLNADN+AEKQEHKITNES+QEKLE NLNEKEPESSKLNLNENLEGAKHEEKI
Sbjct: 169 EPPKPDDQLNADNEAEKQEHKITNESNQEKLEGNLNEKEPESSKLNLNENLEGAKHEEKI 228

Query: 194 EQPQVEEKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAGATEEKSEK 253
           EQPQV EKNDGNF EAVKPDTLVSDKQE  LENQNPNQQ+IELEGEIKDKAGA EEKSEK
Sbjct: 229 EQPQV-EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQEIELEGEIKDKAGAAEEKSEK 288

Query: 254 HTETNKTIEVTENGNHRSGTGEVKP 278
           HTETNKTIEVTENGNHR+GTGEVKP
Sbjct: 289 HTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of Lsi11G003270 vs. NCBI nr
Match: XP_004139304.1 (methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8651531.1 hypothetical protein Csa_019489 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 2.2e-116
Identity = 239/265 (90.19%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT
Sbjct: 49  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKD-DKKENQDEKETKDEAAKA 133
           SVSKKDLKE EAEPE++EEKKEVDN DAGKDES+ DAEVKD DKKENQDEKETK+EAA+A
Sbjct: 109 SVSKKDLKETEAEPEVMEEKKEVDNPDAGKDESMADAEVKDADKKENQDEKETKNEAAEA 168

Query: 134 EPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEKI 193
           EPP+PDDQLNA N+AEKQEHKITNES+QEK E NLNEKEPESSKLNLNEN+EGAKHEE I
Sbjct: 169 EPPKPDDQLNAGNEAEKQEHKITNESNQEKSEGNLNEKEPESSKLNLNENVEGAKHEEMI 228

Query: 194 EQPQVEEKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAGATEEKSEK 253
           E+PQV EKNDGNF EAVKPDTLVSDKQE  LENQNPNQQDIELE EIKDKAG  EEKSEK
Sbjct: 229 EKPQV-EKNDGNFAEAVKPDTLVSDKQENALENQNPNQQDIELEEEIKDKAGEAEEKSEK 288

Query: 254 HTETNKTIEVTENGNHRSGTGEVKP 278
           HTETNKTIEVTENGNHR+GTGEVKP
Sbjct: 289 HTETNKTIEVTENGNHRNGTGEVKP 312

[Close]

BLAST of Lsi11G003270 vs. NCBI nr
Match: XP_038889539.1 (methyl-CpG-binding domain-containing protein 11-like [Benincasa hispida])

HSP 1 Score: 427.2 bits (1097), Expect = 1.1e-115
Identity = 241/264 (91.29%), Postives = 246/264 (93.18%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEEI NKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAK SPPMESEHPKRKRT
Sbjct: 49  GEEIKNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKASPPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKDDKKENQDEKETKDEAAKAE 133
           SVSKKDLKE EAEPE+LEEKKE DNQDAGKD S  D EVKD KKENQDEKETKDEAA+AE
Sbjct: 109 SVSKKDLKETEAEPEVLEEKKEFDNQDAGKDGSRDDTEVKDGKKENQDEKETKDEAAEAE 168

Query: 134 PPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEKIE 193
           PP+P DQLNADNDAEK E+KITNESDQEKLE NLNEKEPESSKLNLNENLEGAKHEEKIE
Sbjct: 169 PPKPVDQLNADNDAEK-EYKITNESDQEKLETNLNEKEPESSKLNLNENLEGAKHEEKIE 228

Query: 194 QPQVEEKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAGATEEKSEKH 253
           QPQVEE NDGNF EAVKPDTLVSDKQEK LENQNPNQQDIELEGEIKDKAGATEEKSEKH
Sbjct: 229 QPQVEE-NDGNFGEAVKPDTLVSDKQEKALENQNPNQQDIELEGEIKDKAGATEEKSEKH 288

Query: 254 TETNKTIEVTENGNHRSGTGEVKP 278
           TETNKTIEVTENGNHR+G  EV P
Sbjct: 289 TETNKTIEVTENGNHRNGGNEVNP 310

[Close]

BLAST of Lsi11G003270 vs. NCBI nr
Match: XP_023545855.1 (methyl-CpG-binding domain-containing protein 11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 4.6e-106
Identity = 228/298 (76.51%), Postives = 245/298 (82.21%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEE +NKRKLDQYLK+HPGGPA+AEFDWGTGETPRRSARISEKAKV  PMESEHPKRKRT
Sbjct: 49  GEEFSNKRKLDQYLKSHPGGPASAEFDWGTGETPRRSARISEKAKVISPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEP-EILEEKKEVDNQDAGKDESIPDAEVKD------------------ 133
           SVSKK LKE E EP E+LEEKKEVDNQDAGKDESI DAEVKD                  
Sbjct: 109 SVSKKGLKEIETEPAEVLEEKKEVDNQDAGKDESIADAEVKDDDKNETKDEAAEADPPKP 168

Query: 134 ---------------DKKENQDEKETKDEAAKAEPPRPDDQLNADNDAEKQEHKITNESD 193
                          DKKENQDEKETKDEAA+AEPP+PDDQLNADNDAEKQEHKIT+ES+
Sbjct: 169 DDQLNADNDADIKDADKKENQDEKETKDEAAEAEPPKPDDQLNADNDAEKQEHKITSESE 228

Query: 194 QEKLERNLNEKEPESSKLNLNENLEGAKHEEKIEQPQVEEKNDGNFVEAVKPDTLVSDKQ 253
           QEKLERNLNEKEPESSKLNLNENLEGAKH+E+IEQPQVEEKND N  E VKPDTL+SD+Q
Sbjct: 229 QEKLERNLNEKEPESSKLNLNENLEGAKHDEQIEQPQVEEKNDSNLGETVKPDTLLSDRQ 288

Query: 254 EKVLENQNPNQQDIELEGEIKDKAGATEEKSEKHTETNKTIEVTENGNHRSGTGEVKP 278
           EK  ENQ P +QDIELEGEIKDKA ATEEK+EKHTETNK+IE TENG+HR+  GEVKP
Sbjct: 289 EKEQENQKPYEQDIELEGEIKDKAAATEEKNEKHTETNKSIEATENGSHRNDAGEVKP 346

[Close]

BLAST of Lsi11G003270 vs. NCBI nr
Match: XP_022946072.1 (methyl-CpG-binding domain-containing protein 11-like [Cucurbita moschata])

HSP 1 Score: 390.6 bits (1002), Expect = 1.1e-104
Identity = 226/298 (75.84%), Postives = 243/298 (81.54%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPKRKRT 73
           GEE +NKRKLDQYLK+HPGGPA+AEFDWGTGETPRRSARISEKAKV  PMESEHPKRKRT
Sbjct: 49  GEEFSNKRKLDQYLKSHPGGPASAEFDWGTGETPRRSARISEKAKVISPMESEHPKRKRT 108

Query: 74  SVSKKDLKEAEAEP-EILEEKKEVDNQDAGKDESIPDAEVKD------------------ 133
           SVSKK LKE E EP E+ EEKKEVDNQDAGKDE+I DAEVKD                  
Sbjct: 109 SVSKKGLKEIETEPAEVREEKKEVDNQDAGKDETIADAEVKDDDKNETKDEAAEADPPKP 168

Query: 134 ---------------DKKENQDEKETKDEAAKAEPPRPDDQLNADNDAEKQEHKITNESD 193
                          DKKENQDEKETKDEAA+AEPP+PDDQLNADNDAEKQEHKIT+ES+
Sbjct: 169 DDQLNADNDADIKDADKKENQDEKETKDEAAEAEPPKPDDQLNADNDAEKQEHKITSESE 228

Query: 194 QEKLERNLNEKEPESSKLNLNENLEGAKHEEKIEQPQVEEKNDGNFVEAVKPDTLVSDKQ 253
           QEKLERNLNEKEPESSKLNLNENLEGAKH+EKIEQPQVEEKND    E VKPDTL+SD+Q
Sbjct: 229 QEKLERNLNEKEPESSKLNLNENLEGAKHDEKIEQPQVEEKNDSTLGETVKPDTLLSDRQ 288

Query: 254 EKVLENQNPNQQDIELEGEIKDKAGATEEKSEKHTETNKTIEVTENGNHRSGTGEVKP 278
           EK  ENQ P +QDIELEGEIKDKA ATEEK+EKHTETNK+IE TENG+HR+  GEVKP
Sbjct: 289 EKEQENQKPCEQDIELEGEIKDKAAATEEKNEKHTETNKSIEATENGSHRNDAGEVKP 346

[Close]

BLAST of Lsi11G003270 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-15
Identity = 91/258 (35.27%), Postives = 131/258 (50.78%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHP--KRK 73
           GEEI+++++L+QYLKAHPG P  +EF+W TGETPRRS+RIS+K K + P   + P  K++
Sbjct: 42  GEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVKATTPTPDKEPLLKKR 101

Query: 74  RTSVSKKDLKEAEAEPEILEEKKEVDNQDAGKDESIPDAEVKDDKKENQDEKETKDEAAK 133
           R+S++KKD KEA    E  EE    +N D  KD    +AE + +K     EKE   E A+
Sbjct: 102 RSSLTKKDNKEA---AEKNEEAAVKENMDVDKDGKTENAEAEKEK-----EKEGVTEIAE 161

Query: 134 AEPPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKEPESSKLNLNENLEGAKHEEK 193
           AE    + +        K+  K T    + + E    EKE E  K    EN E     +K
Sbjct: 162 AEKENNEGEKTEAEKVNKEGEK-TEAGKEGQTEIAEAEKEKEGEKAEA-ENKEAEVVRDK 221

Query: 194 IEQPQVE----EKNDGNFVEAVKPDTLVSDKQEKVLENQNPNQQDIELEGEIKDKAG--A 253
            E  +V+    EK  G+   A +P      K E + + +    Q++  E +++ K     
Sbjct: 222 KESMEVDTSELEKKAGSGEGAEEP-----SKVEGLKDTEMKEAQEVVTEADVEKKPAEEK 281

Query: 254 TEEKSEKHTETNKTIEVT 264
           TE K    TE N    VT
Sbjct: 282 TENKGSVTTEANGEQNVT 284

[Close]

BLAST of Lsi11G003270 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-13
Identity = 76/209 (36.36%), Postives = 105/209 (50.24%), Query Frame = 0


Query: 14  GEEINNKRKLDQYLKAHPGGPAAAEFDWGTGETPRRSARISEKAKVSPPMESEHPK---R 73
           GEEI+N+++L+QYLK+HPG PA AEFDW T  TPRRSARISEK K +P  + E PK   R
Sbjct: 42  GEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTKATPSPDKEPPKKRGR 101

Query: 74  KRTSVSKKD---------------LKEAEAEPE--ILEEKKEVDNQDAGKDESIPDAEVK 133
            ++ VSKKD               +K+ E  P   I E +   D   +G+ E + DA   
Sbjct: 102 TKSPVSKKDAEGEKSEGGGEENSHVKDTEMNPPEGIAENENVTDKNGSGETERVNDA--- 161

Query: 134 DDKKENQDEKETKDEAAKAE--PPRPDDQLNADNDAEKQEHKITNESDQEKLERNLNEKE 193
              KEN   +ET + A   E      +  L++ +D  K+  K  +    EK   ++ +K 
Sbjct: 162 ---KENIVAEETPNAAPVQEEGESMKEKALDSVDDKSKETDKEKDTGSIEKNSVDVEKKT 221

Query: 194 PESSKLNLNENLEGAKHEEKIEQPQVEEK 201
            E+S    N   E   HEE     + E K
Sbjct: 222 VEASDEKKNSEAETRNHEENGLTTEAEGK 244

The following BLAST results are available for this feature:

BLAST of Lsi11G003270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI36	1.9e-14	35.27	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LW00	1.8e-12	36.36	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lsi11G003270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BH67	5.2e-119	91.70	Methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo var. makuwa...	[more]
A0A1S3C687	5.2e-119	91.70	methyl-CpG-binding domain-containing protein 11-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A0A0LG01	1.1e-116	90.19	MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G006830 PE=4 SV...	[more]
A0A6J1G2N9	5.5e-105	75.84	methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1KA38	6.1e-104	75.50	methyl-CpG-binding domain-containing protein 11-like OS=Cucurbita maxima OX=3661...	[more]

BLAST of Lsi11G003270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457463.1	1.1e-118	91.70	PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Cucumis melo] >...	[more]
XP_004139304.1	2.2e-116	90.19	methyl-CpG-binding domain-containing protein 11 [Cucumis sativus] >KAE8651531.1 ...	[more]
XP_038889539.1	1.1e-115	91.29	methyl-CpG-binding domain-containing protein 11-like [Benincasa hispida]	[more]
XP_023545855.1	4.6e-106	76.51	methyl-CpG-binding domain-containing protein 11-like [Cucurbita pepo subsp. pepo...	[more]
XP_022946072.1	1.1e-104	75.84	methyl-CpG-binding domain-containing protein 11-like [Cucurbita moschata]	[more]

BLAST of Lsi11G003270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15340.1	1.4e-15	35.27	methyl-CPG-binding domain 10	[more]
AT3G15790.1	1.3e-13	36.36	methyl-CPG-binding domain 11	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..259
None	No IPR available	PANTHER	PTHR33729:SF6	METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 11-LIKE	coord: 14..270
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 14..270
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 14..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G003270.1	Lsi11G003270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding