Lsi11G002880 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi11G002880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	RRM domain-containing protein
Location	chr11: 2994312 .. 2998514 (-)
RNA-Seq Expression	Lsi11G002880
Synteny	Lsi11G002880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGACATGTCGATTAACGGTTCCTACAAATTAGCAAAAGCGATGGCGAGTTTAACATTGGGAAAGGGAGTCCAGGAGTGTTCTTCTCGACTTTCTTCATTCTCCTCTGAGATTGGATTTTCACGGTGGCCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGACGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCAATTCTTCCACCAACCGGGTTCGCTCCTTCCATCATTTTATGTGACAAATTTTCTTTTACGACTCTAGATAATAGCGTTACTTCTTGTATACTTAAGAATTATGCAGCTCTTTAGGTGTTTCTGATGGAATTTTTGATTGATTGGATATAAGTTTGTGATTAGTTTTCTTTTCTTCTTTTTTTTGTTCAAGGCTACTTGAAGTTCAGAGATTAATTCAAACTCAAATGTTTAGTTTAGGACGTTTCTTTAGGAGTTTAGACGTGGTTTGAGTTACTAGACATGGTGGACAAAACTGGATTTGTGGTGAAGATTCTTTGCTGTTGTGGAGAATTTGAGTCATTAGTTTACTTTTGTTTCACTAACATGCTTCCATGACCTGTATGTGCTATGTATTTGTTAAAATGCTTCAATTAGGCATGTTGAACTTTTTATGTGTTCGAATGGCTTTGTTACATGTGGTTTCCATAATGTAATTCTAGTTGAACACTTTGATTTGTCATCAGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGGTATGTTAATTTATAGCTGGAATGCAAATCTTTAAGTGTTAGCTGGTTATATATTTTTCATTATGATTTTGAGTCTTGGGTCCTGACATTGTACCGCTTTGAATTAGACTATTGAAGGTCGGGTTGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTCGATGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATATGAACATTCACTAGATCGTGATCTACCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAAGATAATGAGAAAGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGAAGATTGGAGCGGAGGTGGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGACAATGATAGAGATCAACTCTCAAGGAGAGATAACGGGTGAGACTGTCTTCAAACTTACTGAAATCAACGTTAAGTTGTTTTAATATAAATTTTCTGTTCATCTTTGGTTAGTCATATGACTAATTTGCTCATCTGTGGCATGATGTTGAAGTTTTAAGTTTGTCGACAATTATTTTGATTGGAATGTCTGATTATTTCTAGGTTTTTGATAGTTTTGATCTGGGCAGTAAGTGATTCCAGAAATTTTTTAGAGATCTTGAAAGCACTTTCATTGGGTTTATATTAGGGGCACTGGACAGATGGGAAAGAAATTCCTACTAGCAAATTGCACAACTAGATGGCAGTACAGGCATGTTCAAAACAATGGATCTGCTGTTAGCCTGTTACAACGTTCAGAGAGATGAATTAAATAATAAATTTTCTGTAGGGATCACTTAAAAAATGTTTCCACATAATTCTTAGCTCATTTTAGTGCTTGCATAGTCTTGTGAGATTTTAAGACCATCTTTAGTTTTTCTTTTCTCCAAATGTACACACCATTTCTCCATTACTTTCGTATTTGTATGGTATAATCCTCTATTGTTAAAGGAAGTGGTTCCCTTTAACAACTACAACTTAAATTTTTTCTTTACAAATTGTAGGAATCTTTTGTAAATCCCATTGGATGGGTTATCTTTTGTATCATTTCATTCAAACATTGAAATTGTTTCCTATCCAAAATAATATTAATAAAAAGTAAAGGAAGAGGAAAATTGCATATGTTCTTCCCTCCTGTTTCATAGAAAGGATGAGGGAGTCACTTTTTGGTTATGATTATATGATTGCTATTATGTCTTCTCTTTTCAGTCTAACAATTGATCCAGATCTTGCCATTTCTTCCCTCCTGTTTCATAAAAAAGATGGAGAAAGTGGAATAACCTTTTGGCCATGATTATGTGATTGCTATTATGGCTTCTGTTTTCAGTGTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGACTATATCCATGAAGTATGCTTACCATTTTTCAACTTTTAGATTTTCTCCATTAAAAGGTTAGAACTGACTAATAAGCATCTCGTGCAACTTTTGCTCCTATTGTTTGCGTTGTAGTTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTCTGTTTGTATATATAGTTGACTAAGGAGTGGCTTGATGATTCTTTTTTCCTTGCAGAAGAGAGAGATGGTCATTTGGAAATGGTTGGCAAAGTTTTCAGAAAAATTTGAGTGTGGATTAGCATAATTTAATACTATCGATCTGAAATTTGCTTCAAAATATATATACATATTGGTCCCAAACAAATATGAGACCCATGCTGCAGTTCATACTTGCATTTGAATCTAATTATAGTTTTGTGCAATGTTCTGTAACTTGTTTTGCATCATTCTTTTAAATATCATGATTGCACTTGAATTTAAGGCCTTAGAGGTTTTCCTTTTCAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAGGGAAAACTTGTAATTGAGTTGCAAAAGAAAGCCAAGGTAAAAAATAATTTTATAACTTGCAACCATGATACTTTTGTTGTGTTCTCATTGTTACCCCATCCCTTGAGGTTTATAACTAATATCGAGTTCATGTCCGACTGACTTGGATCCAGAAACTGGAAGATGCATTAATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGGTAACTACCTGTTTAATATTCGACGTTGTTTAGAAACTACATTGGCAATGATAATTTTTGTTATGCAAATAAGTGCAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGTTTGTGTATCAACATTAAAACACCTTCATTCTCTTCTTTCTCAAAACAATAATAATAAGAAGACGAAGAACAGTTAACATCTAATGCAATATAAAAAATGTGTTAACGAATGAAATTGTTGGACAGGATCTTGTTGGAGCAATTGTACTATGTATCAATATTTCGTAGGGAAACTTACATATGACACATTTGTTATTATCATAATATGAAAAGACAAGAATATTTTTATCTATATCAGTTATCAGAAAATTTTCATATATTATATGTATGCAAGTATGTGTAAACATTACTAAATCTCCCATCTCTGTAGCCGATTACTCTTCTCTAAAGATATATACTTGTAATTCATCCTCTTGACATTGCACATTAATGAATAAAACAACATTATCATTTCTTACCTTACAGGCTCTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAGCCAATTGCAATTCATGTCATAAGCCGAAGAGGCTGCATCGTGCAATTTTATTGGCATGAAACTCTTCACCGTGGTTGGGGTATTCATGGTCTTCTGTTCATACTGATGACAAGTTGTGATGTAGAATTCGTTTGTAACCTAACTTTTCCCAAGATTAAGCTGTCCATTTATTTCATGGTACGTTCACAATCAACTATGCACATGTTTTTACTCGCTATTAGCTTCTGCAGAGGTTCATCTCACTTTTGTCAAGTTAGATAGGTAAAGATACATTGAAAACTAATTCTGACATCCAAGTAGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAATGTAATTTGAAAGCTTAGGTTGTAATCCTTTTCCAAGGACATTTCGATATATTTCAAACCGAAGTCCTATTGGTATATCATTAAATTTCATCCCTTATCTTTTTACTTACAA

mRNA sequence

CCGACATGTCGATTAACGGTTCCTACAAATTAGCAAAAGCGATGGCGAGTTTAACATTGGGAAAGGGAGTCCAGGAGTGTTCTTCTCGACTTTCTTCATTCTCCTCTGAGATTGGATTTTCACGGTGGCCATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGACGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCAATTCTTCCACCAACCGGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGTCGGGTTGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTCGATGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATATGAACATTCACTAGATCGTGATCTACCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAAGATAATGAGAAAGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGAAGATTGGAGCGGAGGTGGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGACAATGATAGAGATCAACTCTCAAGGAGAGATAACGGTGTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGACTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAGGGAAAACTTGTAATTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTAATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAGCCAATTGCAATTCATGTCATAAGCCGAAGAGGCTGCATCGTGCAATTTTATTGGCATGAAACTCTTCACCGTGGTTGGGGTATTCATGGTCTTCTGTTCATACTGATGACAAGTTGTGATGTAGAATTCGTTTGTAACCTAACTTTTCCCAAGATTAAGCTGTCCATTTATTTCATGGTACGTTCACAATCAACTATGCACATGTTTTTACTCGCTATTAGCTTCTGCAGAGGTTCATCTCACTTTTGTCAAGTTAGATAGGTAAAGATACATTGAAAACTAATTCTGACATCCAAGTAGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAATGTAATTTGAAAGCTTAGGTTGTAATCCTTTTCCAAGGACATTTCGATATATTTCAAACCGAAGTCCTATTGGTATATCATTAAATTTCATCCCTTATCTTTTTACTTACAA

Coding sequence (CDS)

ATGACGGTGGACGACGATAGCTCGATATACGTCGGCGGTCTTCCTTACGACGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCAATTCTTCCACCAACCGGATTATCAATGATCGTACTACTAGGGGAAAGTGCTATGGCTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGTCGGGTTGTCAGAGTTAATGGAGTGAAGTCTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTCGATGTAGAGAGGGATGTGAGTTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGACAGATATCGTCATAGAGGTAGAAATAATGACTGGTCTAGAGACCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGGATATGAACATTCACTAGATCGTGATCTACCAAAGGATAAATTGTTGGATAGGGATCCAGAGTTGGAAAAAACTTCAAAAGATAATGAGAAAGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGAAGATTGGAGCGGAGGTGGAGGCATTGATAACACTGATGATTATGATAAAAGCCTTGACAATGATAGAGATCAACTCTCAAGGAGAGATAACGGTGTTACAATTGAAGGTCGAACTGCTCGGGATCTTTCATCTGATTCTAGTGATGACTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGTCAGGAGAGAAGGGAAAACTTGTAATTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTAATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGATGCAGTTGACCAAGCTCCATAAAAGCTTTCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGCTCTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG

Homology

[Close]

BLAST of Lsi11G002880 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-11
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPR 65
           +S I+VGGL +D TE  L   FD YG +   ++      ++   T R + +GF+TFT+ R
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQI------MVGRDTGRPRGFGFITFTDRR 70

Query: 66  SAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------------FGRESNRFDVERDV 125
            A DAIK M GR +  +V+ VN  + + GG                 G E   F   R  
Sbjct: 71  GADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPG 130

Query: 126 SWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDK 172
            W RD     D D +R+R     R R  D    RDR  + DL++ER  E   DR +  D 
Sbjct: 131 HWARDCPSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DG 186

[Close]

BLAST of Lsi11G002880 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-11
Identity = 63/184 (34.24%), Postives = 84/184 (45.65%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPR 65
           D+ +YVGGLP DAT   L  IFD +G +  V V             R   + FV + + R
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV-----------ARRPPGFAFVEYDDVR 61

Query: 66  SAIDAIKDMDGRTIEG---RVVRVNGVKSRGGGR---------FGRESNRFDVERDVSWE 125
            A DA++ +DG  I G   RV    G +  GGGR          GR+ + +  +R  S  
Sbjct: 62  DAEDAVRALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRS 121

Query: 126 RDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDK-------ERGYEHSLDRDLPKDK 171
           R RDRGRD   DR R R R+    R R+RSRE +  +       ER   HS  R   + +
Sbjct: 122 RSRDRGRDRSRDRSRDRSRDRSRDRSRERSRERERTRSRSRSPQERDRSHSKSRSRSRSR 174

[Close]

BLAST of Lsi11G002880 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-09
Identity = 74/257 (28.79%), Postives = 120/257 (46.69%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTN 63
           D   +++V  + YD TE  LRR F++YG +  +      + + N R+ + + Y F+ + +
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRI------HMVYNKRSGKPRGYAFIEYEH 159

Query: 64  PRSAIDAIKDMDGRTIEGRVVRVNGVKSR----------GGGRFG----------RESNR 123
            R    A K  DG+ I+GR V V+  + R          GGG  G          R S R
Sbjct: 160 ERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGR 219

Query: 124 FDV----ERDVSWERDRD---RGRDYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEH 183
            D     ERD   ER+RD   R R+ D +R R R R+ +  R R RSRE + +++R  E 
Sbjct: 220 DDTSRYDERDRDRERERDRRERSRERDKERERRRSRSRE-RRRRSRSREKE-ERKRSRER 279

Query: 184 SLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYD 234
           S D+D  KDK  D++ + +K      +    +   ++D +++  ED   G       +  
Sbjct: 280 SRDKDKDKDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKKEDRVEG-------EVP 339

[Close]

BLAST of Lsi11G002880 vs. ExPASy Swiss-Prot
Match: Q54PM6 (Uncharacterized protein DDB_G0284459 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284459 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 8.0e-05
Identity = 66/223 (29.60%), Postives = 107/223 (47.98%), Query Frame = 0


Query: 72  KDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGRDYDHDRYRHRG 131
           +D   RT  GR             R  RE +R D +RD   +RDRDR RD D  R R  G
Sbjct: 776 RDNSSRTTNGR--------DSDRDRDSREGSR-DRDRDRDRDRDRDRDRDRDRGRDRGNG 835

Query: 132 RNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKDNEKVHDLKLNH 191
              +  RDRDRS   D D++R  +   DRD  +D+  DRD + ++  +D ++  D   + 
Sbjct: 836 DRGEGDRDRDRSGRSDRDRDRDRDRDRDRDRDRDRGNDRDRDRDR-DRDRDRGRDRGSDR 895

Query: 192 DQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQL-SRRDNGVTIEGRTARDLSSDSSDD 251
           D+D +  +  + S     +N ++ + + +N+ ++  +  +N         RD + D S  
Sbjct: 896 DRDRKDSNSNNNSNNNNNNNNNNNNNNNNNNNNKKDNNNNNNNNNNNNNKRDGNKDGSSS 955

Query: 252 YIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKK 294
            +   K + E   E+L  +R +I QI+E + +  KL  ELQ K
Sbjct: 956 ELTPKKTKQE---EKL--IRSQIDQIKEDAKDLKKLAKELQSK 983

[Close]

BLAST of Lsi11G002880 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 1.4e-169
Identity = 322/353 (91.22%), Postives = 333/353 (94.33%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NEK+HDLKLNHDQDWEKDHG D SGGGGID TDDYDKSLDNDRDQ+ RRDNG+TIEGRTA
Sbjct: 181 NEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           RDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Sbjct: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 1.5e-168
Identity = 320/353 (90.65%), Postives = 332/353 (94.05%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NEK+HDLKLNHDQDWEKDHG D SGGGGID TDDYDKSLDNDRDQ+ RRDN +TIEGRTA
Sbjct: 181 NEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           RDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Sbjct: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. ExPASy TrEMBL
Match: A0A1S3C6W1 (zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103497531 PE=4 SV=1)

HSP 1 Score: 602.1 bits (1551), Expect = 1.5e-168
Identity = 320/353 (90.65%), Postives = 332/353 (94.05%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NEK+HDLKLNHDQDWEKDHG D SGGGGID TDDYDKSLDNDRDQ+ RRDN +TIEGRTA
Sbjct: 181 NEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           RDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Sbjct: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. ExPASy TrEMBL
Match: A0A0A0LIV9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 1.2e-165
Identity = 321/367 (87.47%), Postives = 332/367 (90.46%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDVSWERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLP+D+ LDR+PELEKTSKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDY--------------DKSLDNDRDQL 240
           NEKVHDLKLNHDQDWEKDHG D SGG GID TDDY              DKSLDNDRDQ+
Sbjct: 181 NEKVHDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQV 240

Query: 241 SRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKL 300
            RRDNG+TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KL
Sbjct: 241 LRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKL 300

Query: 301 VIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVEST 354
           V+ELQKKAKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVEST
Sbjct: 301 VVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVEST 360

[Close]

BLAST of Lsi11G002880 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 2.3e-164
Identity = 315/353 (89.24%), Postives = 329/353 (93.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRESNRFDVERDV+WERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DY+HDRYR RGRNNDWSR+RDRSREHDLDKER YEHS DRDLPKD LLDR+PELEK  K 
Sbjct: 121 DYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKA 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NE+  DLKL+H QDWEKDH  DW+GGGGIDNTDDYDKSL +DRDQLSRRDNG+ IEGRTA
Sbjct: 181 NEQERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           R+LSSDSSDDYIHELKEQLEISTER EELRKEISQIEER+GEKGKLV+ELQKKAKKLEDA
Sbjct: 241 RELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 610.9 bits (1574), Expect = 6.9e-171
Identity = 327/353 (92.63%), Postives = 335/353 (94.90%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGR+IEGRVVRVNGVKSR GGRFGRE NRFDVERDVSWERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHS D D PKDKLLDRDPELEK+SKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NEKVHDLKLNHDQD EK+HG DW GGGGIDN DDY+KSLDNDR+QLSRRDNG+T EGRTA
Sbjct: 181 NEKVHDLKLNHDQDSEKNHGADWIGGGGIDNADDYEKSLDNDRNQLSRRDNGLTSEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           RDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLVIELQKKAKKLEDA
Sbjct: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. NCBI nr
Match: TYK10694.1 (zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 605.5 bits (1560), Expect = 2.9e-169
Identity = 322/353 (91.22%), Postives = 333/353 (94.33%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NEK+HDLKLNHDQDWEKDHG D SGGGGID TDDYDKSLDNDRDQ+ RRDNG+TIEGRTA
Sbjct: 181 NEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNGLTIEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           RDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Sbjct: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. NCBI nr
Match: XP_008457973.1 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061579.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 602.1 bits (1551), Expect = 3.2e-168
Identity = 320/353 (90.65%), Postives = 332/353 (94.05%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDV+WERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLPKD+ LDRDPELEKTSKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NEK+HDLKLNHDQDWEKDHG D SGGGGID TDDYDKSLDNDRDQ+ RRDN +TIEGRTA
Sbjct: 181 NEKLHDLKLNHDQDWEKDHGADLSGGGGIDKTDDYDKSLDNDRDQVLRRDNSLTIEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           RDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KLV+ELQKKAKKLEDA
Sbjct: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. NCBI nr
Match: XP_004139331.2 (U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothetical protein Csa_019381 [Cucumis sativus])

HSP 1 Score: 592.4 bits (1526), Expect = 2.5e-165
Identity = 321/367 (87.47%), Postives = 332/367 (90.46%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR GGRFG+E NRFD ERDVSWERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DYDHDRYRHRGRNNDWSRD DRSREHDLDKERGY+HS DRDLP+D+ LDR+PELEKTSKD
Sbjct: 121 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKD 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDY--------------DKSLDNDRDQL 240
           NEKVHDLKLNHDQDWEKDHG D SGG GID TDDY              DKSLDNDRDQ+
Sbjct: 181 NEKVHDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQV 240

Query: 241 SRRDNGVTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKL 300
            RRDNG+TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKE+SQIEERSGEK KL
Sbjct: 241 LRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKL 300

Query: 301 VIELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVEST 354
           V+ELQKKAKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVEST
Sbjct: 301 VVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVEST 360

[Close]

BLAST of Lsi11G002880 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 589.3 bits (1518), Expect = 2.1e-164
Identity = 315/353 (89.24%), Postives = 329/353 (93.20%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK       IINDR+TRGKCYGFVT
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVK-------IINDRSTRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           FTNPRSAIDAIKDMDGRTIEGRVVRVNGV +RGGGRFGRESNRFDVERDV+WERDRDRGR
Sbjct: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGR 120

Query: 121 DYDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDKLLDRDPELEKTSKD 180
           DY+HDRYR RGRNNDWSR+RDRSREHDLDKER YEHS DRDLPKD LLDR+PELEK  K 
Sbjct: 121 DYEHDRYRRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKA 180

Query: 181 NEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTA 240
           NE+  DLKL+H QDWEKDH  DW+GGGGIDNTDDYDKSL +DRDQLSRRDNG+ IEGRTA
Sbjct: 181 NEQERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTA 240

Query: 241 RDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKLEDA 300
           R+LSSDSSDDYIHELKEQLEISTER EELRKEISQIEER+GEKGKLV+ELQKKAKKLEDA
Sbjct: 241 RELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDA 300

Query: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVESTAIESDVG
Sbjct: 301 LISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of Lsi11G002880 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 210.3 bits (534), Expect = 2.5e-54
Identity = 155/356 (43.54%), Postives = 211/356 (59.27%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVT 60
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VK       I+NDR+ RGKCYGFVT
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVK-------IVNDRSVRGKCYGFVT 60

Query: 61  FTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRGGGRFGRESNRFDVERDVSWERDRDRGR 120
           F+N RSA DAI+DMDG++I GR VRVN V +R GGR      R  ++    W+R  DR  
Sbjct: 61  FSNRRSADDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGR--LQPHGGWDRSPDRRS 120

Query: 121 D--YDHDRYRHRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKD-KLLDRDPELEKT 180
           D  Y+ DRY  R R  D S+DR +   + ++KER YEHS D +   D  ++DR+   E+ 
Sbjct: 121 DGNYERDRYSDRSRERDRSQDRRKDHRY-IEKERAYEHSHDFERRNDHDMVDRNGYKERV 180

Query: 181 SKDNEKVHDLKLNHDQDWEKDHGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEG 240
              +E           DW  D       G GI+ T     S    R Q ++R++   ++G
Sbjct: 181 FDGDE----------GDWRGDRSY-VDNGRGINGT-----SAHEGRSQETKREDSTILDG 240

Query: 241 RTARDLSSDSSDDYIHELKEQLEISTERLEELRKEISQIEERSGEKGKLVIELQKKAKKL 300
              RD  S+SS D  H++KE LE   +  E LR E+  +EER   K  +  ELQKK+K+L
Sbjct: 241 GRGRDHFSNSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRL 300

Query: 301 EDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 354
           ED LI+ KK  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Sbjct: 301 EDLLINEKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREGVAG 327

[Close]

BLAST of Lsi11G002880 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-13
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPRS 66
           S +++GG+ Y   EDSLR  F  YG VV  +V      I++  T R + +GFVTFT+  +
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRV------ILDRETGRSRGFGFVTFTSSEA 99

Query: 67  AIDAIKDMDGRTIEGRVVRVNGVKSR-GGGRFG 99
           A  AI+ +DGR + GRVV+VN    R  GG FG
Sbjct: 100 ASSAIQALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of Lsi11G002880 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-12
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPR 65
           +S I+VGGL +D TE  L   FD YG +   ++      ++   T R + +GF+TFT+ R
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQI------MVGRDTGRPRGFGFITFTDRR 70

Query: 66  SAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------------FGRESNRFDVERDV 125
            A DAIK M GR +  +V+ VN  + + GG                 G E   F   R  
Sbjct: 71  GADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPG 130

Query: 126 SWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDK 172
            W RD     D D +R+R     R R  D    RDR  + DL++ER  E   DR +  D 
Sbjct: 131 HWARDCPSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DG 186

[Close]

BLAST of Lsi11G002880 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-12
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTFTNPR 65
           +S I+VGGL +D TE  L   FD YG +   ++      ++   T R + +GF+TFT+ R
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQI------MVGRDTGRPRGFGFITFTDRR 70

Query: 66  SAIDAIKDMDGRTIEGRVVRVNGVKSRGGGR---------------FGRESNRFDVERDV 125
            A DAIK M GR +  +V+ VN  + + GG                 G E   F   R  
Sbjct: 71  GADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPG 130

Query: 126 SWERDRDRGRDYDHDRYR----HRGRNNDWSRDRDRSREHDLDKERGYEHSLDRDLPKDK 172
            W RD     D D +R+R     R R  D    RDR  + DL++ER  E   DR +  D 
Sbjct: 131 HWARDCPSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGDRDLEREREREREFDRYM--DG 186

[Close]

BLAST of Lsi11G002880 vs. TAIR 10
Match: AT3G50670.1 (U1 small nuclear ribonucleoprotein-70K )

HSP 1 Score: 44.3 bits (103), Expect = 2.4e-04
Identity = 79/312 (25.32%), Postives = 134/312 (42.95%), Query Frame = 0


Query: 2   TVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKVNSSTNRIINDRTTRGKCYGFVTF 61
           T D   +++V  L Y+++E  ++R F+ YG +  V +      + +  T + K Y F+ +
Sbjct: 133 TGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHL------VTDQLTNKPKGYAFIEY 192

Query: 62  TNPRSAIDAIKDMDGRTIEGRVVRVNGVKSR----------GGG----RFG--------- 121
            + R    A K  DG+ I+GR V V+  + R          GGG    R G         
Sbjct: 193 MHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQ 252

Query: 122 ---------RESNRFDVERDVSWE--RDRDRGRDYDHDRYRHRGRNNDWSRDRDRSREHD 181
                     E +R   ER+ S E  ++R+R R+  H++ R R      SRDR R  +H 
Sbjct: 253 QPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRER------SRDRPREDKHH 312

Query: 182 LDKERG-----YEHSLDRDLPKDK----LLDRDPELEKTSKDNEKVHDLKLNHDQDWEKD 241
            D+++G      +   DRD  +D+      DRD   ++TS+D+++  D     ++D+E  
Sbjct: 313 RDRDQGGRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRDHDR--DRSRKKERDYEGG 372

Query: 242 HGEDWSGGGGIDNTDDYDKSLDNDRDQLSRRDNGVTIEGRTARDLSSDSSDDYIHELKEQ 271
             E   GG   +   +Y    +  R      D G T   R +        DD+ +E + +
Sbjct: 373 EYEHEGGGRSRERDAEYRGEPEETRGYY-EDDQGDT--DRYSHRYDKMEEDDFRYEREYK 427

The following BLAST results are available for this feature:

BLAST of Lsi11G002880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22703	3.4e-11	34.05	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q18409	4.4e-11	34.24	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
Q66II8	3.1e-09	28.79	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
Q54PM6	8.0e-05	29.60	Uncharacterized protein DDB_G0284459 OS=Dictyostelium discoideum OX=44689 GN=DDB...	[more]

BLAST of Lsi11G002880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHM1	1.4e-169	91.22	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	1.5e-168	90.65	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C6W1	1.5e-168	90.65	zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LIV9	1.2e-165	87.47	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV...	[more]
A0A6J1G3E0	2.3e-164	89.24	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of Lsi11G002880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889756.1	6.9e-171	92.63	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
TYK10694.1	2.9e-169	91.22	zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]	[more]
XP_008457973.1	3.2e-168	90.65	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061...	[more]
XP_004139331.2	2.5e-165	87.47	U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothet...	[more]
XP_023547216.1	2.1e-164	89.24	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lsi11G002880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	2.5e-54	43.54	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	1.3e-13	44.09	glycine-rich RNA-binding protein 3	[more]
AT1G60650.1	2.4e-12	34.05	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	2.4e-12	34.05	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G50670.1	2.4e-04	25.32	U1 small nuclear ribonucleoprotein-70K	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 252..279
None	No IPR available	COILS	Coil	Coil	coord: 325..345
None	No IPR available	COILS	Coil	Coil	coord: 287..307
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..246
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..351
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..351
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..87 e-value: 1.41012E-20 score: 82.3529
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..87 e-value: 1.6E-21 score: 87.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..85 e-value: 7.2E-18 score: 64.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..91 score: 18.239782
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..103 e-value: 2.5E-22 score: 81.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G002880.1	Lsi11G002880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding