Lsi11G003240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G003240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	chr11: 3339339 .. 3341532 (+)
RNA-Seq Expression	Lsi11G003240
Synteny	Lsi11G003240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAATTTCTCTCCTTCTTCATCTTCCTATAAATTCAAAACCATTTACAAATCTCTCTCAGTTGCAGAGAGAAATAAGAGAGAGAGAGGGTTTTTGTATAGTCCTAAAACCCTTTCTTCTTCCTTTCCTCACGAATTTCCCTTCTTCAATCATGCTTCTCAGAAGTGTATCAACTCCAATTCTCAATACATGGAAACCCCATTTGAAAGAACCTTCCCCGGGGACCGAAATCGTCCACCAAATTCCTAAATCACGCCCCCTCACACTCTGTGCTTCTTCGAAATTGTTGCCGCCGCCACCGATGATCGGCGGTCCGGCGATCAAGATGATGGGAATCCTCTCGGGGTCCGATCTGAGTAACCTCTCAGTGGTGGCGAAGAGGACTCCGAGAATGGGATTGTGCTGTGTTGTCGATGAAGTGGGGGAGAGTTCCGATTGCGATGGCGAAATGGTCGGCGTTTTGGTTGATGGTGGAGTCAGCGGCGATGGCAATGGCGGTGGTTCCGATGGCGGCGATGATGGTTGTTTTGATTCTTGTGATTCGGATAGTGAGAATGACAAGGCGGAATTGTTTTTTCAGAGGATGCTAGAGGCGAACCCTCAGAATTCGTTGTTACTAAGCAATTATGCTCAGTTCTTGAAGGAGGTACATTATATGAAAATTGAAATTCCATCTTCTTTAATTTTCTTGAAATTCTTTACATTACATTTGGTTCTGTTGAAGAAATTTTTGGTAAGAGAATGTAATGAAAGATGATCATCCATTTTACTCTTCTCTGTTAAGTGAGGAAATGGAAATCTTGTTGTCTCAAATAGAAGTTCTTGCAAAATTTTGTTCTGACCATTTACCATTCATTTTCTTGAATGTTTATAAGGATCTTGATTGTCTGAACTGATCTTATTTCAAAGATCTTTGATCTGCTTTTGCTTCTTAGAACTAACTGTTGGCTTAGAATAGGCTTGGTATGAAACACTGGAAGATGAACAAAGTGGATTTTAAGAATCTGATTGAGTTCACAAAAAATACCCAACAAAGTTGATATTATCTTGTTAGCATCTCTTAAATCAGAGTAGTCTTAAAGTAAATAAAGATTTGGTTCTTGAAACTTTTCAATTTGTCTTTTGAACTAACAAATTTCATTAAATCTTCCTAATATTTTCACAAATAGGGACTAAATCATAACAAATTTTGAAAAAGTACATATTGGATTTTATATTGAAGTTGCTACAAGAATGTGAAATGCCTTAGGGGTGAAGTTTGAACTATTGTTTTTACTATTGTACGATTGTATACCTAAAAGAAAGAAGTTGTGGTAAAGGCTTGTGATTTGTCCTAGTTTCATTCTCAGCAATTTGTTGATTTTCTCTGCTAAACAGGTTCGTGGAGACCTGATAAAAGCTGAAGAGTATTGTGGAAGAGCAGTGTTAGTAAATCCCTATGATGGAAGTTTGATGTCAATGTATGCCGATTTGATATGGAATAATCATAAGGATGCCTCCCGAGCTGAGCGTTATCATCTTCAAGCTACTGAAACTTCCCCTGATAATAGGTATAAAAAATGGGATGATCCTGCTTTTTCATAAACTAAAGCTATATAAGCATCCAATCCAAGCATAGCTTAGTGTGGATAAGGATACTAATTATCATTCCAATAGTAGTCTGTTCGTTCTCCACCCTGCAATTGTCGAGCTAGAAAAAGAAAAACATTGAGTTTCTGCAAAACTTTTGACACACAATACCATTTCTGTTTAACTCTGCAAATTTTTGCTATTTGGGACATTGTAATTGAATTGTGGGGGGTTAATCTTGTTTTGTTTGTTTAACTGGTGCAGTTTTGTTTTTGCCTCTTATGCACGGTTTCTTTGGGAAGCCGAAGAAGTCGATGACAAAGAAGCTGGAATCGACAACTTTGGCAAGCCATGCTCACCTCGTTTTCCTTTTGGAGTTCAACCTCCATTCACTCCTCTAACTGCGTCTTCTTAGTTTCTCTCTCAAGTACATTCATAGTGCAGATCTTCTTAGGTAGTTTTTTCTTTAACCATGAAAGCATAATAAGTTTGCTCGCAGAAAGCTGTAGCGAATATTCTTTTTCCCTCACCACTTTGATTTCTCAAGATGTGCTTTGTATAGACAATAAAACAAATAAAACTAATAAGGAATGCCAATTTGCAAAGAATCTTCATCTCTTTCTTT

mRNA sequence

GTAAATTTCTCTCCTTCTTCATCTTCCTATAAATTCAAAACCATTTACAAATCTCTCTCAGTTGCAGAGAGAAATAAGAGAGAGAGAGGGTTTTTGTATAGTCCTAAAACCCTTTCTTCTTCCTTTCCTCACGAATTTCCCTTCTTCAATCATGCTTCTCAGAAGTGTATCAACTCCAATTCTCAATACATGGAAACCCCATTTGAAAGAACCTTCCCCGGGGACCGAAATCGTCCACCAAATTCCTAAATCACGCCCCCTCACACTCTGTGCTTCTTCGAAATTGTTGCCGCCGCCACCGATGATCGGCGGTCCGGCGATCAAGATGATGGGAATCCTCTCGGGGTCCGATCTGAGTAACCTCTCAGTGGTGGCGAAGAGGACTCCGAGAATGGGATTGTGCTGTGTTGTCGATGAAGTGGGGGAGAGTTCCGATTGCGATGGCGAAATGGTCGGCGTTTTGGTTGATGGTGGAGTCAGCGGCGATGGCAATGGCGGTGGTTCCGATGGCGGCGATGATGGTTGTTTTGATTCTTGTGATTCGGATAGTGAGAATGACAAGGCGGAATTGTTTTTTCAGAGGATGCTAGAGGCGAACCCTCAGAATTCGTTGTTACTAAGCAATTATGCTCAGTTCTTGAAGGAGGTTCGTGGAGACCTGATAAAAGCTGAAGAGTATTGTGGAAGAGCAGTGTTAGTAAATCCCTATGATGGAAGTTTGATGTCAATGTATGCCGATTTGATATGGAATAATCATAAGGATGCCTCCCGAGCTGAGCGTTATCATCTTCAAGCTACTGAAACTTCCCCTGATAATAGTTTTGTTTTTGCCTCTTATGCACGGTTTCTTTGGGAAGCCGAAGAAGTCGATGACAAAGAAGCTGGAATCGACAACTTTGGCAAGCCATGCTCACCTCGTTTTCCTTTTGGAGTTCAACCTCCATTCACTCCTCTAACTGCGTCTTCTTAGTTTCTCTCTCAAGTACATTCATAGTGCAGATCTTCTTAGGTAGTTTTTTCTTTAACCATGAAAGCATAATAAGTTTGCTCGCAGAAAGCTGTAGCGAATATTCTTTTTCCCTCACCACTTTGATTTCTCAAGATGTGCTTTGTATAGACAATAAAACAAATAAAACTAATAAGGAATGCCAATTTGCAAAGAATCTTCATCTCTTTCTTT

Coding sequence (CDS)

ATGCTTCTCAGAAGTGTATCAACTCCAATTCTCAATACATGGAAACCCCATTTGAAAGAACCTTCCCCGGGGACCGAAATCGTCCACCAAATTCCTAAATCACGCCCCCTCACACTCTGTGCTTCTTCGAAATTGTTGCCGCCGCCACCGATGATCGGCGGTCCGGCGATCAAGATGATGGGAATCCTCTCGGGGTCCGATCTGAGTAACCTCTCAGTGGTGGCGAAGAGGACTCCGAGAATGGGATTGTGCTGTGTTGTCGATGAAGTGGGGGAGAGTTCCGATTGCGATGGCGAAATGGTCGGCGTTTTGGTTGATGGTGGAGTCAGCGGCGATGGCAATGGCGGTGGTTCCGATGGCGGCGATGATGGTTGTTTTGATTCTTGTGATTCGGATAGTGAGAATGACAAGGCGGAATTGTTTTTTCAGAGGATGCTAGAGGCGAACCCTCAGAATTCGTTGTTACTAAGCAATTATGCTCAGTTCTTGAAGGAGGTTCGTGGAGACCTGATAAAAGCTGAAGAGTATTGTGGAAGAGCAGTGTTAGTAAATCCCTATGATGGAAGTTTGATGTCAATGTATGCCGATTTGATATGGAATAATCATAAGGATGCCTCCCGAGCTGAGCGTTATCATCTTCAAGCTACTGAAACTTCCCCTGATAATAGTTTTGTTTTTGCCTCTTATGCACGGTTTCTTTGGGAAGCCGAAGAAGTCGATGACAAAGAAGCTGGAATCGACAACTTTGGCAAGCCATGCTCACCTCGTTTTCCTTTTGGAGTTCAACCTCCATTCACTCCTCTAACTGCGTCTTCTTAG

Protein sequence

MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMMGILSGSDLSNLSVVAKRTPRMGLCCVVDEVGESSDCDGEMVGVLVDGGVSGDGNGGGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEEYCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWEAEEVDDKEAGIDNFGKPCSPRFPFGVQPPFTPLTASS

Homology

[Close]

BLAST of Lsi11G003240 vs. ExPASy TrEMBL
Match: A0A6J1KGA4 (uncharacterized protein LOC111493633 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493633 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.9e-98
Identity = 196/282 (69.50%), Postives = 227/282 (80.50%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EIV+QI KSR LTLCASSKLLPPP +IGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKESSMEAEIVNQISKSRSLTLCASSKLLPPPLIIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGD---GNG 120
             LS  DLSNLS VAKR+P +  GLCC + +V  SSDC G +VGV VDGG+  D   G+G
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLNGGLCCGIAKVRGSSDCGGGVVGVSVDGGIGRDGCGGDG 120

Query: 121 GGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEE 180
           GGSDGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEE
Sbjct: 121 GGSDGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEE 180

Query: 181 YCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWE 240
           YCGR++  NP DG+++SMYADLIW NHKDASRAE YHLQA +TSPD+SFV ASYA+FLW+
Sbjct: 181 YCGRSISANPNDGNVISMYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYAQFLWD 240

Query: 241 A-EEV---DDKEAGIDNFGKPCSPR-FPFGVQPPFTPLTASS 273
           A EEV   +D+E G D+FGKPCS R F FGVQP  TPLT +S
Sbjct: 241 AGEEVKDDNDEEDGFDSFGKPCSSRPFDFGVQPQLTPLTGAS 282

[Close]

BLAST of Lsi11G003240 vs. ExPASy TrEMBL
Match: A0A6J1G2S9 (uncharacterized protein LOC111450271 OS=Cucurbita moschata OX=3662 GN=LOC111450271 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.6e-93
Identity = 188/272 (69.12%), Postives = 213/272 (78.31%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EIVHQIPKSR LTLCASSKLLPPPPMIGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKEASMEAEIVHQIPKSRSLTLCASSKLLPPPPMIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGDGNGGGS 120
             LS  DLSNLS VAKR+P +  GLCC V EVGESSDC G+               GGGS
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLDGGLCCGVAEVGESSDCGGD---------------GGGS 120

Query: 121 DGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEEYCG 180
           DGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEEYCG
Sbjct: 121 DGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEEYCG 180

Query: 181 RAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWEA-E 240
           R++  NP DG+++S+YADLIW NHKDASRAE YHLQA +TSPD+SFV ASYARFLW+A E
Sbjct: 181 RSISANPNDGNVISIYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYARFLWDAGE 240

Query: 241 EV-----DDKEAGIDNFGKPCSPR-FPFGVQP 264
           EV     D++E G D+FG+P S R F FGVQP
Sbjct: 241 EVKDDDDDEEEDGFDSFGEPYSSRPFDFGVQP 257

[Close]

BLAST of Lsi11G003240 vs. ExPASy TrEMBL
Match: A0A6J1KEK4 (uncharacterized protein LOC111493633 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493633 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.4e-92
Identity = 187/279 (67.03%), Postives = 216/279 (77.42%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EIV+QI KSR LTLCASSKLLPPP +IGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKESSMEAEIVNQISKSRSLTLCASSKLLPPPLIIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGDGNGGGS 120
             LS  DLSNLS VAKR+P +  GLCC + +V  SSDC G+               GGGS
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLNGGLCCGIAKVRGSSDCGGD---------------GGGS 120

Query: 121 DGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEEYCG 180
           DGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEEYCG
Sbjct: 121 DGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEEYCG 180

Query: 181 RAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWEA-E 240
           R++  NP DG+++SMYADLIW NHKDASRAE YHLQA +TSPD+SFV ASYA+FLW+A E
Sbjct: 181 RSISANPNDGNVISMYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYAQFLWDAGE 240

Query: 241 EV---DDKEAGIDNFGKPCSPR-FPFGVQPPFTPLTASS 273
           EV   +D+E G D+FGKPCS R F FGVQP  TPLT +S
Sbjct: 241 EVKDDNDEEDGFDSFGKPCSSRPFDFGVQPQLTPLTGAS 264

[Close]

BLAST of Lsi11G003240 vs. ExPASy TrEMBL
Match: A0A0A0LL02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006810 PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 6.3e-85
Identity = 185/274 (67.52%), Postives = 207/274 (75.55%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLL+S STPILNTWKPH KE SP T I+HQ  KSR  TL ASSKLLP P MIGG AIK M
Sbjct: 1   MLLKSPSTPILNTWKPHFKESSPETVILHQFCKSRLPTLSASSKLLPAPCMIGGQAIKTM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM-----GLCCVVDEVGESSDCDGEMVGVLVDGGVSGDGNG 120
                  LSN+SVVAKR PRM     GLCC VD+VGESSDC GEMVG  VDG V+ DG  
Sbjct: 61  -------LSNISVVAKRIPRMAVLDEGLCCGVDDVGESSDCGGEMVGGFVDGKVNRDG-C 120

Query: 121 GGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEE 180
            G+D G+ GCF S D D+E D AE+ FQRM++ NP++SLLLSNYAQFLKEVRGDLIKAEE
Sbjct: 121 NGNDNGNGGCFVSWDGDTEEDMAEMHFQRMIKTNPKDSLLLSNYAQFLKEVRGDLIKAEE 180

Query: 181 YCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWE 240
           YCGRA+L    +GS++SMYADLIW+N+ DASRAE YHLQAT+TSPDNSFVFA+YARFLWE
Sbjct: 181 YCGRAMLARGNNGSVISMYADLIWSNYMDASRAESYHLQATKTSPDNSFVFAAYARFLWE 240

Query: 241 AE-EVDDKEAGIDNF-GKPCSPRFPFGVQPPFTP 268
            E EVD  EA  D+F G P SP   FG Q   TP
Sbjct: 241 VEKEVDKGEAETDSFGGNPFSPPPCFGPQSHPTP 266

[Close]

BLAST of Lsi11G003240 vs. ExPASy TrEMBL
Match: A0A6J1CN93 (uncharacterized protein LOC111013150 OS=Momordica charantia OX=3673 GN=LOC111013150 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 2.9e-82
Identity = 177/288 (61.46%), Postives = 206/288 (71.53%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPA-IKM 60
           MLLRS STPILN+WKP LKE SP  EIV Q PKSRP++LCASSK  PP PMIGG    KM
Sbjct: 1   MLLRSASTPILNSWKPQLKETSPEAEIVLQFPKSRPVSLCASSKSSPPHPMIGGSGNHKM 60

Query: 61  MGILSGSDLSNLSVVAKRTPRMGLCCVVDEVGESSDC---------DGEMVGVLVDGGVS 120
           M I S SDLSNL  V K TP M L     E+ E  +          DG +   + +GGV 
Sbjct: 61  MRIRSESDLSNLP-VEKNTPSMELLRRFHEIEEREEAVESTRMAFLDGGLCCSVDEGGVG 120

Query: 121 GDG-NGGGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGD 180
           G G  GGGSDGG DGC  S DS+ END+ +L++Q+M+EANP+NSLLLSNYA FLKEV GD
Sbjct: 121 GVGCGGGGSDGGGDGCSGSWDSNHENDRTDLYYQKMIEANPENSLLLSNYALFLKEVCGD 180

Query: 181 LIKAEEYCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASY 240
           LIKAEEYCG+A+L NP DG ++SMYADLIW NHKDASRAE Y+ QAT+ SPDN +V ASY
Sbjct: 181 LIKAEEYCGKAILANPNDGDVLSMYADLIWENHKDASRAESYYDQATKASPDNCYVLASY 240

Query: 241 ARFLWEAEEVDDK-----EAGIDNFGKPCSPRFPFGVQPPFTPLTASS 273
           ARFLW+AEE +D+     E  +D+FGKP SP F FGVQP   PL A+S
Sbjct: 241 ARFLWDAEEEEDEDNEEVEDRVDSFGKPSSPPFVFGVQPQLLPLAAAS 287

[Close]

BLAST of Lsi11G003240 vs. NCBI nr
Match: XP_023545630.1 (uncharacterized protein LOC111805006 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.0 bits (959), Expect = 1.1e-99
Identity = 200/276 (72.46%), Postives = 223/276 (80.80%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EI HQIPKSRPLTLCASSKLLPPPPMIGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKEASMEAEIAHQIPKSRPLTLCASSKLLPPPPMIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGD---GNG 120
             LS  DLSNLS VAKR+P +  GL C V EVGESSDC G MVGV VDGG+  D   G+G
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLNGGLFCGVAEVGESSDCGGGMVGVSVDGGIGRDGCGGDG 120

Query: 121 GGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEE 180
           GGSDGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEE
Sbjct: 121 GGSDGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEE 180

Query: 181 YCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWE 240
           YCGR++  NP DG+++SMYADLIW NHKDASRAE YHLQA +TSPD+SFV ASYARFLW+
Sbjct: 181 YCGRSISANPNDGNVISMYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYARFLWD 240

Query: 241 A-EEV------DDKEAGIDNFGKPCSPR-FPFGVQP 264
           A EEV      DDKE G D+FG+P S R F FGVQP
Sbjct: 241 AGEEVEDDDDDDDKEDGFDSFGEPYSSRPFDFGVQP 276

[Close]

BLAST of Lsi11G003240 vs. NCBI nr
Match: KAG6599396.1 (hypothetical protein SDJN03_09174, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030381.1 hypothetical protein SDJN02_08728 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.5 bits (955), Expect = 3.2e-99
Identity = 198/274 (72.26%), Postives = 224/274 (81.75%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EIVHQIPKSR LTLCASSKLLPPPPMIGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKEASMEAEIVHQIPKSRSLTLCASSKLLPPPPMIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGD---GNG 120
             LS  DLSNLS VAKR+P +  GLCC V EVGESSDC G MVGV VDGG+  D   G+G
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLDGGLCCGVAEVGESSDCGGGMVGVSVDGGIGCDGCGGDG 120

Query: 121 GGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEE 180
           GGSDGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEE
Sbjct: 121 GGSDGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEE 180

Query: 181 YCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWE 240
           YCGR++  NP DG+++S+YADLIW NHKDASRAE YHLQA +TSPD+SFV ASYARFLW+
Sbjct: 181 YCGRSISANPNDGNVISIYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYARFLWD 240

Query: 241 A-EEVDD----KEAGIDNFGKPCSPR-FPFGVQP 264
           A EEV+D    +E G D+FG+P S R F FGVQP
Sbjct: 241 AGEEVEDDDDNEEDGFDSFGEPYSSRPFDFGVQP 274

[Close]

BLAST of Lsi11G003240 vs. NCBI nr
Match: XP_022999169.1 (uncharacterized protein LOC111493633 isoform X1 [Cucurbita maxima])

HSP 1 Score: 367.5 bits (942), Expect = 1.0e-97
Identity = 196/282 (69.50%), Postives = 227/282 (80.50%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EIV+QI KSR LTLCASSKLLPPP +IGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKESSMEAEIVNQISKSRSLTLCASSKLLPPPLIIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGD---GNG 120
             LS  DLSNLS VAKR+P +  GLCC + +V  SSDC G +VGV VDGG+  D   G+G
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLNGGLCCGIAKVRGSSDCGGGVVGVSVDGGIGRDGCGGDG 120

Query: 121 GGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEE 180
           GGSDGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEE
Sbjct: 121 GGSDGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEE 180

Query: 181 YCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWE 240
           YCGR++  NP DG+++SMYADLIW NHKDASRAE YHLQA +TSPD+SFV ASYA+FLW+
Sbjct: 181 YCGRSISANPNDGNVISMYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYAQFLWD 240

Query: 241 A-EEV---DDKEAGIDNFGKPCSPR-FPFGVQPPFTPLTASS 273
           A EEV   +D+E G D+FGKPCS R F FGVQP  TPLT +S
Sbjct: 241 AGEEVKDDNDEEDGFDSFGKPCSSRPFDFGVQPQLTPLTGAS 282

[Close]

BLAST of Lsi11G003240 vs. NCBI nr
Match: XP_022946073.1 (uncharacterized protein LOC111450271 [Cucurbita moschata])

HSP 1 Score: 352.4 bits (903), Expect = 3.4e-93
Identity = 188/272 (69.12%), Postives = 213/272 (78.31%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EIVHQIPKSR LTLCASSKLLPPPPMIGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKEASMEAEIVHQIPKSRSLTLCASSKLLPPPPMIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGDGNGGGS 120
             LS  DLSNLS VAKR+P +  GLCC V EVGESSDC G+               GGGS
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLDGGLCCGVAEVGESSDCGGD---------------GGGS 120

Query: 121 DGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEEYCG 180
           DGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEEYCG
Sbjct: 121 DGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEEYCG 180

Query: 181 RAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWEA-E 240
           R++  NP DG+++S+YADLIW NHKDASRAE YHLQA +TSPD+SFV ASYARFLW+A E
Sbjct: 181 RSISANPNDGNVISIYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYARFLWDAGE 240

Query: 241 EV-----DDKEAGIDNFGKPCSPR-FPFGVQP 264
           EV     D++E G D+FG+P S R F FGVQP
Sbjct: 241 EVKDDDDDEEEDGFDSFGEPYSSRPFDFGVQP 257

[Close]

BLAST of Lsi11G003240 vs. NCBI nr
Match: XP_022999170.1 (uncharacterized protein LOC111493633 isoform X2 [Cucurbita maxima])

HSP 1 Score: 349.4 bits (895), Expect = 2.9e-92
Identity = 187/279 (67.03%), Postives = 216/279 (77.42%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEPSPGTEIVHQIPKSRPLTLCASSKLLPPPPMIGGPAIKMM 60
           MLLRS ST ILN WKPHLKE S   EIV+QI KSR LTLCASSKLLPPP +IGGPAI MM
Sbjct: 1   MLLRSASTSILNPWKPHLKESSMEAEIVNQISKSRSLTLCASSKLLPPPLIIGGPAINMM 60

Query: 61  GILSGSDLSNLSVVAKRTPRM--GLCCVVDEVGESSDCDGEMVGVLVDGGVSGDGNGGGS 120
             LS  DLSNLS VAKR+P +  GLCC + +V  SSDC G+               GGGS
Sbjct: 61  RTLSVPDLSNLSAVAKRSPFLNGGLCCGIAKVRGSSDCGGD---------------GGGS 120

Query: 121 DGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEEYCG 180
           DGGDDGCF S D+D END A+L++Q+M+EANP+NSLLLSNYA+FL EVRGDL+KAEEYCG
Sbjct: 121 DGGDDGCFGSWDADRENDWADLYYQKMIEANPENSLLLSNYARFLMEVRGDLLKAEEYCG 180

Query: 181 RAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFVFASYARFLWEA-E 240
           R++  NP DG+++SMYADLIW NHKDASRAE YHLQA +TSPD+SFV ASYA+FLW+A E
Sbjct: 181 RSISANPNDGNVISMYADLIWKNHKDASRAESYHLQAAKTSPDDSFVLASYAQFLWDAGE 240

Query: 241 EV---DDKEAGIDNFGKPCSPR-FPFGVQPPFTPLTASS 273
           EV   +D+E G D+FGKPCS R F FGVQP  TPLT +S
Sbjct: 241 EVKDDNDEEDGFDSFGKPCSSRPFDFGVQPQLTPLTGAS 264

[Close]

BLAST of Lsi11G003240 vs. TAIR 10
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 165.6 bits (418), Expect = 5.5e-41
Identity = 116/262 (44.27%), Postives = 157/262 (59.92%), Query Frame = 0


Query: 1   MLLRSVSTPILNTWKPHLKEP--SP--GTEIVHQIPKSRPLTLCASSKLLPPPPM----I 60
           MLLRS STP+LN+   H+  P  SP    E VHQI + R +TL ASS      PM     
Sbjct: 1   MLLRSASTPLLNS-LVHVSSPRDSPIETVESVHQIQRHRSITLSASSSSCCYSPMSVHSS 60

Query: 61  GGPAIKMMGILSGSDLSNLS----VVAKRTPRMGLCCVVDE-VG----ESSDCDGEMVGV 120
              + +M    S SDL +L+     V+K      L   VDE +G     +S  DG    +
Sbjct: 61  DDSSRRMKRTASDSDLRHLTSTKPPVSKFLSGGALMEDVDEGIGFGLIRTSSYDGISWAL 120

Query: 121 LVDGGVSGDGNGGGSDGGDDGCFD--SCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQ 180
             D  V+G G GG   GG  G     S   D  +D  ++ +++M+EANP N + LSNYA+
Sbjct: 121 DEDTEVAGGGGGGMFHGGGKGRSGGRSDGGDGGDDNTDVHYRKMIEANPGNGIFLSNYAK 180

Query: 181 FLKEVRGDLIKAEEYCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPD 240
           FLKEVR D +KAEEYCGRA+LV+P DG++++MYA+L+W  HKD+SRAE Y  QA   +P+
Sbjct: 181 FLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDSSRAENYFNQAVAAAPE 240

Query: 241 NSFVFASYARFLWEAEEVDDKE 244
           + +V ASYARFLW+AEE +++E
Sbjct: 241 DCYVQASYARFLWDAEEEEEEE 261

[Close]

BLAST of Lsi11G003240 vs. TAIR 10
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-31
Identity = 77/177 (43.50%), Postives = 108/177 (61.02%), Query Frame = 0


Query: 104 LVDGGVSGDGNGGGS--DGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQ 163
           LV GG  G G  GG+  +GG        D     D  + +++ M+++NP NSLL  NYA+
Sbjct: 129 LVSGGGGGMGGSGGNICNGGGGVGGSGVDGGRSEDATDTYYREMIDSNPGNSLLTGNYAK 188

Query: 164 FLKEVRGDLIKAEEYCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPD 223
           FLKEV+GD+ KAEEYC RA+L N  DG+++S+YADLI +NH+D  RA  Y+ QA + SP+
Sbjct: 189 FLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILHNHQDRQRAHSYYKQAVKMSPE 248

Query: 224 NSFVFASYARFLWEAEEVDDKEA------GIDNFGKPCSPRFPFGVQPPFTPLTASS 273
           + +V ASYARFLW+ +E ++ EA       + +      P   F   P  T +TASS
Sbjct: 249 DCYVQASYARFLWDVDEDEEDEALGEEEENLSDETGHVPPTTMFRDFPQHTSITASS 305

[Close]

BLAST of Lsi11G003240 vs. TAIR 10
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-28
Identity = 71/138 (51.45%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 107 GGVSGDGNGGGSDGGDDGCFDSCDSDSENDKAELFFQRMLEANPQNSLLLSNYAQFLKEV 166
           GG  GDG GGG  GG  G  D             +++ M++  P ++LLLSNYA+FLKEV
Sbjct: 92  GGRGGDGAGGGG-GGGGGSVDG------------YYEEMIQRYPGDTLLLSNYARFLKEV 151

Query: 167 RGDLIKAEEYCGRAVL-VNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSFV 226
           +GD  KAEEYC RA+L  +  DG L+SMY DLIW NH D  RA+ Y+ QA ++SPD+  V
Sbjct: 152 KGDGRKAEEYCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNV 211

Query: 227 FASYARFLWEAEEVDDKE 244
            ASYARFLW+AEE  ++E
Sbjct: 212 LASYARFLWDAEEEVEEE 216

[Close]

BLAST of Lsi11G003240 vs. TAIR 10
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 4.5e-27
Identity = 79/199 (39.70%), Postives = 107/199 (53.77%), Query Frame = 0


Query: 57  IKMMGILSGSDLSNLSVVAKRT---PRMGLCCVVDEVGESSDCDGEMVGVLVDGGV---- 116
           + M  +LS SD+     + KR    P        DE GE      +  G ++ GG+    
Sbjct: 59  VGMRRVLSESDVIRSERMLKRVGSKPSPARIPEDDEAGEEEIRFADGWGSMISGGLPVEE 118

Query: 117 ---SGDGNGGGSDGGDDGCFDSCDSDSENDKAEL--FFQRMLEANPQNSLLLSNYAQFLK 176
              +G G GGGS  G  G + +       DK+++  +++ ML +NP NSLLL NY +FL 
Sbjct: 119 KCFTGGGVGGGS--GYSGGYGNGGGGGYEDKSKIGDYYREMLRSNPNNSLLLMNYGKFLY 178

Query: 177 EVRGDLIKAEEYCGRAVLVNPYDGSLMSMYADLIWNNHKDASRAERYHLQATETSPDNSF 236
           EV  D   AEEY GRA+L NP DG  +SMY  LIW   +D  RA+ Y  QA   SP++  
Sbjct: 179 EVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQGYFDQAVNASPNDCM 238

Query: 237 VFASYARFLWEAEEVDDKE 244
           V  SYARF+WEAE+ DD +
Sbjct: 239 VLGSYARFMWEAEDDDDDD 255

[Close]

BLAST of Lsi11G003240 vs. TAIR 10
Match: AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-18
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 0


Query: 141 FFQRMLEANPQNSLLLSNYAQFLKEVRGDLIKAEEYCGRAVLVNPYDGSLMSMYADLIWN 200
           +++ MLE  P + LLL NYA+FL E +GDL  AEEY  +  +V P DG  ++ Y  L+  
Sbjct: 124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 183

Query: 201 NHKDASRAERYHLQATETSPDNSFVFASYARFLWEAEEVDDKE 244
            H+D ++A  Y  +A + SPD+S V A+YA FLWE    DD E
Sbjct: 184 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDDE 225

The following BLAST results are available for this feature:

BLAST of Lsi11G003240 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi11G003240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGA4	4.9e-98	69.50	uncharacterized protein LOC111493633 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G2S9	1.6e-93	69.12	uncharacterized protein LOC111450271 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A6J1KEK4	1.4e-92	67.03	uncharacterized protein LOC111493633 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LL02	6.3e-85	67.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006810 PE=4 SV=1	[more]
A0A6J1CN93	2.9e-82	61.46	uncharacterized protein LOC111013150 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Lsi11G003240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023545630.1	1.1e-99	72.46	uncharacterized protein LOC111805006 [Cucurbita pepo subsp. pepo]	[more]
KAG6599396.1	3.2e-99	72.26	hypothetical protein SDJN03_09174, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022999169.1	1.0e-97	69.50	uncharacterized protein LOC111493633 isoform X1 [Cucurbita maxima]	[more]
XP_022946073.1	3.4e-93	69.12	uncharacterized protein LOC111450271 [Cucurbita moschata]	[more]
XP_022999170.1	2.9e-92	67.03	uncharacterized protein LOC111493633 isoform X2 [Cucurbita maxima]	[more]

BLAST of Lsi11G003240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20190.1	5.5e-41	44.27	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80130.1	3.0e-31	43.50	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G32340.1	4.1e-28	51.45	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G17940.1	4.5e-27	39.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G04530.1	2.2e-18	44.66	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 203..235 e-value: 82.0 score: 8.7 coord: 168..200 e-value: 230.0 score: 5.4 coord: 133..165 e-value: 1.5 score: 17.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 126..245 e-value: 1.7E-12 score: 49.1
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 135..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..129
None	No IPR available	PANTHER	PTHR26312:SF73	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN	coord: 1..250
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 1..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G003240.1	Lsi11G003240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
molecular_function	GO:0005515	protein binding